BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14190.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318207 jgi|Araly1|318207|fgenesh1_pm.C_scaffold_3001223 854 0.0
> Ahg318207 jgi|Araly1|318207|fgenesh1_pm.C_scaffold_3001223
Length=582
Score = 854 bits (462), Expect = 0.0
Identities = 549/589 (93%), Gaps = 14/589 (2%)
Strand=Plus/Plus
Query 143 ATGGCGAACATGAACGCTCTTCAACAAATGATCTTCCCAGACGAGAACGCTCCAATTCAT 202
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGAATATGAACGCTCTTCAACAGATGATCTTCCCAGACGAGAACGCTCCGATTCAT 60
Query 203 CGCAAAAAGTCTGTCACTGCTGCTTCTGTGAAATCCAAAGGGACTGTACTTGGTCAGAAG 262
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CGCAAAAAGTCTGTTACTGCTGCTTCTGTGAAATCCAAAGGAACTGTACTTGGTCAGAAG 120
Query 263 AAACCTGGAGGAGCTCGTAAGGCTCTGAATGATATTACAAACAAGTCTGGGATTCATGCG 322
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCTGGAGGAGCTCGTAAAGCTCTGAATGATATTACAAACAAGTCTGGGATTCATGCG 180
Query 323 AAAGCTGCTGCTTCTTCAAAGAACAAGCAAATTGCTTCTGCTGCTG-T--G-AA-A-GAG 376
||| |||||||||||||| |||||||||||||||||||||| | | || | |||
Sbjct 181 AAA------GCTTCTTCAAAGAATAAGCAAATTGCTTCTGCTGCTGCTGCGAAAGATGAG 234
Query 377 ATTGATATAGCTGGGGAAAGGTTTTTACATGATCACAGCAAATGCATCAAAGAACAGCAA 436
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 ATTGACATAGCTGGGGAAAGGTTCTTACATGATCACAGCAAATGCATCAAAGAACAGCAA 294
Query 437 AATCTTTGGGATGATCACTACTCTGCTGATCTCATGCTACTTCATCATGGTTCCAGCATC 496
| ||| |||||||||||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 295 AGTCTCTGGGATGATCACTACTCTTCTGATCTCATTCTACTTCATCATGAATCCAGCATC 354
Query 497 AAGGAGAAGCATCTCAATTGGGACATTGAAAAGATGGATGCTAAGGACGA-TCTGACTTA 555
|||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||
Sbjct 355 AAGGAGAAGCATCTCAGCTATGACATTGAAAAGATGGATGCTAAGGAC-AGTCTGACTTA 413
Query 556 CGAAGAACCAGAAGAGATGGCATCGCCCAAGTTTTCTGATTGGCTGAAGAACTCGACTCC 615
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 414 CGAAGAACCAGAAGAGATGGCATCACCAAAGTTGTCTGATTGGCTGAAGAACTCGACTCC 473
Query 616 ATGGCGCTCTCCAATCCGTCATGGCTCTATGATGCCTTCCACTCCTCTGGCTTGGCGGTT 675
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATGGCGCTCTCCAATCCGCCATGGCTCTATGATGCCTTCCACTCCTCTGGCTTGGCGGTT 533
Query 676 CGATTCATGCGAATTCACACTTAAAGAAGACTCTGACGACCTCTTCTGA 724
||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 534 CGATTCAAGTGAATTCACACTTAAAGAACACTCTGACGACCTCTTCTGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5