BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14100.1
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478823 jgi|Araly1|478823|fgenesh2_kg.3__1524__AT3G14100.1 2488 0.0
Ahg474538 jgi|Araly1|474538|fgenesh2_kg.1__4492__AT1G54080.1 1247 0.0
Ahg478824 jgi|Araly1|478824|fgenesh2_kg.3__1525__AT3G14110.1 78.7 1e-13
> Ahg478823 jgi|Araly1|478823|fgenesh2_kg.3__1524__AT3G14100.1
Length=1605
Score = 2488 bits (1347), Expect = 0.0
Identities = 1526/1609 (95%), Gaps = 25/1609 (2%)
Strand=Plus/Plus
Query 16 ATAGTACCTGAACCCT-AGCGGAGG-AAAATCAAAAATTGTCTAGGAGAAACAAACAGAG 73
|||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| ||
Sbjct 1 ATAGTACCTGAACCCTAAGCGGAGGAAAAATAAAAAATTGTCGAGGAGAAACAAAC--AG 58
Query 74 ATATCTTTCTTTCTTT-TTATCAGTGGGGaaaaaaaaTGCAGAATCCGAGACTGAagcaa 132
|||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 59 ATATCTTTCTTT-TTTATTCGCAGTGGGGGAAAAAAATGCAGAATCCGAGACTGAAGCAA 117
Query 133 catcag------cagcaacaacaacaacaagctatgatgcagcaacaagctctgatgcag 186
|||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 118 CATCAGCAACAACAACAACAACAACAACAAGCTTTGATGCAGCAACAAGCTCTGATGCAT 177
Query 187 caacaCTCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTGTTCCAAGT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 CAACACTCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTGTCCCAAGT 237
Query 247 GGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTGGAAACATC 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTGGAAACATT 297
Query 307 CATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACTGGCCCTGTTGAA 366
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CATACACAGGTCACAGAGCCTCTGCTTCAGGAGATTTTTACAAGCACTGGCCCTGTTGAA 357
Query 367 AGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGA 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 AGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGACCGA 417
Query 427 AGATCCGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGACAGCCTATC 486
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGATCTGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGACAGCCTATC 477
Query 487 AAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCATTTCAACATT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCATTTCAACATT 537
Query 547 TTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTC 606
||||||||||||||||| || ||||||||||| || |||||||||||||||||| |||||
Sbjct 538 TTTGTTGGAGATCTCAGCCCGGAGGTCACTGACGCGACATTATATCAAAGCTTTGCTGTC 597
Query 607 TTTTCCAGTTGTTCGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 TTTTCCAGTTGTTCGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCAAGAGGC 657
Query 667 TTTGGGTTTGTTTCCTTCCGCAATCAACAGGATGCTCAAACTGCCATTAATGAGATGAAT 726
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTTGGGTTTGTTTCTTTCCGCAATCAACAGGATGCTCAAACTGCCATTAATGAGATGAAT 717
Query 727 GGTAAGTGGTTAAGTAGCAGACAAATCAGATGCAACTGGGCCACGAAGGGCGCTACTTCT 786
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 GGTAAGTGGTTAAGTAGCAGACAGATCAGATGCAACTGGGCCACGAAGGGCGCTACTTCT 777
Query 787 GGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCA 846
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 778 GGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTAGAACTTACAACTGGGTCATCA 837
Query 847 GAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACT 906
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 838 GAGGATGGTAAAGAGACATTAAATGAGGAAGCACCTGAAAACAATTCTCAGTTTACCACT 897
Query 907 GTTTATGTGGGAAACCTTGCTCCAGAGGTAACTCAGCTTGATCTACACCGTTACTTCCAT 966
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GTTTATGTGGGAAACCTTGCTCCAGAGGTAACTCAGCTTGATCTACACCGCTACTTCCAT 957
Query 967 GCTCTTGGCGCTGGAGTTATTGAGGAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTC 1026
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 958 GCTCTTGGCGCTGGAGTTATTGAAGAAGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTT 1017
Query 1027 GTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCT 1086
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTGAGATATAACACTCATCCTGAGGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCT 1077
Query 1087 TACCTCTTTAACAGACAGATAAAGTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACA 1146
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TACCTGTTTAACAGACAGATTAAGTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACA 1137
Query 1147 GCCTCAAACCCACTTCCCCCACCTGCCCCAGCTCCAGTTCCTGGTCTATCTGCAGCTGAT 1206
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1138 GCCTCAAACCCACTTCCCCCACCTGCCCCAGCACCAGTTCCTGGTCTGTCTGCAGCTGAT 1197
Query 1207 CTCCTAAACTATGAGAGGCAATTGGCACTTAGCAAGATGGCAAGTGTGAATGCGTTAATG 1266
||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1198 CTCTTAGCCTATGAGAGGCAATTGGCACTAAGCAAGATGGCTAGTGTGAATGCGTTAATG 1257
Query 1267 CATCAACAGGGTCAACACCCTCTAAGGCA-G--GCTCATGGAATAAATGCCGCTGGAGCA 1323
|||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1258 CATCCACAGGGTCAGCACCCTCTAAGGCAAGCTGCTCATGGAATAAATGCCGCTGGAGCT 1317
Query 1324 ACTGCAGCCATGTATGATGGTGGCTTTCAGAATGTAGCCGCCGCACAGCAACTCATGTAC 1383
|||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1318 ACTGCAGCCATGTACGACGGTGGCTTTCAGAATGTAGCCGCCGCACAGCAGCTTATGTAC 1377
Query 1384 TATCAGTAATAAACCTCAGTTCGTGGCGCCGATCTCAAGTTTCAATCTCTTTGCTTTTT- 1442
||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||
Sbjct 1378 TATCAGTAATAAACCTCAGATCGTGGCGCCAATCTTAAGTTTCAATCTCTTTGATTTTTT 1437
Query 1443 CTCttttt-tttttGTTTGTCTAGAACTTGTTTGT--GTGTGT--CTGTTTGTCT-CTC- 1495
|||||||| ||||| ||| |||||||||||||||| |||||| |||||||||| |||
Sbjct 1438 CTCTTTTTCTTTTTTTTTTTCTAGAACTTGTTTGTTTGTGTGTGTCTGTTTGTCTTCTCT 1497
Query 1496 -ACTTAAGTTATCTATATAAAGTTTTATCTGCAGTTGTATGATTAGTTATGTATTCCCAT 1554
||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 1498 CACTGAAGTTATCTATATAAA-TTTTATCCGCAGTTGTATGCTTAGTTATGTATTCCCAT 1556
Query 1555 GGATTGTAAGACAAGCGAATTACATTCAATAAAAGGGATTTGGATATCC 1603
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GGATTGTACGACAAGCGAATTACATTCAATAAAAGGGATTTGGATATCC 1605
> Ahg474538 jgi|Araly1|474538|fgenesh2_kg.1__4492__AT1G54080.1
Length=1835
Score = 1247 bits (675), Expect = 0.0
Identities = 1003/1159 (87%), Gaps = 32/1159 (3%)
Strand=Plus/Plus
Query 103 aaaaaaaTGCAGAATCCGAGACTGAagcaacatcagcagcaacaacaacaacaagctatg 162
|||||||||||||||| || || ||||| || || || |||||||||||||||||||||
Sbjct 241 AAAAAAATGCAGAATCAAAGGCTTAAGCATCAACAACATCAACAACAACAACAAGCTATG 300
Query 163 atgcagcaacaagctctgatgcagcaaca--C-TCTCTTTACCATCCTGGTGTTTTGGCT 219
|| ||||||||| ||||||| ||||| | |||||||| |||||||||||| |||||
Sbjct 301 AT---TCAACAAGCTATGATGCAACAACATCCTTCTCTTTATCATCCTGGTGTTATGGCT 357
Query 220 CCTCCTCAGTTAGAGCCTGTT-CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTAC 278
||||||||| | |||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 358 CCTCCTCAGATGGAGCCT-TTACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCACTAC 416
Query 279 TTGCCGTAGCGTGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTT-TGCTTCAAG 337
||||||||| ||||||| ||| ||||| ||||| || ||||||||| || | |||||||
Sbjct 417 TTGCCGTAGTGTGTATGCTGGCAACATTCATACGCAAGTCACAGAG-ATTCTTCTTCAAG 475
Query 338 AGATTTTTACAAGCACTGGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGTCAT 397
|||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 476 AGATTTTTGCAAGTACTGGCCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGTCAT 535
Query 398 CATATGGATTTGTTCACTACTTTGATCGAAGATCCGCT-GCTCTGGCTATACTGTCTCTG 456
||||||||||||||||||||||||||||||||| ||| | | |||||||| || ||||
Sbjct 536 CATATGGATTTGTTCACTACTTTGATCGAAGATGTGCTAG-TATGGCTATAATGACTCTT 594
Query 457 AACGGAAGGCATCTGTTTGGACAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAG 516
|| ||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 595 AATGGAAGGCATATATTTGGACAGCCTATGAAAGTTAATTGGGCCTATGCAACTGGTCAA 654
Query 517 AGGGAAGATACATCAAGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACT 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 AGGGAAGATACATCAAGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTTACT 714
Query 577 GATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCGGATGCGAGAGTTATG 636
|||||| |||| | | | |||||||||| |||| || || ||||| || ||||| |||
Sbjct 715 GATGCAGCATTGTTTGATAGCTTTTCTGCCTTTAATAGCTGCTCGGACGCAAGAGTAATG 774
Query 637 TGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGGGTTTGTTTCCTTCCGCAATCAACAG 696
|||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 775 TGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGGTTTGTTTCCTTCCGTAATCAGCAG 834
Query 697 GATGCTCAAACTGCCATTAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAAATCAGA 756
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 GATGCTCAAACTGCCATAAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAGATCAGA 894
Query 757 TGCAACTGGGCCACGAAGGGCGCTACTTCTGGTGATGATAAGC-TCAGTTCTGATGGAAA 815
||||||||||| || || || ||||||| ||| || || |||| | || ||||| |||||
Sbjct 895 TGCAACTGGGCGACAAAAGGTGCTACTTTTGGCGAGGACAAGCAT-AGCTCTGACGGAAA 953
Query 816 AAGTGTTGTGGAACTTACAA-CTGGCTCATCAGAGGATGGTAAAGAGACAT-T-AAATGA 872
|||||||||||||||||||| | ||||| ||||||||||||| |||| | | | ||| ||
Sbjct 954 AAGTGTTGTGGAACTTACAAAC-GGCTCTTCAGAGGATGGTAGAGAG-C-TGTCAAACGA 1010
Query 873 GGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCT-TGCTCCAG 931
|| | |||||||| ||| |||| | ||| ||||| ||||| |||||||| | ||||||
Sbjct 1011 AGATGCCCCTGAAAACAATCCTCAATATACAACTGTCTATGTAGGAAACCTCT-CTCCAG 1069
Query 932 AGGTAACTCAGCTTGATCTACACCGT-TACTTCCATGCTCTTGGCGCTGGAGTTATTGAG 990
| |||||||||||||||||||||||| | ||| || | ||||| ||||||| || ||
Sbjct 1070 AAGTAACTCAGCTTGATCTACACCGTCTG-TTCTATACCCTTGGTGCTGGAGCGATCGAA 1128
Query 991 GAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTCGTGAGATATAACACTCATCCCGAA 1050
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 1129 GAGGTCCGTGTCCAGCGAGACAAAGGGTTTGGTTTTGTGAGATATAACACTCATGACGAG 1188
Query 1051 GCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG 1110
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 1189 GCTGCTCTTGCTATTCAGATGGGCAACGCTCAGCCTTACCTCTTTAGCAGACAGATAAAG 1248
Query 1111 TGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTCCCCCACCT 1170
|| |||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||
Sbjct 1249 TGTTCATGGGGAAACAAACCAACTCCATCAGGCACAGCCTCAAACCCACTTCCTCCACCA 1308
Query 1171 GCCCC-AGCTCCAGTTCCTGGTCTATCTGCAGCTG-ATCTCCTAA-ACTATGAGAGGCAA 1227
||||| | ||| ||| |||| ||| |||||| || | ||| || | ||||||||||||
Sbjct 1309 GCCCCGATCTC-AGTCCCTGCTCTGTCTGCAA-TGGACCTCTTAGCA-TATGAGAGGCAA 1365
Query 1228 TTGGCACTTAGC-AAGATG 1245
|| | || ||| ||||||
Sbjct 1366 CTGACTCT-AGCCAAGATG 1383
> Ahg478824 jgi|Araly1|478824|fgenesh2_kg.3__1525__AT3G14110.1
Length=1088
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 1560 GTAAGACAAGCGAATTACATTCAATAAAAGGGATTTGGATATCCA 1604
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GTACGACAAGCGAATTACATTCAATAAAAGGGATTTGGATATCCA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60106406610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5