BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14075.1
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904336 jgi|Araly1|904336|Al_scaffold_0003_1464 2966 0.0
> Ahg904336 jgi|Araly1|904336|Al_scaffold_0003_1464
Length=1911
Score = 2966 bits (1606), Expect = 0.0
Identities = 1825/1929 (95%), Gaps = 22/1929 (1%)
Strand=Plus/Plus
Query 160 ATGGCAACTGCAACTATGGCAACAGCAGCTGGAGCAGCTGCTCTTTTATATTACACGTTG 219
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCAACTGCAACTATGGCAACAGCAGCTGGAGCAGCTGCTCTTCTATATTACACGTTG 60
Query 220 AATCGGAAATTAATAGCTGGTCCATCTGACGTTGACGATGAGAATTCTGA-AGCTTCTGC 278
||||||||||||||||| ||||||||||| |||||||||||||||||||| | | |||||
Sbjct 61 AATCGGAAATTAATAGCCGGTCCATCTGATGTTGACGATGAGAATTCTGACA-CCTCTGC 119
Query 279 TTCTCGTCCTTCTTTGAGGATTGACCGTGTTTCGCATAGGCTTATTCAAGCTCCGGCAAC 338
|||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 120 TTCTCGGGCTTCTTTGAGGATTGACCGTGTTTCGCATAGACTAATTCAAGCTCCGGCAAC 179
Query 339 TTGGTTGGAGACTATTTCTACTCTTTCTGAGACTCTTCGTTTTACTTACTCTGAGACTCT 398
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TTGGTTGGAGACTATTTCTACTCTTTCTGAGACTCTTCGTTTTACTTACTCCGAGACTCT 239
Query 399 TGGGAAGTGGCCTATTGGTGATCTTGCGTTTGGGATCAATTTTCTCATCAAGAGGCAGGG 458
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 AGGGAAGTGGCCGATTGGAGATCTTGCTTTTGGGATCAATTTTCTCATCAAGAGGCAGGG 299
Query 459 ACTTCTACATGTTGATCGTGTCTTTGGTGGTAAAGATAGTGTAGAACTTAGAGGATCAGA 518
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||
Sbjct 300 ACTTCTACATGTTGATCGTGTCTTTGGTGGTAAAGATAGTATAGAGCTTAAAGGATCTGA 359
Query 519 AGTAGCCACTGAACTCAAATATCTTTTGCACTTGTTGACATTGTGTTGGCATTTTTCCAA 578
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTAGCCACTGAACTCAGATATCTTTTGCACTTGTTGACATTGTGTTGGCATTTTTCCAA 419
Query 579 GAAGTCGTTTCCGTTTTTCTTAGAAGAGACCGGCTTTACAAAGGAAAATGTCCTTATTCA 638
|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGCCGTTTCCATTATTCTTAGAAGAGACCGGCTTTACAAAGGAAAATGTCCTTATTCA 479
Query 639 TGAACCCAAAGCTGGGATATTGAAGCCAGCTTTTACGGTTCTTGTCGATCACAATACAAA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 CGAACCCAAAGCTGGGATATTGAAGCCAGCTTTTACGGTTCTTGTCGATCACAAAACAAA 539
Query 699 ATATTTTCTGTTATTGATTCGTGGAACGCATAGCATCAAAGATACCTTGACTGCTGCAAC 758
|| |||||| || ||||| |||||||| ||||||||||| || |||||||| ||||||||
Sbjct 540 ATGTTTTCTATTGTTGATCCGTGGAACACATAGCATCAAGGACACCTTGACAGCTGCAAC 599
Query 759 TGGAGCAATCGTACCGTTCCATCATACTGTTGTAAATGAAAGAGGGGTCAGCAATTTGGT 818
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CGGAGCAATCGTACCGTTCCATCATACTGTTGTAAATGAGAGAGGGGTCAGCAATTTGGT 659
Query 819 CTTAGGTTATGCTCATTGTGGTATGGTTGCTGCTGCCCGGTGTATAGCTAAACTTGCCAC 878
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CTTAGGATATGCACATTGTGGTATGGTTGCTGCTGCCCGGTGTATAGCAAAACTTGCCAC 719
Query 879 CCCTTGTCTTCTCAAGGGTCTTGAGCAATATCCAGATTACAAAATCAAGATCGTAGGGCA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCCTTGTCTTCTCAAGGGTCTTGAGCAATATCCAGATTACAAAATCAAGATCGTAGGGCA 779
Query 939 CTCTTTGGGTGGTGGAACGGCTGCACTTTTAACATATATTATGCGGGAGCAGAAAATGCT 998
||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 780 CTCTTTGGGCGGTGGAACGGCTGCACTTTTGACATATATTTTGCGGGAGCAGAAAATGCT 839
Query 999 CTCTACAGCTACATGTGTTACATTTGCGCCAGCTGCTTGTATGACTTGGGAATTAGCCGA 1058
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 840 CTCTACAGCTACCTGTGTTACATTTGCTCCAGCTGCTTGTATGACTTGGGAATTAGCTGA 899
Query 1059 CTCTGGGAATGACTTCATCGTATCTGTCATAAACGGAGCTGATCTGGTGCCTACATTTTC 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCTGGGAATGACTTCATCGTATCTGTCATAAACGGAGCTGATCTGGTGCCTACATTTTC 959
Query 1119 TGCTGCAGCTGTAGATGACTTACGTGCTGAGGTAACAGCATCTGCTTGGCTAAATGATCT 1178
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 TGCTGCAGCAGTAGATGACTTACGCGCTGAGGTAACAGCATCTGCTTGGCTAAATGATCT 1019
Query 1179 GAGAAATCAAATCGAACACACCCGAATCCTCAGCACTGTTTATCGCTCAGCGACGGCTTT 1238
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAGAAATCAAATCGAACGCACTCGAATCCTCAGCACTGTTTATCGCTCAGCGACGGCTTT 1079
Query 1239 AGGATCACGACTTCCATCGATGGCCACTGCCAAAGCAAAAGTTGCTGGCGCTGGTGCAAT 1298
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGGATCACGACTCCCATCTATGGCCACTGCCAAAGCAAAAGTTGCTGGCGCTGGTGCAAT 1139
Query 1299 GTTACGCCCGGTTTCTAGTGGCACACAGGTTGTGATGAGAAGAGCTCAAAGCATGCTGAC 1358
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTACGCCCAGTTTCTAGTGGGACACAGGTTGTGATGAGAAGAGCTCAAAGCATGCTGAC 1199
Query 1359 CCGTCCTGCACTAAGCATATCTTCTTGGTCATGTATGGGACCCCGGCGCAGAGCCTCTGC 1418
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 CCGTCCTGCACTAAGCATGCCTTCTTGGTCATGTATGGGACCCAGGCGCAGAGCCTCTGC 1259
Query 1419 TACTCAGTCAATCTCGGAACATCAGTTAGATACTTCTGAAGCAATGTCCCAAGATATACC 1478
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 TACTCAGTCAAACTCGGAACATCAGTTAGATTCTTCTGAAGCAATGTCCCAAGATATACC 1319
Query 1479 CGAAACTTC-GGATCCTCTTCTTGTTACGGATGAAGAAATCACCGGGAAATGGAAATCAG 1537
||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 CGAAACTTCTGG-TCCTCTTCTTGTTACAGATGAAGAAATCACCGGGAAATGGAAATCAG 1378
Query 1538 AAGCCGAGTGTTCTAATTACGAGGAAACATCACCTCGTCTTGGAGCCACTGATCTTGACG 1597
||| | || || || | ||||||||||||||| |||||||||||||||
Sbjct 1379 AAG---A-TG----AA--AC-A-------TCACCTCGTCTTGGAACCACTGATCTTGACG 1420
Query 1598 AGTGTGAGGATCCAGCGGAAATGGACACACGGGAAGAGCGGATGACTGAAGCTGAGCTAT 1657
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1421 AGTGTGAGGATCCAGCGGAAATGGACACACGCGAAGAGCGAATGACTGAAGCTGAACTAT 1480
Query 1658 GGCAGCAACTGGAGCATGACCTTTACCACGATTCTTCGGAGCAACCTGAAGAAACCGATG 1717
||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
Sbjct 1481 GGCAGCAACTGGAGCATGACCTTTACCACGACACTTCAGAGCAACCAGAAGAAACCGACG 1540
Query 1718 TGGCAAAAGAAATAAAAGAAGAAGAAGAAGCCGTCATTGCAGAGGCCGGTGTGGCCCCGC 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TGGCAAAAGAAATAAAAGAAGAAGAAGAAGCCGTCATTGCAGAGGCCGGTGTGGCCCCGC 1600
Query 1778 CGGAGAGCCAGACGGCCGAGATGAAAGAATCCCGCAGATTCCTCCCAGCGGGTAAAATCA 1837
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1601 CGGAGAGCCAGACGGCTGAGATGAAAGAATCCCGCAGATTCCTCCCGGCGGGCAAAATTA 1660
Query 1838 TGCATATTGTCACGGTGCGGCCCGAGGCCGTAGAGCCTAACGAAGAAGAAGACGAAGATG 1897
|||||||||||||||| || ||| ||||||||||| |||||||||||||||| ||||| |
Sbjct 1661 TGCATATTGTCACGGTTCGACCCAAGGCCGTAGAGGCTAACGAAGAAGAAGAGGAAGACG 1720
Query 1898 GTTCTGCCCTCGAGAGGCCTGAGACAGTGGAGACGGTGGAGGAGGGTAGAGTAGGAATAT 1957
||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1721 GTTCTACCCTCGAGAGGCCTGAGACAGTAGAGACGGTGGAGGAGGGTAGAGTCGGAATAT 1780
Query 1958 TTCTGACGCCGAGGTCATTGTATAGTAAGGTGAGGTTATCGCAGAGGATGATAAGCGATC 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 TTCTGACGCCGAGGTCATTGTATAGTAAGGTGAGGTTATCGCAGAGGATGATAAGCGATC 1840
Query 2018 ATTTCATGCCTGTTTACAGGCGACAGATCGAACGGCTAATACAAGAGCTAACAGTGGAAC 2077
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1841 ATTTCATGCCTGTTTACAGGCGGCAGATCGAACGGCTAATACAAGAGCTAACAGTTGAAC 1900
Query 2078 AACATCCTT 2086
| ||||||
Sbjct 1901 ATGATCCTT 1909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86807668355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5