BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14060.1

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478815 jgi|Araly1|478815|fgenesh2_kg.3__1516__AT3G14060.1         758    0.0  


> Ahg478815 jgi|Araly1|478815|fgenesh2_kg.3__1516__AT3G14060.1
Length=493

 Score =  758 bits (410),  Expect = 0.0
 Identities = 467/495 (94%), Gaps = 2/495 (0%)
 Strand=Plus/Plus

Query  1    AAACCATCTTTCACTTTCTTCCTTCTAAAAAATTCTCTCGCGGGATTTCTATGGATCCCC  60
            |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct  1    AAACCATCTTTCACTTTCTTCCTTATATAAAATTCTCTCGCGAGATTTCTATGGATCCCC  60

Query  61   ATTTAGTCATCACTGCCGCCTCCAGCGCATTCCGGTGGCCGTCGAGTCGCCGAAAGATCT  120
            |||| |||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||
Sbjct  61   ATTTGGTCATCACTGCCACCTCCAGCGCATTCCGGTGGCCGTCAAGTCACCGGAAGATCT  120

Query  121  ATCTCCGTCGTCGTAAACCACAAGTTGTGCGTCTCGGCGGGAAAAACAGTACGCCACGTG  180
            |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  121  ATCTCCGTCGGCGTAAGCCACAAGTTGTGCGTCTCGGCGGGAAAAGCAGTACGCCACGTG  180

Query  181  GTAGTTTCTCGCTCAAGAAGGTGGTGACGAGGATGAGACTCAAGTGGCTGAGACTGTACT  240
            | || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  181  GAAGGTTCTCGCTTAAGAAGGTGGTAACGAGGATGAGACTCAAGTGGCTGAGACTGTACT  240

Query  241  ACGTGAGGCTCGTGAAGAAGATCAAAGCGTATTATCGTACTATAGTGAAAGAGTTCGAGG  300
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  241  ACGTGAGGCTCGTGAAGAAAATCAAAGCGTATTATCGTACTATAGTGAAGGAGTTCGAGG  300

Query  301  AAGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACGGCTGCTTTTGCCGCTC  360
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  301  ACGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACAGCTGCTTTTGCCGCTC  360

Query  361  CTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAACCTCGtttttttC  420
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  361  CTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAGCCTCGTTTTTTTC  420

Query  421  TTGTATAACTAAATTATCTCACTTTTGAGTATCAAATTAATTACCTTCATAATTTTGGGG  480
            ||||||| ||||||||| | |||   |||||||||||||||||||||||||||||||| |
Sbjct  421  TTGTATAGCTAAATTATTTAACTC--GAGTATCAAATTAATTACCTTCATAATTTTGGAG  478

Query  481  GTGTTTTAAATATCC  495
            ||||||||||| |||
Sbjct  479  GTGTTTTAAATTTCC  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20298773348


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5