BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14160.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478829 jgi|Araly1|478829|fgenesh2_kg.3__1530__AT3G14160.1 1384 0.0
> Ahg478829 jgi|Araly1|478829|fgenesh2_kg.3__1530__AT3G14160.1
Length=1260
Score = 1384 bits (749), Expect = 0.0
Identities = 919/998 (92%), Gaps = 24/998 (2%)
Strand=Plus/Plus
Query 561 ATGTATTGTGATCTTGTGAATAGGGTGAATGATGTTACGTTGTCTTGCCAGGAGTCTGTG 620
||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||
Sbjct 1 ATGCATTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGTTTTGCCAGGAGTCTGTG 60
Query 621 TCTTCTACAGTTGTTCAGAAG-GTTGAGCTTTCTAGTGTTGAGGATCAAAAGAGTGCTCC 679
|| || | || | ||| ||||||||||||||||||||||| || ||||||||||
Sbjct 61 TC-TC--C---TG--C--AAGTGTTGAGCTTTCTAGTGTTGAGGAGCATAAGAGTGCTCA 110
Query 680 AAAGGCTGATGGGGCAGGGAACTCTTCAAATGAAAGCAGTACGAGACATTTTGATATCTT 739
||||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 111 AAAGGCTGATGAGGCAGGGAACTCTTCAAATGAAAGCAGCACAAGACATTTTGATCTCTT 170
Query 740 TCTCGA-GAAGAAGGGGATAGTACTCAAGCCCAACCTTCTGG-TTCTGAGCAGAGAAAAG 797
|||| | |||||||||||||||||| || |||| ||| ||| | || ||||| ||||
Sbjct 171 TCTC-ATGAAGAAGGGGATAGTACTAAAACCCAGTCTTATGGAAAC-GAACAGAGTAAAG 228
Query 798 AAGAAAGCAGCTAAAGGGTACAGTGGAACTGTTATTAGACCTGGAATGGTACTTCTCAAG 857
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 229 AAGAAAGCAGCTAAAGGGTACACTGGAATTGTTATTAGACCTGGAATGGTTCTTCTCAAG 288
Query 858 AACTACTTGTCAATCAATGATCAAGTAATGATTGTGAACAAATGCCGTCGGCTGGGTTTG 917
||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 289 AACTACTTGTCAATCAATGATCAAGTAATGATTGTTAACAAATGCCGTCAGCTATGTTTG 348
Query 918 GGTGAAGGTGGCTTCTATCAACCAGGTTACAGGGATGAAGCAAAATTGCATTTGAAAATG 977
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 349 GGTGAAGGGGGCTTCTATCAACCAGGTTACAGGGATGAAGCGAAATTGCATTTGAAAATG 408
Query 978 ATGTGCCTTGGCAAAAACTGGGACCCTGAAACATCTCGATATGGAGAAACT-CGACC-AT 1035
||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||| |
Sbjct 409 ATGTGCCTTGGGAAAAACTGGGATCCTGAAACATCTCGATATGGAGAAA-TCCGACCGA- 466
Query 1036 TTGATGGTTCTACTGCGCCAAGAATTCCTGCTGAATTCAATCAGTTTGTTGAGAAAGCAG 1095
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 467 TTGATGGTTCTACTCCGCCAAAAATTCCTGCTGAATTCAATCAGTTTGTTGAGAAAGCAG 526
Query 1096 TTAAAGAATCACAGTCCCTAGCGG-C-C-TCAAATTCAAAGCAGACAAAGGGAGGAGATG 1152
|||||||||||||||||||||||| | | |||||||| ||| |||||||||||| |||||
Sbjct 527 TTAAAGAATCACAGTCCCTAGCGGCCTCATCAAATTCCAAGGAGACAAAGGGAGAAGATG 586
Query 1153 AAATACCATTTATGTTACCTGACATCTGTATTGTTAACTTCTACTCATCCACCGGGAGAC 1212
||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 587 GAATACCATTTATGTTACCTGACATCTGTATTGTTAACTTCTACACATCTACAGGGAGAC 646
Query 1213 TTGGTCTCCATCAGGACAAAGATGAGAGCGAAAATTCCATCCGGAAGGGATTACCTGTTG 1272
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 647 TTGGTCTCCATCAGGATAAAGATGAGAGCGAAAATTCCATTCGGAAGGGATTACCTGTTG 706
Query 1273 TTTCATTTTCTATTGGAGATTCAGCCGAGTTCTTGTATGGTGATCAGAGGGATGAAGACA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTTCATTTTCTATTGGAGATTCAGCCGAGTTCTTGTATGGTGATCAGAGGGATGAAGACA 766
Query 1333 AGGCAGAAACGTTAACCTTGGAGTCTGGAGATGTTCTATTATTCGGTGGAAGATCAAGAA 1392
|||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 767 AGGCTGAAACGTTAATCTTGGAGTCTGGAGATGTTCTAATATTCGGTGGAAGATCAAGAA 826
Query 1393 AAGTCTTCCATGGCGTCAGATCAATTCGTAAGGATACTGCCCCCAAGGCTCTTCTTCAGG 1452
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||
Sbjct 827 AAGTCTTCCATGGCGTCAGATCAATTTGTAAAGATACTGCCCCCAAGCCTCTTGTTCAGG 886
Query 1453 AAACAAGTCTCCGACCAGGTCGTCTGAATTTGACTTTTAGGCAGTATTAGCCCAAAGCTA 1512
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 887 AAACGAGTCTCCGACCAGGTCGTCTGAATTTGACTTTTAGACAGTATTAGCCCAAAGCTA 946
Query 1513 GAAACTTTGGCAATGCATCTAG-AGCTGTCACCTGCTT 1549
| |||||||| ||| |||||| | |||||||||||||
Sbjct 947 GCAACTTTGGTTATGTATCTAGCA-CTGTCACCTGCTT 983
Score = 305 bits (165), Expect = 6e-82
Identities = 236/269 (88%), Gaps = 9/269 (3%)
Strand=Plus/Plus
Query 1642 TCCACACACGGTCTGTGTTGTATTATAAGGTCTTGGTAATATGATTATCCTTTGGTTTTC 1701
|||||||||| |||||||| |||||||| ||||| | |||||| | ||||||||
Sbjct 999 TCCACACACGATCTGTGTTATATTATAACGTCTTTGCAATATG---A----TTGGTTTTT 1051
Query 1702 CTCTTTCTTCTCCAGAATTGCTGCATGGATCCAGTATCTATCTCTTCTTCTAAATTAGAT 1761
||||||||||||| || | || ||||||||||||| |||||| |||||||| ||||||||
Sbjct 1052 CTCTTTCTTCTCCGGAGTAGCAGCATGGATCCAGTGTCTATCGCTTCTTCTTAATTAGAT 1111
Query 1762 TGTTCTGATTTGTTT--TAAAATCACTGTTTCTCATTTTATTTATCTCTTCTGTCTACCA 1819
|||| || ||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1112 TGTTATGTTTTGTTTCAAAAAATTACTGTTTCTCAGTTTATTTATCTCTTCTGTCTACCA 1171
Query 1820 TTTCCTCCAACCCATTCTACCTTTTCAACTTTGTAAGAATTGCAGAAGATTTTGTGAGTC 1879
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1172 TTCCCTGTAACCCATTCTACCTTTTCAACTTTGTAAGAATTGGAGAAGATTTTGCGATTC 1231
Query 1880 TGGTTGAAATTGTACTTGTCTTGTTTTCC 1908
|||||||||||||||||||||||||||||
Sbjct 1232 TGGTTGAAATTGTACTTGTCTTGTTTTCC 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5