BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14170.1
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478830 jgi|Araly1|478830|fgenesh2_kg.3__1531__AT3G14170.1 2658 0.0
> Ahg478830 jgi|Araly1|478830|fgenesh2_kg.3__1531__AT3G14170.1
Length=1802
Score = 2658 bits (1439), Expect = 0.0
Identities = 1687/1806 (93%), Gaps = 19/1806 (1%)
Strand=Plus/Plus
Query 1 TTACTTAGCTGACATGCAAAGATAGCGAAGATGCTCCATCATCAAGGAACAAAGAATCCA 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTACTTACCTGACATGCAAAGATAGCGAAGATGCTCCACCATCAAGGAACAAAGAATCCA 60
Query 61 ACCAAAAA--ACAG-A-A-ACGTTTCTTTATTCTCTCTGTTGTAAAATTCAATT-TCACA 114
|||||||| | || | | || |||||||||| |||||||||||||||| ||| |||||
Sbjct 61 ACCAAAAATCAAAGTAGACACCTTTCTTTATTGGCTCTGTTGTAAAATTC-ATTCTCACA 119
Query 115 CTGTTCAATTTCCAAGAATGGCTTCTCTTACGCCAAGAGTGTTAATCAAG-TTACTCGAG 173
||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 120 CTGTTCAGTTTCCAAGAATGGCTTCTCTTACGCCTAGAGTGTTAATCAAGCTT-CTCGAG 178
Query 174 ACGATGAACACCAACATCAAGGTACGAGGGGAATATAGGTCTGTTCTATTGCAGGTAATC 233
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 179 ACGATGAACACCAACATCAAGGTTCGAGGCGAATATAGGTCTGTTCTGTTGCAGGTAATC 238
Query 234 AGCATTGTCCCTGCTTTAGCTGGCTCGGAGCTTTGGCCAAACCAAGGCTTTTTCATCAAA 293
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 239 AGCATTGTCCCTGCTTTAGCCGGCGCAGAGCTTTGGCCAAACCAAGGCTTTTTCATCAAA 298
Query 294 GTCTCAGATTCTTCTCACTCCACATATGTCTCATTGAGCAACGAAGACAACGAACTTATC 353
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 299 GTGTCAGATTCTTCTCACTCCACATATGTCTCGTTGAGGAACGAAGACAACGAACTTATC 358
Query 354 TTGAACAACAAACTGGGAATAGGACAATTCTTCTACGTTGATAAGCTTGATGCTGGGACA 413
|||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 359 TTGAACAACAAATTGGGATTGGGACAGTTCTTCTACGTTGATAAGCTTGAAGCTGGAACA 418
Query 414 CCTGTTCCTGTATTGGTGGGAGTTAGACCGATCTCTGGACGCCATCCTTTTGTAGGAAAT 473
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 CCTGTTCCTGTATTGGTGGGAGTTAGACCGATTTCTGGACGCCATCCTTTTGTAGGAAAT 478
Query 474 CCCAAAGATTTGATGCAGATGTTGGTACCAAGTGAGACAACACCTCGGGAAGAAGAATAT 533
||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||| ||
Sbjct 479 CCCAAAGATTTGATGCAAATGTTGGTACCTAGTGAGACAACACCTCTGCAAGAAGAAAAT 538
Query 534 CACAACCAGAAGAAGAAAGATGGTGCAAGATCAAACATAGTGGAGAATATAAGAAAACAT 593
|||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||
Sbjct 539 CACAACCAGAAGAAGAAAGATGGTGCGAGATCAAACATGGTTGAGAATACAAGAAAACAT 598
Query 594 CAACCTTTTGTAATCAAGGAAGAGAAGACAGGTGTGGCTTCACGTTATATGAAGGGTA-- 651
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 599 CAACCTTTTGTAATCAAGGAAGAGAAGACAGGTGTGGCGTCAAGATATATGAAGGGTATT 658
Query 652 -TTTCAAATTCAAAGGCAAGTGGATCAGACTCAAGTAGTGGGGGTAGCAACAATGAGGGT 710
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 659 GTTTCAAATTCAAAGGCAAGTGGATCAGACTCGAGTAGTGGCGGTAGCAACAATGAGTGT 718
Query 711 GAGACTGGATCGATAATGGTGGCTAAGAAAGTTGGTGTATTGGCTAAAGGGAAACAAAGG 770
|||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||
Sbjct 719 GAGACTGGATCGATAATGGTTGCTAAGAAAGCTGGTGGATTGGCTAAGGGGAAACAAAGG 778
Query 771 GAGCACAAAGATCAGGCACGTCAAGCTGGTCCTTTACAATGTCGGCCTGCGACAGCTCCA 830
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 779 GAGCACAAAGATCAGGCACGTCAAGCTAATCCTCCACAATCTCGGCCTGCGACAGCTCCA 838
Query 831 ACAAAGGCAGAGCCAAAGAAACTCTCTTTGAGCTCCACTGTGAACTACATAAACAGGAAG 890
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 ACAAAGGCAGAGTCAAAGAAACTCTCTTTGAGCTCCACTGTGAACTACATAAACAGAAAG 898
Query 891 AGTAATTCTGCTGAGGATGCATCATGGAGCTCTCTGCCTGTTAGTCTATCAAAATTGGGT 950
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGTAATTCTTCTGAGGATGCATCATGGAGCTCTCTGCCTGTTAGTCTATCAAAATTGGGT 958
Query 951 AAAGGAATGCTGAGAAGGAGAAATTTAGCTGCTCTCATAGCCGCAGAAGTGCAAAGAGAG 1010
|||||| |||||||||| ||||||||||||||||| || ||| |||||||||||||||||
Sbjct 959 AAAGGAGTGCTGAGAAGAAGAAATTTAGCTGCTCTAATTGCCACAGAAGTGCAAAGAGAG 1018
Query 1011 GCATTGGCTGCTTCACATCTCATCAAATGCATCAGTATGTTTGCTGAACTCAGCTCAAAT 1070
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 GCATTGGTTGCTTCACATCTTATCAAATGCATCAGTATGTTTGCTGACCTCAGCTCAAAT 1078
Query 1071 GCTTCACCAAAGAATCCACATACCTCTCTCAGAAACTTCTTCACCCTCCAGAGTATCCTT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCTTCACCAAAGAATCCACATACCTCTCTCAGAAACTTCTTCACCCTCCAGAGTATCCTT 1138
Query 1131 GACCAAGTACAGGTTACAGTTGTAGCATCGAAAGATAAATCATTCCAACCGGTGAATATT 1190
||||||| ||| |||||||||| || ||||||||||||||||||||| || |||||||||
Sbjct 1139 GACCAAGCACATGTTACAGTTGCAGTATCGAAAGATAAATCATTCCAGCCAGTGAATATT 1198
Query 1191 CATTCGTTATGGATGGAACCTGAAAAGTTGAGCAAAAAAGCTAGTCTATCTTCAAGCAGA 1250
||||| ||||||| ||||||||||||||| ||||||||| |||| ||| |||||||||||
Sbjct 1199 CATTCATTATGGACGGAACCTGAAAAGTTAAGCAAAAAAACTAGCCTAGCTTCAAGCAGA 1258
Query 1251 GCCACAATGAAGCCTTCAAAAGCTCTAACAGAAGCCGAAAAGCTAGAATGGGTTAAGGGA 1310
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCACAACAAAGTCTTCAAAAACTCTAACAGAAGCCGAAAAGCTAGAATGGGTTAAGGGA 1318
Query 1311 AATGGCACAGAAGAAATAAAAGAACTGACAAACACTTTGAAACGAGAAACAAGAAGCTGG 1370
|||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||
Sbjct 1319 AATGGCACAGAAGAGATAAAAGAACTGAGAAGCACTTTGAAACGAGAAACCAGAAGCTGG 1378
Query 1371 TTTTTGAAATTCTTGGAAGATGCATTAGATACTGGATTACATGCTACTGTTCCGGAGAAG 1430
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1379 TTTTTGAAATTCTTGGAAGATGCATTAGATACTGGATTACATGCTAGTGTTCCGGAGAAG 1438
Query 1431 AAAGGAAAAACCAAAGGAGCGCGACTAGCGGAACCAGATAATCATATTGCCGAGACTTTA 1490
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1439 AAAGGAAAAACCAAAGGAGCGCGACTAGCGGAACCAGATAATCATATTGCTGAGACATTA 1498
Query 1491 TCCCAACTTAAGCAAGCAAACGAATGGCTGGAAAAAGTTAAAAATGACAATCTCTCTAGT 1550
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1499 TCCCAACTTAAGCAAGCAAACGAATGGCTGGAAAAAGTTAAAAATGATAATCTCTCTAGT 1558
Query 1551 GATAATTCTTTGTTAGAGAATATAGAACGATTGAAGAAGAAAATATATTCTTGCTTGCTA 1610
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1559 GATAATTCTTTGTTAGAGAATATAGAACGATTGAAGAAGAAAATATACTCTTGCTTGCTA 1618
Query 1611 CTTTATGTGGATTCAGCTGCATCAGCTATTGGAGTATA---A-CCACGTGATGGAAAATA 1666
|||||||| ||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 1619 CTTTATGTAGATTCAGCTGCATCAGCTATTGGAGTATAGGCAACCTCGTGATGGACCATA 1678
Query 1667 CAACTGATATGGTGTGATAAGTTGCCTAGCAGCAATGAATTAACTTTACACATCAAACTA 1726
|||| ||||||||||| |||| ||||||||| ||||||| ||| ||||||||||||||||
Sbjct 1679 CAACCGATATGGTGTGCTAAGCTGCCTAGCAACAATGAAATAATTTTACACATCAAACTA 1738
Query 1727 GAAGATAAGCTATA-TACATTGTGTGCGCTTATTTATTGTGTATAATTGAAAAAGAAACC 1785
||| |||||||||| || ||||||||||| |||||||||||||||| ||||||||| |
Sbjct 1739 GAACATAAGCTATACTA--TTGTGTGCGCTAATTTATTGTGTATAATACAAAAAGAAATC 1796
Query 1786 AGACAT 1791
||||||
Sbjct 1797 AGACAT 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67534004385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5