BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14110.3
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478824 jgi|Araly1|478824|fgenesh2_kg.3__1525__AT3G14110.1 1568 0.0
> Ahg478824 jgi|Araly1|478824|fgenesh2_kg.3__1525__AT3G14110.1
Length=1088
Score = 1568 bits (849), Expect = 0.0
Identities = 975/1036 (94%), Gaps = 8/1036 (1%)
Strand=Plus/Plus
Query 55 TTGTTTTATCCTCTCAGAGAGCTTTCTTTAGTGATGGCGGCGCTTATCCGGTGTTGCTCC 114
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2 TTGTTTTATCCTCTCAGAGAGCTTTCTTTAGAGATGGCGGCGCTTATCCGGTGTTGCTCC 61
Query 115 TCCTTCTCTCATACTTCCGGTGGCCAACCACCGCCGCGTGACAAGTCTCGAGCTCCAGAG 174
||||| |||||||| ||||||||||||||||||||| | |||| |||||||| |||||||
Sbjct 62 TCCTTTTCTCATACCTCCGGTGGCCAACCACCGCCGAGAGACATGTCTCGAGGTCCAGAG 121
Query 175 ATTGGAAAATTTGCTACATCTATTGGCTACTCAGTAGTCAGAAAACCTGGGGATCATCCT 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 122 ATTGGAAAATTTGCTACATCTATTGGCTACTCAGTAGTCAGAAAACCTGGGGATCATCAT 181
Query 235 CCTTTCTCCAAAATTATACATTCGTCTTCACAGCCTAAGGAGCGACAAGGAAAGGGAATC 294
||||||| ||||||||||||||||||||| | ||| |||||||| | || ||||||| |
Sbjct 182 CCTTTCTTCAAAATTATACATTCGTCTTCCCTGCCCAAGGAGCGTGATGGCAAGGGAACC 241
Query 295 TTACAAACGCCATTTGCCAGTGTGGG-ATCTCTTGACAAGTTTTCAGCTTTTGAGGTAGG 353
|| ||||||||||| |||| | ||| | |||||||||||||||| |||||||| | ||
Sbjct 242 ATAAAAACGCCATTTCCCAGCG-GGGAAACTCTTGACAAGTTTTCGGCTTTTGA-G--GG 297
Query 354 AATTGGGAGGCTCAAATTACCGGTGATGGCAGTGTTGTTGACAAACTCCCTTCAGATGGC 413
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 298 AATTGGGAGGCTCAAATTACCGGTGATGGCAGCGTTGTTGACAAACTCTCTACAGATGGC 357
Query 414 TACACCTCTTGAAGCTTTGGCTGCTGAGATATGTGAGCCTGAGAGCTCCATGTTCAGCAT 473
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TACACCACTTGAAGCTTTGGCTGCTGAGATATGTGAGCCTGAGAGCTCCATGTTCAGCAT 417
Query 474 GCCTATTTTGTTGCTTGTTGCTCTTATTGGAGCCACCGTTGGAGGGTTGCTTGCTCGGCA 533
||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 GCCAATTTTGTTGCTTGTAGCTCTTATTGGAGCCACCGTTGGAGGGTTGGTTGCTCGGCA 477
Query 534 GAGGAAAGGGGAGTTACAGAGGTTGAATGAACAACTACGACAGATTAACGCAGCTCTTAG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAGGAAAGGGGAGTTACAGAGGTTGAATGAACAACTACGACAGATTAACGCAGCTCTTAG 537
Query 594 GAGACAAGCCAAAATCGAGTCTTATGCACCAAGCTTGAGTTATGCTCCAGTGGGAGCAAG 653
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 GAGACAAGCCAAAATCGAGTCTTATGCACCAAGCTTGAGTTATGCCCCAGTGGGAGCAAG 597
Query 654 AATCCCAGATAGTGAAATCATTGTGGAACCAAAGAAACAAGAGTTGATTTCCAAGTTGAA 713
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 AATCCCAGAGAGTGAAATCATTGTGGACCCAAAGAAACAAGAGTTGATTTCCAAGTTGAA 657
Query 714 AACAGGAAAAACCTTTCTTAGGAACCAAGAACCAGAGAAAGCTTATACAGAGTTCAAGAT 773
|||||| ||||||||||| |||||||||||||||||| |||| ||| |||||||||||||
Sbjct 658 AACAGGTAAAACCTTTCTGAGGAACCAAGAACCAGAGCAAGCGTATGCAGAGTTCAAGAT 717
Query 774 AGCTTTGGAACTTGCCCAGAGTCTCAAAGACCCCACCGAAGAAAAGAAGGCTGCAAGAGG 833
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 AGCTTTGGAACTTGCCCAGGGTCTCAAAGACCCCATCGAAGAAAAGAAGGCTGCAAGAGG 777
Query 834 CCTAGGCGCCTCGCTGCAGCGCCAAGGGAAGTATAGGGAAGCCATACAGTATCACTCCAT 893
| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTAGGAGCCTCGCTGCAACGTCAAGGGAAGTATAGGGAAGCCATACAGTATCACTCCAT 837
Query 894 GGTTCTAGCCATCTCAAAGAGGGAAAGTGAAGATTCTGGAATCACTGAAGCATATGGAGC 953
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 GGTTCTAGCCATCTCAAAGAGGGAAGGTGAAGATTCTGGAATCACTGAAGCATATGGAGC 897
Query 954 TATTGCAGACTGTTATACCGAGCTGGGAGATCTCGAGAAAGCTGGAAAGTTCTATGATAC 1013
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 TATTGCAGACTGTTATACCGAGCTGGGAGATCTCGAGAAAGCTGGAAAATTCTATGATAC 957
Query 1014 GTACATTGCTCGGTTAGAGACTGACTGATCCTTCCGCAATGtttttt-tCTTTGTTGTCT 1072
||||||| ||||||||||||| ||||||| ||||| ||| || |||| ||| |||||||
Sbjct 958 GTACATTTCTCGGTTAGAGACAGACTGATTCTTCCTCAAGGTCTTTTGTCT--GTTGTCT 1015
Query 1073 GTTTATGTTCATGTAA 1088
|||| |||||||||||
Sbjct 1016 GTTTGTGTTCATGTAA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5