BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14180.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478832 jgi|Araly1|478832|fgenesh2_kg.3__1533__AT3G14180.1 2743 0.0
> Ahg478832 jgi|Araly1|478832|fgenesh2_kg.3__1533__AT3G14180.1
Length=1741
Score = 2743 bits (1485), Expect = 0.0
Identities = 1663/1747 (95%), Gaps = 20/1747 (1%)
Strand=Plus/Plus
Query 1 AAACCGAGCCGGCAACTTTACCGGTGACGGAATCTTACCTCTGACCTACCAATCACGTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAACCGAGCCGGCAACTTTACCGGTGACGGAATCTTACCTCTGACCTACCAATCACGTTA 60
Query 61 TTCCACGTCATCTCCCCGTATCTTCTCACGTCCTTCCACGTGTCCCCT-CTACTCACCGA 119
|||||||||| |||||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 61 TTCCACGTCAACTCCCCGTATCTTCTCACGTTCTTCCACGTGT-CTCTCCTACTCACCGA 119
Query 120 CGCCGTCTCCTTCCCGTTTA--CCCCTCCCGAACAGAATATTAACCCAAACCCTAACCCT 177
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGCCGTCTCCTTCCCGTTTACCCCCCTCCCGAACAGAATATTAACCCAAACCCTAACCCT 179
Query 178 ATCTCCCTCTTTCACGAGCTTCTGACTCAGATCCGGCGATATCGAATTCCATGGAGGACG 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCT-CCTCTTTCACGAGCTTCTGACTCAGATCCGGCGATATCGAATTCCATGGAGGACG 238
Query 238 ATGAAGACATCCGATCTCAGGGTTCCGATTCACCTGATCCGTCTTCCTCCCCGCCGGCGG 297
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 239 ACGAAGACATCCGATCTCAGGGTTCCGATTCACCTGATCCGTCTTCTTCGCCGCCGGCGG 298
Query 298 GACGAATCACGGTTACGGTGGCTTCGGCAGGTCCGCCTTCTTATTCTCTGACTCCTCCGG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GACGAATCACGGTTACGGTGGCTTCGGCAGGTCCGCCTTCTTATTCTCTGACTCCTCCGG 358
Query 358 GTAATTCGTCGCAGAAGGATCCGGATGCGTTGGCTCTGGCGCTGCTTCCGATTCAGGCCA 417
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CTAGTTCGTCGCAGAAGGATCCGGATGCGTTGGCTCTGGCGCTGCTTCCGATTCACGCCA 418
Query 418 GCGGTGGAGGGAATAACAGCAGTGGGAGACCAACCGGCGGCGGCGGGAGGGAGGATTGTT 477
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 GCGGTGGAGGGAATAGCAGCAGTGGGAGACCAACCGGTGGCGGCGGGAGGGAGGATTGTT 478
Query 478 GGAGCGAAGCAGCTACGGCTGTGTTGATTGATGCGTGGGGTGAGAGATACTTGGAGCTTA 537
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGAGCGAAGGGGCTACGGCTGTGTTGATTGATGCGTGGGGTGAGAGATACTTGGAGCTTA 538
Query 538 GCAGAGGGAATCTGAAGCAGAAGCACTGGAAAGAGGTGGCTGAGATTGTGAGCAGCAGAG 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 GCAGAGGGAATCTGAAGCAGAAGCACTGGAAAGAGGTGGCTGAGATCGTGAGCAGCAGAG 598
Query 598 AGGATTACGGTAAAATTCCCAAAACTGATATACAGTGTAAGAATAGGATCGATACGGTGA 657
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGATTATGGTAAAATTCCCAAAACTGATATACAGTGTAAGAATAGGATCGATACGGTGA 658
Query 658 AGAAGAAGTATAAACAAGAGAAGGTGAGAATCGCTAACGGCGGTGGCCGTAGCAGATGGG 717
|||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 659 AGAAGAAGTATAAACAGGAGAAGGTGAGAATCGCTACCGGTGGTGGCCGTAGCAGATGGG 718
Query 718 TGTTCTTCGACAAGCTTGACCGTCTGATTGGATCAACGGCGAAGATCCCGACGGCAACTT 777
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTTCTTCGACAAACTTGACCGTCTGATTGGATCAACGGCGAAGATCCCGACGGCAACTC 778
Query 778 CTGGAGTCAGC---------GGTCCTGTCGGAGGATTGCATAAGATTCCTATGGGTATTC 828
||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CTGGAATCAGCAGTGGTGGAGGTCCTGTAGGAGGATTGCATAAGATTCCTATGGGTATTC 838
Query 829 CAATGGGAAGTCGTTCGAATCTGTACCATCAGCAAGCTAAGGCTGCAACACCGCCTTTCA 888
| ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 839 CCATGGGAAATCGTTCGAATCTGTACCACCAGCAAGCTAAGGCTGGAACACCGCCTTTCA 898
Query 889 ATAATCTTGACCGGT-TAATTGGAGCTACGGCTAGAGTCTCAGCTGCTTCTTTCGGTGGC 947
||||| |||||| || ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 899 ATAATATTGACC-GTCTAATTGGAGCTACGGCTAGGGTCTCAGCTGCTTCGTTCGGTGGC 957
Query 948 AGTGGTGGAGGAGGCGGAGGAGGATCTGTCAATGTACCTATGGGAATTCCGATGAGTAGC 1007
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 AGTGGTGGAGGAGGCGGAGGAGGATCTGTTAATGTACCTATGGGAATTCCGATGAGTAGC 1017
Query 1008 CGTTCAGCTCCGTTTGGACAGCAAGGGAGGACTCTGCCACAGCAAGGTAGGACACTGCCA 1067
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1018 CGTTCAACTCCGTTTGGACAGCAAGGTAGGACGCTGCCACAGCAAGGTAGGACGCTGCCA 1077
Query 1068 CAGCAACAGCAGCAAGGGATGATGGTGAAAAGGTGTAGTGAGTCGAAACGCTGGCGTTTC 1127
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 CAGCAACAGCAGCAAGGGATGATGGTGAAAAAGTGTAGTGAGTCGAAACGCTGGCGTTTC 1137
Query 1128 AGGAAGAGGAACGCTTCTGATTCAGACTCGGAATCTGAAGCAGCAATGTCAGATGATTCC 1187
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGGAAGAGGAATGCCTCTGATTCAGACTCGGAATCTGAAGCAGCAATGTCAGATGATTCC 1197
Query 1188 GGTGACAGTTTACCACCTCCTCCTCTGTCGAAGAGGATGAAGACGGAGGAGAAGAAGAAG 1247
|||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1198 GGTGACAGTTTACCTCCTCCTCCTCTTTCGAAGAGGTTGAAGACAGAGGAGAAGAAGAAG 1257
Query 1248 CAAGATGGTGATGGAGTGGGGAACAAATGGAGGGAGCTGACTCGGGCAATCATGAGATTC 1307
|||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 1258 CAAGATGGTGATGGAGTGGGAAATAAATGGAGGGAGTTAACTCGGGCAATCATGAGATTT 1317
Query 1308 GGTGAAGCTTATGAGCAAACAGAGAATGCGAAACTGCAACAGGTGGTTGAGATGGAGAAA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGTGAAGCTTATGAGCAAACAGAGAATGCGAAACTGCAACAGGTGGTTGAGATGGAGAAA 1377
Query 1368 GAGAGGATGAAGTTCTTGAAGGAGCTTGAGTTGCAGAGAATGCAGTTCTTTGTGAAGACT 1427
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1378 GAGAGGATGAAGTTCTTGAAGGAGCTGGAGTTGCAGAGAATGCAGTTCTTTGTTAAGACC 1437
Query 1428 CAATTGGAGATATCACAACTTAAGCAGCAACATGGGAGGAGAATGGGAAACACCAGTAAT 1487
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CAAGTGGAGATATCGCAGCTTAAGCAGCAACATGGGAGGAGAATGGGAAACACCAGTAAT 1497
Query 1488 GATCATCATCACAGCCGCAAGAACAACATCAATGCGATTGTCAACAACAACAACGATTTG 1547
|||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1498 GATCATCA-CA--GCCGCAAGAACAACATCAATGTGATTGTCAACAACAACAACGATTTG 1554
Query 1548 GGTAATAACTAGAATTTAGTGATGCAGTGTCGTAATTGATATATTTTAGATTTGAGTCTT 1607
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1555 GGTAATAACTAGAGTTTAGTGATGCAGGGTCGTAATTGATATATTTTAGATTTGAGTCTT 1614
Query 1608 TAATTGTTGAAAGAGA-AACTGAAACTTATCTAGGCTTCATGAGTGTATTAATATTTTGC 1666
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1615 GAATTGTTGAAAGAGAGAACTGAAACTTATCTAGGCTTCATGCGTGTATTAATATTTTGC 1674
Query 1667 ATATCTTTCTTAACTTTGGTCATATGGAACAGATTTAACTTCACTAGATTGCCTGAGATC 1726
|||||||| |||||||| ||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 1675 ATATCTTTGTTAACTTTTGTCATATGGAACAGATTTAACATCACTAGAATGCATGAGATC 1734
Query 1727 ATTCTGC 1733
|| ||||
Sbjct 1735 ATCCTGC 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5