BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14130.1
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478828 jgi|Araly1|478828|fgenesh2_kg.3__1529__AT3G14130.1 1834 0.0
> Ahg478828 jgi|Araly1|478828|fgenesh2_kg.3__1529__AT3G14130.1
Length=1444
Score = 1834 bits (993), Expect = 0.0
Identities = 1205/1305 (92%), Gaps = 23/1305 (2%)
Strand=Plus/Plus
Query 153 ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAGCTGGCCAAACAGGCCCTCCCTAAG 212
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 146 ATGGATCAAATCGTTAACGTAGATGAGTTTCAAGAGCTGGCCAAGCAGGCTCTCCCTAAA 205
Query 213 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAAAATGTC 272
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 206 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTTAAGGAAAATGTG 265
Query 273 CAAGCTTTCCGTAGAATCATGTTTAGGCCTAGGGTTCTTGTTGATGTGAGCAACATAGAT 332
| |||||||||| |||||||| |||||||| | |||||||||||||||||||| ||||||
Sbjct 266 CTAGCTTTCCGTCGAATCATGCTTAGGCCTCGAGTTCTTGTTGATGTGAGCAAAATAGAT 325
Query 333 ATGTCTACAAGTATGTTGGGTTACCCAATCTC-AGCTCCCATCATGATTGCTCCAACAGC 391
||||| |||| || |||||||||||| |||| || ||| ||||||||||||||||||||
Sbjct 326 ATGTCCACAACCATATTGGGTTACCCAGTCTCAAG-TCCTATCATGATTGCTCCAACAGC 384
Query 392 AATGCATAAGTTGGCTCATCCTAAAGGAGAAATCGCCACAGCGAAAGCTGCAGCTGCGTG 451
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 385 AATGCATAAGTTGGCTCATCCTGAAGGAGAAATCGCCACCGCGAAAGCTGCAGCTGCGTG 444
Query 452 TAACACTATCATGATAGTATCATTCATGTCTACTTGCACTATTGAGGAGGTTGCTTCCAG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 445 TAACACTATCATGATAGTATCATTCATGTCTACTTGCACTATTGAGGAGGTTGTTTCCAG 504
Query 512 TTGTAACGCTGTTCGGTTTCTTCAAATATATGTGTACAAGAGACGTGATGTAACAGCTCA 571
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 505 TTGTAATGCTGTTCGGTTTCTTCAAATATATGTGTACAAAAGACGTGATGTAACTGCTCA 564
Query 572 GATTGTGAAAAGAG-CTGAAAAAGCTGGATTCAAGGCTATAGTTCTAACTGTTGATGTTC 630
||| ||||||| || |||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 565 GATCGTGAAAA-AGGCTGAGAAAGCTGGATTCAAGGCCATAGTTCTGACTGTTGATGTTC 623
Query 631 CCAGACTTGGTAGAAGGGAAGCAGATATAAAGAACAAAATGATATCCCCACAGCTGAAGA 690
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 624 CTAGACTTGGTAGAAGGGAAGCTGATATAAAGAACAAAATGATATCCCCGCAGCTGAAGA 683
Query 691 ATTTTGAAGGCTTAGTTTCAACCGAAGTCCGACCTAATGAAGGTTCAGGGGTTGAAGCCT 750
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 684 ACTTTGAAGGTTTAGTTTCAACCGAAGTCCGACCTAATGAAGGTTCAGGGCTTGAAGCCT 743
Query 751 TTGCCTCTAGTGCATTTGATGCTTCGTTAAGCTGGAAGGATATCGAATGGTTAAGATCTA 810
|||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 744 TTGCCTCTAGTGCACTTGATGCTTCGTTAAGTTGGAAGGACATCGAATGGTTAAGATCTA 803
Query 811 TTACAAAGTTGCCAATTCTGGTCAAAGGGTTACTCACACGTGAAGACGCTCTTAAGGCTG 870
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 804 TTACAAAGTTGCCAATTCTGGTCAAAGGGTTACTCACACGTGAAGATGCTCTTAAGGCTG 863
Query 871 TTGAAGCCGGTGTAGATGGAATAGTGGTATCCAACCACGGGGCTCGCCAGCTCGACTATT 930
||||| | ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 864 TTGAAACTGGTGTAGATGGGATAGTTGTATCTAACCACGGGGCTCGCCAGCTCGACTATT 923
Query 931 CCCCGGCTACGATAACTGTTTTAGAAGAGGTTGTTCATGCTGTGAAAGGTAGGATTCCGG 990
|||| ||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 924 CCCCTGCTACAATAACTGTTTTAGAAGAGGTTGTTCATGTTGTTAGAGGTAGGATTCCGG 983
Query 991 TTTTGCTTGATGGAGGAGTAAGACGAGGAACAGATGTTTTCAAAGCGCTGGCGCTCGGAG 1050
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 984 TCTTGCTTGATGGAGGAGTAAGAAGAGGAACAGATGTTTTCAAAGCGCTGGCGCTTGGAG 1043
Query 1051 CACAAGCTGTTCTTATAGGGAGGCCTATAGTCTATGGGCTTGCAGCTAAGGGTGAAGATG 1110
||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||
Sbjct 1044 CACAAGCTGTTCTTATAGGGAGGCCAATTGTGTATGGGCTTGCAGCAAAGGGTGAAGATG 1103
Query 1111 GAGTGAAAAAAGTGATTGATATGCTGAAAAATGAGTTTGAGATTACTATGGCCCTTTCTG 1170
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1104 GAGTGAAAAAAGTGATTGAGATGCTGAAGAATGAGTTAGAGATTACTATGGCCCTTTCTG 1163
Query 1171 GCTGTCCAACCATTGATGACGTAACCAGAAACCATGTTAGGACAGAGAATGAGAGAATTA 1230
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1164 GTTGTCCAACCATTGATGACATAACCAGAAACCATGTTAGGACAGAGAATGAGAGACTTC 1223
Query 1231 AATCTATGCTCTGATCC-------TAAAACCAACAGATCTAGTCTCAGAGACTT-AATCA 1282
||||||||||||||| |||||||||||||||| ||||||||||||| || ||
Sbjct 1224 GCTCTATGCTCTGATCCAAAAAAGTAAAACCAACAGATCTGGTCTCAGAGACTTTAA-CA 1282
Query 1283 GACAGTTGGACAACAGTATGAAATACTGTCA-ATGCACATAAATAA-AAAGCTCTATTTC 1340
||||||||||||| ||| ||||||||||||| | |||||||||||| |||||||||||||
Sbjct 1283 GACAGTTGGACAAGAGTCTGAAATACTGTCACA-GCACATAAATAATAAAGCTCTATTTC 1341
Query 1341 AAGACAA----T-AGTACGTTTGGACTTTGTTCTGttttttttttttCTGATTAATTTGC 1395
||||||| | ||||||||||||||||| ||| |||||||| ||| || ||||||
Sbjct 1342 AAGACAAGGGATTAGTACGTTTGGACTTTGCGATGTATTTTTTTT--CTGCTTGATTTGC 1399
Query 1396 TGGTTATAAACTTATAATAAGCCTTTGAGAGAAGTGGCTTTCTGA 1440
|||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1400 TGGTTATAAACTTATAATAAGCCTATGAGAGAAGCGGTTTTCTGA 1444
Score = 215 bits (116), Expect = 8e-55
Identities = 132/140 (94%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 153 ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAGCTGGCCAAACAGGCCCTCCCTAAG 212
||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 6 ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAACTGGCCAAACAGACCCCCCCTAAA 65
Query 213 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAAAATGTC 272
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 66 ATGTACTATGATTTCTACAATGGAGGAGCAGAAGATCAACACACTCTCAAGGAAAATGTG 125
Query 273 CAAGCTTTCCGTAGAATCAT 292
| ||||||||||||||||||
Sbjct 126 CTAGCTTTCCGTAGAATCAT 145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53935786920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5