BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14172.1
Length=4505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478831 jgi|Araly1|478831|fgenesh2_kg.3__1532__AT3G14172.1 5044 0.0
> Ahg478831 jgi|Araly1|478831|fgenesh2_kg.3__1532__AT3G14172.1
Length=4415
Score = 5044 bits (2731), Expect = 0.0
Identities = 3096/3265 (95%), Gaps = 53/3265 (2%)
Strand=Plus/Plus
Query 1229 AAATGATGAAGAAGAGGAAAAAAGTACGGTACAAAATGAGCCTTTAGTGAGTCAGCCTAG 1288
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AAAGGATGAAGAAGAGGAAAAAAGTACGGTACAAAATGAGCCTTTAGTGAGTCAGCCTAG 1254
Query 1289 GCAACTCACGAGACGGCTTAGCGTGCAGGAGAGGATCAGCATGTTTGAAAACAAGCAGAA 1348
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACAACTCACGAGACGGCTTAGTGTGCAGGAGAGGATCAGCATGTTTGAAAACAAGCAGAA 1314
Query 1349 AGAGAACTCTGGAGAGAAAACAGCTGTGGCAAAATCTACTGAGCTGAAAAGACTTTCTTC 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGAGAACTCTGGAGAGAAAACAGCTGTGGCAAAATCTACTGAGCTGAAAAGACTTTCTTC 1374
Query 1409 TGATTTATCATCTTCTGCAGGCATGGAAAAGGTTGTGGTACGAAGATGGAGTGGTGCTAG 1468
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TGATATATCATCTTCTGCAAGCATGGAAAAGGTTGTGGTACGAAGATGGAGTGGTGCTAG 1434
Query 1469 TGACATGAGCATCGATTTGGGAAATGACAGGAAGGATGATACGGGTGATAGTCCACTGTG 1528
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1435 TGACATGAGCATTGATTTGGGAAATGACAGGAAGGATGATACTGGTGATAGTCCACTGTG 1494
Query 1529 CACTCCCTCGTCATCTTCAGTGTCCAAAGATGGAAGTGGTGCATCCTCAAAACAATTTGT 1588
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1495 CACTCCCTCGGCATCTTCAGTGTCCAAAGATGGAAGTGGTGCATCCTCGAAACAATTTGT 1554
Query 1589 CGGCTACAATAAAAAAGAGCAGAATGGATTGAGCCATGCTGCGAATCCTCATAGGAATGA 1648
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1555 CGGCTACAACAAAAAAGAGCAGAATGGATTGAGCCATGCTGCGAATCCTCCTAGGAATGA 1614
Query 1649 GGAAGAATGTACTTCCAACAATGGTGGTGACTGGGGAATGGATGAAGTAGAGTCTCAAAA 1708
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1615 GGAAGAATGTACTTCCAACAATGGTCGTGACTGGGGAATGGATGAAGTAGAGTCTCAAAA 1674
Query 1709 TTCAAGTTCTACTTTCTTACCCAAAGACAAGGAGGTAGACTTGAATGTGCCATTTAG-AA 1767
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||| || ||
Sbjct 1675 TTCAAGTTCTACATTCTTACGAAAAGACAAGGAGGTAGACTTGAAAGTGCCATTGAGCAA 1734
Query 1768 CGAATAATCAAGTGAGACATCAAGGAAATTCTCCGGATCGATATTTGGAGAAGAATTCCA 1827
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1735 -GAATAATCAAGTGAGACATCAAGGAAATTCTCTGGATGGATATTTGGAGAAGAATTCCA 1793
Query 1828 AGTATAAATTCCATGAGAAGAATCCCAGAGCCAGTTCAGATTACACAGGGAATGCAAATA 1887
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1794 AGTATAAATTCCATGAGAAGAATTCCAGAGCCACTTCAGATTACACAGGGAATGCAAATA 1853
Query 1888 TAAATGATGATGCGAACAACCAGATGAGCGATTTTATATCAAACAGGCAGAACCAGATAC 1947
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1854 TAAATGATGATGCGAACAACCAAATGAGCGATTTTATATCAAACAGGCAGAACCAGATAC 1913
Query 1948 AGTTTAGGGATCCTCAGAGCCATTCATTGTCTACATTACAGCAGTTAGGTGGCACTGAAC 2007
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1914 AGTTTAGGGATCCTCAGAGCCATTCATTTTCTACATTACAGCAGTTAGGTGGTACTGAAC 1973
Query 2008 CTATTATCACAAGTGTTCAGAGCAATGGAGTAACTGCGGAGTCTCCGAGGAAAGAACTAA 2067
||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1974 CTAATATCACAAGTGTTCAGAGCAATGGAGGAACTGCGGAGTCTCCTAGGAAAGAACTAA 2033
Query 2068 TGCCTTCGGATAGGCAATCACCACTTCTTGAGGATCGCCAGAGAAAGACACCGTTTTCTG 2127
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||
Sbjct 2034 TGCCTTCGGATAGGCAATCACCAGTTCTTGAGGATCGCCAGAGAAAGACAGCGGTTTATG 2093
Query 2128 GAGGTTCTGAACAGATGAAAAGGCCGCATAGTAGAAGACCTGAAATGGGTTCTGCTGCTG 2187
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 2094 GAGGTTCTGAACAGATGAAAAGGCCGCATAGTAGAAGAACTGATATTGGTTCTGCTGCTG 2153
Query 2188 TAAATACAAAGCCATCTGCAGCCATTAATAGTGTTTCAGATATCTCCGAGAGTGATACTC 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TAAATACAAAGCCATCTGCAGCCATTAATAGTGTTTCAGATATCTCCGAGAGTGATACTC 2213
Query 2248 TGATCCAAGTGTCTCCAACAGAGCAAGTTCAAAGGGCAAGGCCGTCTAAGGGAAGTCAAG 2307
||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2214 TGAACCAATTGTCTCCAACAGAGCAAGTTCAATGGGCAAGACCGTCTAAGGGAAGTCAAG 2273
Query 2308 AGCTGAATGACGAATTGAAAGTGAAAGCAAACGAGCTTGAAAAGCTATTTGCTGAACATA 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 AGCTGAATGACGAATTGAAAGTGAAAGCAAACGAGCTTGAAAAGCTATTTGCTGAACATA 2333
Query 2368 TGCTCCGTGTGCCTGGGGATCAATCCAGTTCTGTCCGTAGAGGTAAGCCCGGAAAGCCAA 2427
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2334 TGCTCCGTGTGCCGGGGGATCAAACCAGTTCTGTCCGTAGAGGTAAGCCCGGAAAGCCAA 2393
Query 2428 GTGAACAGGCTGTGACTTCACAGTTGAGAAGGCCTGTAGCGCAGGATCTATCATCTGTTC 2487
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2394 GTGAACAGGCTGTGACTTCACAGCTGAGAAGGCCTGTAGCGCAGGATCTATCATCTGTTC 2453
Query 2488 AAATTTCTGATCAGAAGACCCTGGCAATGCCAACTTTAACCTCCAACGATGAAGACAAGT 2547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2454 AAATTTCTGATCAGAAGACCCTGGCAATGCCAACTTTAACCTCAAACGATGAAGACAAGT 2513
Query 2548 TCAAAACTCCGCCAACAATGAAGATGGTTGTTACCAAAGACTATGGAGATACCACGAGGC 2607
|||||||||||||||||| | ||||||||||| ||| || |||||||||||||||||||
Sbjct 2514 TCAAAACTCCGCCAACAA--A-GATGGTTGTTAACAATGAATATGGAGATACCACGAGGC 2570
Query 2608 AAAATTTTCCAGAAATCAGCTTTTCTGATAATTCTAGAGGAAAGTTCTATGAGCAATATA 2667
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2571 AAAATTTTCCAGAAATCAGCTTTTCGGATAATTCTAGAGGAAAGTTCTATGAGAAATATA 2630
Query 2668 TGCAGAAAAGAGACGCAAAGCTGAAGGAAGACTGGAGTTGCAGAAGGACCGAGAAGGAAG 2727
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2631 TGCATAAAAGAGACGCAAAGCTAAAGGAAGACTGGAGTTGCAGAAGGACCGAGAAGGAAG 2690
Query 2728 CCAAATTGAAGGTGATGCAAGATATACTTGATCGCAGTAACGCTGAGATGAAAACCAAAT 2787
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2691 CCAAATTGAAGGTGATGCAAGATATACTTGATCGCAGTAACGCTGAGATGAAATCCAAAT 2750
Query 2788 TTTCTCAGTCTACAGGGAGACGTGATTCAAGTGCCCGACGTGCAGAGAAGCTTGTATACT 2847
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2751 TTTCTCAGTCTACAGGGAGACGTGATTCAAATGTCCGACGTGCAGAGAAGCTTGTATACT 2810
Query 2848 TCAATTCTAAGTTGAGTGCCAAAAAGGATCAGCATCCAATTAGTTCATTTCAGAGTGAGG 2907
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 2811 TCAATTCTAAGTTGAGTGCAAAAAAGGATCAGCATCCAATTAGCTCATTTCAGAGTGAAG 2870
Query 2908 AAGATGAGGATGGTTCCAGGAGCACCCAGAATAAAAAGCTACAACAAAATAAAAATAATT 2967
||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct 2871 AAGATGAGGATGGTTCCAGGATCACCCAAAATAAAAAGCTACAACAAAATAAAAACAATT 2930
Query 2968 TATTGATTGCTCGAACCACTGCTACGTCAGCGTCACGCTCGGCAGCCAAAGTTTCTACTC 3027
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2931 TATTGACTGCTCGAACCACTGCTACATCAGCGTCACGCTCGGCAGCCAAAGTTTCTACTC 2990
Query 3028 TCAGTGCTGTTAGGCGGAGAGGGCAATCAGAAAAACATT-TTGCACAGTCAGTCCCTAAC 3086
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 2991 CCAGTGCTGTTAGGCGGAGAGGACAATCAGAAAAAC-TTCTTGCACAGTCAGTCCCTAAC 3049
Query 3087 TTCTCCGAGATCAAAAAGGAGGGCATGAAACCAGCCTCGGGAGTTGGAAAAAATGGTGTC 3146
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 3050 TTCTCCGAGATCAAAAAGGAAGGTATGAAACCAGCCTCGGGAGTTGGAAAAAATGGTGTC 3109
Query 3147 CGCACCCAGGTGAGAAGCTCTATCCGCCCAAAAGCTGTAAATGAAGAAGAAAAGTTGCGA 3206
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 3110 CGCACCCAGGTGAGAAGCTCTATCCGCTCAAAAGCTGTAAATGAAGAAGAGAAGTTGCGA 3169
Query 3207 AGGCCGAAAATTTTCAGAAAAGGTGCTGCTGAAGCTGCTGAGTTGGCTACAGACTTTTCT 3266
||||||||| |||||||||||||||||||||| | | || | ||||||||||||||
Sbjct 3170 AGGCCGAAATTTTTCAGAAAAGGTGCTGCTGA-G-T--TG-G----CTACAGACTTTTCT 3220
Query 3267 CAATTGAAGTCAGAGGATGGTGTTTCTGTACCTCTGTATCTTGAACAGGAGCAAAGCGGG 3326
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3221 CAATTGAAGTCAGAGGATGGTGTCTCTGTACCTCTGTATCTTGAACAGGAGCAAAGCGGG 3280
Query 3327 AGAAATTTTAATAGTCATGGCACTGGTATCAGCTCTGATAATGCGCAGCTAAAGGCTTCA 3386
|||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3281 AGAAGTTTTAACAATCATGGCATTGGTATCAGCTCTGATAATGCGCAGCTAAAGGCTTCA 3340
Query 3387 GAAGAATCTGAGGCATCAGATGATATGGAGAAAGAGGGGATGGGAGAAGCGCTTGATGAC 3446
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3341 GAAGGATCTGAGGAATCAGATGATATGGAGAAAGAGGGGATGGGAGAAGTGCTTGATGAC 3400
Query 3447 ACAGAAGTTGAAGCTTTTACTGATGCAGAAAACGAAATGCCAAGACTAAGTCAGGAGTCT 3506
|| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 3401 ACGGAAGTTGAAGCTTTTACTGATGCAGAAATTGAGATGCCAAGACTAAGTCAGGAGTCT 3460
Query 3507 GAAGAATGGGGTAGTACTGGGGTTGCAAATGGTGAATCTTTTTCTCAGCTTGA-CGCTGG 3565
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 3461 GAAGAATGGGGTAGTACTGGGGTTGCAAATGGTGAATCTTTTTCTCAGCTTGAAC-CTGG 3519
Query 3566 TTCAAATACTGAATTACCTGCTGCTATGGCTTCTAGGCATCAAACCATGGGTTCAATCCT 3625
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3520 TTTAAATGCTGAATTACCTGCTGCTATGGCTTCTAGGCATCAAACCATGGGTTCAATCCT 3579
Query 3626 GGACTCACCCGGTGAAAGCACTAG-TCCATGGAATTCCCGAGTGAAGCATCGATATCCAA 3684
|||||||||||||| |||||| || |||||||||||| |||||||||||||||||| |||
Sbjct 3580 GGACTCACCCGGTGGAAGCAC-AGGTCCATGGAATTCGCGAGTGAAGCATCGATATGCAA 3638
Query 3685 ACGAGGCATCTGAACTTGATGCTTCAGTGGACTCTCCAGTTGGTAGTCCTGCTTTCTGGA 3744
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 3639 ACGAGGCATCTGAACTTGATGCTTCAGTGGACTCTCCAGTGGGTAGTCCTGCTTTTTGGA 3698
Query 3745 ACTTCTCTTCCCTTAACCATACAGAGAGCGATACAACTCAAATGAGAAAGAAATGGGGAG 3804
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 3699 ACTTCTCTTCCCTTAACCAGACAGAGAACGATACAACTCAAATGAGAAAGAAATGGGGAG 3758
Query 3805 CTGCTCAGAAACGCGCTGCTGGTGGTAATCCATCTCAAAATCAGTGC-CAACAAGATGTG 3863
||||||||||||||| ||||||||||||||||||||||| ||||| | ||||| ||||||
Sbjct 3759 CTGCTCAGAAACGCGTTGCTGGTGGTAATCCATCTCAAAGTCAGT-CACAACAGGATGTG 3817
Query 3864 ACAAAAGGGTTGAAAAGACTTTTGAATTTTGGAAGAAAAAACCGTGCGGCTGAGAGTTTG 3923
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 3818 ACAAAAGGGTTGAAAAGGCTTTTAAATTTTGGAAGGAAAAACCGTGCGGCTGAGAGTTTG 3877
Query 3924 GCTGACTGGATATCTGCTACGACGTCTGAAGGGGATGATGATACTGATGATGGAAGAGAT 3983
|||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 3878 GCTGACTGGATATCCACTACAACATCTGAAGGGGATGATGATACTGACGATGGAAGAGAT 3937
Query 3984 CTTGCAAATCGATCATCAGAAGACTTGAGAAAGTCGAGAATGGGATTCTTGCAGAGCCAC 4043
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3938 CTTGCAAATCGATCATCAGAAGACTTGAGAAAGTCGCGAATGGGATTCTTGCAGAGCCAC 3997
Query 4044 CCCTCTGGTGATAGCTTCAACGAGAGCGAGCTATTCACTGAACACGTCCAAACCACTGGC 4103
||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 3998 CCCTCTGGTGATAGCTTCAACGAGAGCGAGCTATTCAGTCAACATGTCCAAACCACTGGC 4057
Query 4104 ACACCATTGAGCTTTAAACTGAAGGAGGATCAGACGACAGGAGCTTCTGTAAAAGCACCA 4163
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 4058 GCACCATTGAGCTTTAAACTGAAGGAGGATCAGACGTCAGGAACTTCTGTAAAAGCACCA 4117
Query 4164 AGGTCATTCTTTTCACTCTCCAATTTTCGTAGCAAAGGGAAATGATTCGAAACCAAAGAT 4223
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4118 AGGTCATTCTTTTCACTCTCCAATTTTCGTAGCAAAGGGAAATGATTCGAGACCAAAGAT 4177
Query 4224 TCATTACAGAAGTCATCAGGATCCAAGCGAATGAAAGGTAACAAATTCGCAATGCAGGCA 4283
||| |||||||| |||||||||||||||||||||||||| ||| | | | ||
Sbjct 4178 TCACTACAGAAGG--TCAGGATCCAAGCGAATGAAAGGTAA-AAA-----A--G-A--CA 4224
Query 4284 CAACAGACACGAGTATATAAGTGAAATGTTCGGAGAT-CGCAATGTGCTCTTTGTTTCGG 4342
| || | |||||||||||||||||||| ||| | ||||||||||| |||||| |
Sbjct 4225 C----GA---G--TATATAAGTGAAATGTTCGGTGATAC-CAATGTGCTCTCTGTTTCCG 4274
Query 4343 ATCAATGTATCATTGAGAATAGTCCCTCTCTTCAATATTTCTTTGTTAACTTTCTGAAGC 4402
||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 4275 ATCAATGTATCATTGAGAATAGTCCCTCT-T-C--TCTTTCTTTGTTAACTTTCTGAAGC 4330
Query 4403 CTACATTGTAAAATGTAAATTGTATCAAACCTGAAACATGTC--A-TCGATGTGATTTTG 4459
||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||
Sbjct 4331 CTACATTGTAAAATGTAAATTGTATCAAAACTTAAACATGTCTTAATCGATGTGATTTTG 4390
Query 4460 GTAGTACACTACAAACAAACAGAAA 4484
||||||||||||||||||||| |||
Sbjct 4391 GTAGTACACTACAAACAAACAAAAA 4415
Score = 1807 bits (978), Expect = 0.0
Identities = 1141/1215 (94%), Gaps = 30/1215 (2%)
Strand=Plus/Plus
Query 1 GTGATTTTTGTCTGAAGAACG---T-T-TAT-T-TCT-T-TCTCTTGATTTCACTTTCTC 51
||||||||||||||||||||| | | | | | ||| | ||||||||||||||||||||
Sbjct 1 GTGATTTTTGTCTGAAGAACGTTTTCTCTCTCTCTCTCTCTCTCTTGATTTCACTTTCTC 60
Query 52 TCTCTAAAGTAGATTTTTGACAAAGATAGATTACGGCGGAAGGAAGGAGACACACAATGA 111
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TCTCTAAAGTAG-TTTTTGACAAAGATAGATTACGGCGGAAGGAAGGAGACACAGAATGA 119
Query 112 TGGGAGAGATATTGAATCCATCAGCGGAAGTGAAATTAATTACGAAGTTGACTTGAGAGT 171
||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 120 TGGGAGAGAAATTGAATCCATCAGCGGAAGTG-AATTAAATACGAAGTTGACTTGAGAGT 178
Query 172 TTTGAGTGAAGCCAAAAACAGAAGAAAACAATCTTCATTGTTAGGGTTTTAATAAGCTTT 231
|||||||||||||||||||||||| ||||||||| |||||||| || |||||
Sbjct 179 TTTGAGTGAAGCCAAAAACAGAAG-AAACAATCTCCATTGTTA-GG---------GCTTT 227
Query 232 AAGAAGAGGATGCTGAATATAGAAAGCAGAGAAAGA-ATCTCGACAATGATAGTAACTAT 290
|||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 228 AAGAAGAGGATGCTGAGTATAGAAAGCAGAGAAAGAGA-CTCGACAATGATAGTTACTAT 286
Query 291 TCGAATGTGAATCTGAAAGAGACTGATTCATCGGAAACAGACGAAGATCTCATTTTGTTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 287 TCGAATGTGAATCTGAAAGAGACTGATTCATCGGAAACAGACGAAGATCTCA-TTTGTTT 345
Query 351 -CTATTCT-CAGGGGGAAGACTGAAA-ATTTTGTGTAAAGGGGTCAAGATGAGACCAGCT 407
|| | | |||||| ||||| ||| |||||||| ||||||| |||||||||||||||
Sbjct 346 GGTA-TGTGAAGGGGGGAGACT-AAAGATTTTGTGCAAAGGGGAGAAGATGAGACCAGCT 403
Query 408 ATACCTCTTGATTATGCTGTCTTCCAACTCTCTCCAAAGCGGTCAAGATGTGAATTGTTT 467
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 404 ATACCACTTGACTATGCTGTCTTCCAACTCTCCCCAAAGCGGTCAAGATGTGAATTGTTT 463
Query 468 GTATCTACTACGGGAAATACTGAGAAACTTGCTTCTGGACTGGTGAAACCATTTGTTGCT 527
|| |||||| |||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 464 GTCTCTACTGCGGGGAGTACTGAGAAACTTGCTTCTGGACTGGTAAAACCATTTGTTGCT 523
Query 528 CATTTGAAAGTTGCAGAAGAACAGGTTTCCCGGGAAGTTCAGTCTATCAGGCTAGAAGTT 587
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 524 CATTTGAAAGTTGCAGAAGAACAGGTCGCCCGGGAAGTTCAGTCTATCAGGCTAGAAGTT 583
Query 588 GAAAGCAACAAAAATGCTGGAACCTGGTTTACGAAAGGGACCCTCGAAAGGTTTGTACGC 647
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 584 GAAAGTAACAAAAATGCTGGGACCTGGTTTACGAAAGGGACCCTTGAAAGGTTTGTACGC 643
Query 648 TTTGTTAGTACCCCAGAGGTTCTGGAATTGGTTAGCGCTTTGGATGTGGAAATGTCTCAG 707
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 644 TTTGTCAGTACCCCAGAGGTTCTGGAATTGGTTAGTGCTTTGGACGTGGAAATGTCTCAG 703
Query 708 TTGGAGGCTGCTCGGAAAATATATGGCGAGGGGACTAGTGATCAGCGATCTAGTGCAAAA 767
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 704 TTGGAGGCTGCCCGGAAAATATATGGCGAGGGGACTGGTGATCAGCGATCTAGTGCAAAA 763
Query 768 GATAGCACAGATACTACTCCAGCCGCTGATGTGACAAAAAAGGAGTTACTGAAAGCTATT 827
||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 764 GATGGCACAGAAACTACACCAGCTGCTGATGTGACAAAAAAGGAGTTACTGAAAGCTATT 823
Query 828 GATTTACGGCTAGCAGCAGTTAGACAGGACTTAGCAACTGCCTGTAATCGTGCTTCGGCT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GATTTACGGCTAGCAGCAGTTAGACAGGACTTAGCAACTGCCTGTAATCGTGCTTCGGCT 883
Query 888 GCTGGTTTCAACCCTATCACTGTCTCCGAACTTAGTCAGTTTGCTGATCGATTTGGGGCC 947
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 884 GCTGGATTCAACCCTATCACTGTCTCCGAACTTAGTCAGTTTGCTGATCGATTTGGCGCC 943
Query 948 AATCGCTTGAATGAAGCATGCACCAAGTTTATAACACTTTGTCAGAGAAGGCCAGAGCTT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AATCGCTTGAATGAAGCATGCACCAAGTTTATAACACTTTGTCAGAGAAGGCCAGAGCTT 1003
Query 1008 ATGAGCTCTTGGAGGGTCAATCAGGAAGAGGAAGCGATACGTTCGTCATGGGAATCTGAT 1067
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1004 ATGAGCTCTTGGAGGGTCAATCAGGAAGAAGAAGCGATACGTTTGTCATGGGAATCTGAT 1063
Query 1068 ATGTCAATTGATGATCCCAGTGAAGACCCATCTAGAGACCTGGCGACAAATAGAAACCAA 1127
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1064 ATGTCAATTGATGATCCCAGTGAAGACCCATCTAGAGACCTGGCGACAAACAGAAACCAA 1123
Query 1128 CAACACAGGGAATATCAAACTGGTATGGAAGAGCAAAGCGCAACAGGAACCAGCTACTGT 1187
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1124 CAACATAGGGAATATCAAACTGGTATGGAAGAGCAAAGCGCAACAGGAACCAACTACTGT 1183
Query 1188 CAACATGAATCAAAG 1202
||||| |||||||||
Sbjct 1184 CAACAAGAATCAAAG 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170421811894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5