BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14080.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478821 jgi|Araly1|478821|fgenesh2_kg.3__1522__AT3G14080.1 1098 0.0
> Ahg478821 jgi|Araly1|478821|fgenesh2_kg.3__1522__AT3G14080.1
Length=770
Score = 1098 bits (594), Expect = 0.0
Identities = 718/775 (93%), Gaps = 19/775 (2%)
Strand=Plus/Plus
Query 71 TTCGATCGGATCTGGGTTTTATA-tttttttGAAGAACCCGTGTCCGTCTTCGATCAGT- 128
|||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||
Sbjct 1 TTCGATCGGATCTGGGTTCTATATTTTTTTTGAAGAACCCGAGTCCGTTTTCGATCAGTC 60
Query 129 TCGCGTTCAATAGCCAAATCTTATCTCTTCAGCTGGAATCTGACGAACATTATTATCATC 188
|||||||| |||||||||| ||||||||||| ||| ||||||| |||||||||||| |||
Sbjct 61 TCGCGTTCGATAGCCAAATATTATCTCTTCAACTGAAATCTGAGGAACATTATTATTATC 120
Query 189 GG-TAGTGTTCTATAGAAAGACCGAAAGTTTTCTTC-AATTT----C--A-A-AGTCAGT 238
|| | ||||| |||||||||||||||| ||||| || ||||| | | | |||||||
Sbjct 121 GGTTTGTGTTTTATAGAAAGACCGAAACTTTTCATCAAATTTCAAGCGGATAGAGTCAGT 180
Query 239 GGCGATGTCGTGGGCTGGTCCTGAAGAAATTTATCTTTCAACATCACTCGCTAGTTATCT 298
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 181 GGCGATGTCTTGGGCTGGTCCTGAAGATATTTATCTTTCAACCTCACTCGCTAGTTATCT 240
Query 299 CGATAGAAAACTACTTGTGCTTCTTAGAGATGGTAGAAAGCTAATGGGAACACTCCGTTC 358
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 241 CGATAGAAAACTACTTGTGCTCCTTAGAGATGGTAGAAAGCTAATGGGAATACTCCGTTC 300
Query 359 CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA 360
Query 419 ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT 420
Query 479 TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCTCCACATATGATTCGCGTCTCAGAGGC 538
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 421 TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCGCCGCATATGATTCGTGTCTCAGAGGT 480
Query 539 AGAGATTAAAAGGGCACAAAAGGTGGAGAGGGAAGCGAGTGAGCTGAGAGGAACAATGAG 598
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 AGAGATTAAGAGGGCCCAAAAGGTGGAGAGAGAAGCGAGTGAGCTGAGAGGAACAATGAG 540
Query 599 GAAGAGAATGGAGTTTCTTGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC 658
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGAGAATGGAGTTTCTCGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC 600
Query 659 TTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG 660
Query 719 GGATCGACGCAATTCTTGTGTTTCATTTTGGATGAATATGACA-A-TAAATCTGTGTACT 776
|||||||||||| |||| |||||||||| ||| ||| |||||| | ||| ||||||||||
Sbjct 661 GGATCGACGCAAGTCTTATGTTTCATTTGGGAAGAACATGACAGAATAA-TCTGTGTACT 719
Query 777 TTTGTCTTTGGATCTATTTACCTTTTTAAGaaaaaaaTGTTAAGCAATTTCTTTC 831
| | || |||| |||||| |||||||||| |||||| || |||||||||||||
Sbjct 720 TCT-TC---GGATTTATTTATCTTTTTAAGAGAAAAATATTTAGCAATTTCTTTC 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5