BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14200.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478834 jgi|Araly1|478834|fgenesh2_kg.3__1535__AT3G14200.1 1343 0.0
> Ahg478834 jgi|Araly1|478834|fgenesh2_kg.3__1535__AT3G14200.1
Length=1060
Score = 1343 bits (727), Expect = 0.0
Identities = 937/1034 (91%), Gaps = 31/1034 (3%)
Strand=Plus/Plus
Query 165 TATACACACACCAAACATCCCAAGTTTGTTGGCTCTGTTTTTGAGCGGTGAAAACTCGTC 224
|||||||||||||||||||||||||| |||||||||||||||| | | || ||| |||||
Sbjct 1 TATACACACACCAAACATCCCAAGTTCGTTGGCTCTGTTTTTGGGTGTTG-AAATTCGTC 59
Query 225 GGAAAAACGAGtttttttttaattgggtttctctttttttttGTTGATCTGGAAGGAGAA 284
| ||||||||| ||||| || |||||||||||| |||||||||| || | |||||||
Sbjct 60 GAAAAAACGAG-TTTTTCTT-ATTGGGTTTCTC----TTTTTGTTGACCTAG-AGGAGAA 112
Query 285 AATTAGCGATGGCGTCCAGTAATAGCGAGAAGATCAACGAGAATCTGTACGCTGTTCTGG 344
| |||||||||||||||| |||||||||||| |||||||| ||| ||||| |||||||||
Sbjct 113 AGTTAGCGATGGCGTCCAATAATAGCGAGAAAATCAACGATAATTTGTACACTGTTCTGG 172
Query 345 GTTTGAAGAAGGAATGTTC-TAAGACGGAGCTCCGTTCTGCTTATAAGAAGCTTGCTCTC 403
||||||||||||||||||| | ||||||||||||| ||||||||||||| || |||||
Sbjct 173 GTTTGAAGAAGGAATGTTCGT-CGACGGAGCTCCGTACTGCTTATAAGAAACTCGCTCTT 231
Query 404 AGATGGCATCCAGATCGTTGTTCGTCAATGGAGTTTGTAGAAGAAGCAAAGAAGAAATTT 463
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 232 AGATGGCATCCAGATCGTTGTCCATCAATGGAGTTTGTAGAAGAAGCAAAGAAGAAGTTT 291
Query 464 CAGGCAATCCAAGAAGCCTACTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGAT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CAGGCAATCCAAGAAGCCTACTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGAT 351
Query 524 GTTGGTGCTTATAATACTGATGATGATGATGACCAAAACGGAATGGGAGATTTCTTGAAC 583
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 352 GTTGGAGCTTATAATACTGATGATGATGA---CCAAAACGGAATGGGAGATTTTTTGAAC 408
Query 584 GAAATGGCGACTATGATGAATCAATCCAAGCCTAGTGATAATAACACAGGGGACAGTTTT 643
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 409 GAAATGGCGACTATGATGAATCAATCCAAGCCTAATGAGAATAACACAGGGGACAGTTTT 468
Query 644 GAACAACTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACGCTGCAGCATTCCCATCA 703
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 469 GAACAATTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACGCTGCAGCATTCTCATCA 528
Query 704 TCATCGTCCTGCTCCACTTCAA-ATTTCACTTCATCTCGTAGTTTTGTATTCGATACAAA 762
|||||||| ||||||||||||| ||| |||||| ||| ||||||||||||| ||||||||
Sbjct 529 TCATCGTCTTGCTCCACTTCAACATT-CACTTCCTCTTGTAGTTTTGTATTTGATACAAA 587
Query 763 TTCTCAGCGGTCATCTTCGTTTGCGACAAGTTCGATGGGGATGAATAATGATCCTTTCGG 822
| ||||||||||||| |||||| |||| |||| |||||||| ||||||||||||||| |
Sbjct 588 TGCTCAGCGGTCATCAACGTTTGAGACACGTTCAATGGGGATTAATAATGATCCTTTCCG 647
Query 823 ATATGACCCGAGAGCTCATTCCTTCTCTTTAGGGGTGGACCATCAGCAAGAGTTCAAGAA 882
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ATATGATCCGAGAGCTCATTCCTTCTCTTTAGGGGTGGACCATCAGCAAGAGTTCAAGAA 707
Query 883 AGGGAAAAACAATGGCGGAAGAAGAAACAGGAGAAAGAACAATGTTCCATCGGCTGGTCA 942
||||||||||| ||||||||||||||||||||| |||||||||| | | | | ||
Sbjct 708 AGGGAAAAACACTGGCGGAAGAAGAAACAGGAGGAAGAACAATGCT--A--G-C----CA 758
Query 943 CGAAACGTCGTCGTCAAACAACTATGGAGTCCCCACCTCATAGCCACTTCACACCATAtt 1002
||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 759 TGAAACGTCGTCGTCAAACAACTATGGAGTGCCCACTTCATAGTCACTTCACACCATATT 818
Query 1003 tttttGCTAACTCATCTCCCCACATTTGTCGACTAGTCGCAGACAAGATGAGTGGTTGTT 1062
|||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 819 TTTT-GCTAACTCATGTCC--ACATTTGTCGACTAGTCACAGACAAGATGAGTGGTTGTT 875
Query 1063 GTCTTCTCAATGAGGAATACATCGAAACTCAAAGGGTCGTCGTTTTGTAAAACTACCCAC 1122
|||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 876 GTCTTCTCAACAAGGA-TGCATCGAAACTCAAAGGGTCGTCGTTTTGTAAA-CTACCCAC 933
Query 1123 CTCCTTCTCTAGAATCTTCTTATTTTTATTTTTGTTT-CTCCTGTGCTGTCATTGAATTG 1181
||||| |||| ||| |||||| ||||| ||| | | | || | | |||||||||||||
Sbjct 934 CTCCTCCTCTCGAAGCTTCTTCTTTTTGTTTCTCTCTGCTT-TATTTTGTCATTGAATTG 992
Query 1182 TTGTCTCCTAAAAG 1195
||||||||||||||
Sbjct 993 TTGTCTCCTAAAAG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5