BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14205.1
Length=3155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478835 jgi|Araly1|478835|fgenesh2_kg.3__1536__AT3G14205.1 4215 0.0
Ahg948403 jgi|Araly1|948403|scaffold_800290.1 438 1e-121
> Ahg478835 jgi|Araly1|478835|fgenesh2_kg.3__1536__AT3G14205.1
Length=2804
Score = 4215 bits (2282), Expect = 0.0
Identities = 2681/2863 (94%), Gaps = 70/2863 (2%)
Strand=Plus/Plus
Query 3 AAACCCAGAAATC--ACCaaaaaaaaaaaaaGTACA-TT--TC-CtttttttttG-T-TC 54
||||||||||||| | ||||||||||||| || | || || ||||||||||| | ||
Sbjct 1 AAACCCAGAAATCAAAAAAAAAAAAAAAAAACTAAATTTCCTCTCTTTTTTTTTGTTCTC 60
Query 55 -TTAAATTTTTCTGTGGTTCCGGTCACCGCAGCTCTGTCATCATCTTCTTCTTCTTCATT 113
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTAAA-TTTTCTGTGGTTCCGGTCACCGCAGCTCTGTCATCATCTTCTTCTTCTTCATC 119
Query 114 TACCAATCTGAAATCTACTCAGATTCTTTGTGATTTTCTCCTTAAAATCTCGATCTGTAT 173
|| | || | | | || || || ||||||||||| ||||||||||||||| |
Sbjct 120 TA-C--TC--AGA---A-TC----TC-TT-TGATTTTCTCCGTAAAATCTCGATCTG--T 162
Query 174 CGTACAGTGACTTGTGAAATTAGGATCGTTGTGTCTGTGTTTTCTGGTTACAGTTTGTAA 233
|| | |||| ||||| |||||||||||||||||||||||||| | |||| | |
Sbjct 163 -GT-C-GTGA--AGTGAATTTAGGATCGTTGTGTCTGTGTTTTCT-G-----GTTT-T-A 209
Query 234 AATTTGAATATTTGTGTGTGAAGTCAGATTCAGTTTCGTGAGCTGTTCGGATTTGGTTTG 293
|||||| | |||| ||||| || || || |||||||||||||||||||| ||||
Sbjct 210 AATTTG-A-ATTT-TGTGT---GT--GA---AG--TCGTGAGCTGTTCGGATTTGCTTTG 256
Query 294 GGGGTATATATATAGCGTTGTGTGATCTATTTGGGGGGTTTTGGTTTCCCtttttttCTC 353
|||||||||||||| |||| |||||||||||||||||||||| | ||||| |||| |
Sbjct 257 GGGGTATATATATATCGTTCTGTGATCTATTTGGGGGGTTTT-G-TTCCC---TTTT-T- 309
Query 354 TCTTGTGAATTCGTTTATTGTTGTATCGTCGGCCCGAGTTTATCGGAACTCCGGGTCTGA 413
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 310 TCTTGTGAATTCGTTTATTGTTGTATCGTCGGCCCGAGTTTATCGGAGCTCCGGGTCTGA 369
Query 414 CGTGAGTTTTCCAAATGGCGGCGTCAGAGAGATCGATTGACAAAGAAGTCGACATGGGTT 473
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 370 CGTGAGTTTTTCAAATGGCGGCGTCAGAGAGATCGATTGAAAAAGAAGTCGACATGGGTT 429
Query 474 CTTCCTTTCTTCAAAAATTCAGGCTTTACGAGACCCGCTCGAGCTTCTATATGATTGGAA 533
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 430 CTTCGTTTCTTCAAAAATTCAGGCTTTACGAGACCCGCTCGAGCTTCTATATGATCGGAA 489
Query 534 GAGATAAAAATCGAACGTCTTGGAGGGTCCTGAAGTTAGATAGGACAGAGCCAGCAGAGG 593
|||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 490 GAGATAAAAACCGAACGTCTTGGAGGGTCCTCAAGTTAGATAGGACAGAGCCAACAGAGG 549
Query 594 TCAATATCTACGAAGATTCAACGGCTTACACAGAAGCTGAATGCTTTGAAACTTTGAGAA 653
|||| || |||||||||||||| ||||| ||||||||||| |||||||||||||||| ||
Sbjct 550 TCAACATTTACGAAGATTCAACAGCTTATACAGAAGCTGAGTGCTTTGAAACTTTGACAA 609
Query 654 GGATACACGAGGGAAACAGATCATCTGGTGGTTTGAAATTTGTCACCACCTGCTACGGGA 713
||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 610 GGATACATGAAGGAAACAGATCATCTGGTGGCTTGAAATTTGTCACCACTTGCTACGGGA 669
Query 714 TCATCGGATTCATAAGGTTCTTGGGACCTTATTACATGCTGATAATCACTAAAAGAAAGA 773
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 670 TCATCGGATTTATAAGGTTCTTGGGACCCTATTACATGCTGATAATCACTAAAAGAAAGA 729
Query 774 AGCTTGGTGAAATTTGTGGGCACACTGTTTATGGTGTTGCGAAGAGCAAGATCATCACGA 833
||||||||||| ||||||||||||| |||||||||||||| |||||||| || |||||||
Sbjct 730 AGCTTGGTGAACTTTGTGGGCACACCGTTTATGGTGTTGCTAAGAGCAAAATAATCACGA 789
Query 834 TTCCACATGCCTCTGTGCTATCCAATGTGGCTTATTCTAAGGACGAGAAAAGGTACAAGA 893
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TTCCACATGCCACTGTGCTATCCAATGTGGCTTATTCTAAGGACGAGAAAAGGTACAAGA 849
Query 894 GGCTGCTCTGCACTGTTGATCTCACAAAGGACTTCTTCTTCAGCTATTCCTATCACATCA 953
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 850 GGCTGCTCTGCACTGTTGATCTCACAAAAGACTTCTTCTTCAGCTATTCCTATCATATCA 909
Query 954 TGCATACACTTCAGAGGAATCTGTCTAACAATGTGGAAGGACACACTTACTACGAATCGA 1013
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 910 TGCATACACTTCAGAGAAATCTGTCTAACAATGTGGAAGGACGCACTTACTACGAATCGA 969
Query 1014 TGTTTGTCTGGAACGAATACTTAACTCGAAGGATTCGGAATAACGTGAAGGACTGTATGT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TGTTTGTCTGGAACGAATACTTAACTCGAAGGATTCGGAATAACGTGAAGGACTGTATGT 1029
Query 1074 GGACAGTTGCCTTGGTATATGGATTTTTCAAACAGGTCAAACTATCAGTTTCTGAGAAGA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGACAGTTGCCTTGGTATATGGATTTTTCAAACAGGTCAAACTATCAGTTTCTGAGAAGA 1089
Query 1134 ACTTTAGATTGACTCTAATTTCTCGCAGATCTCGGCATTATGCTGGTACAAGATATCTGA 1193
| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1090 ATTTTAGATTGACTCTAATTGCTCGCCGATCTCGGCATTATGCTGGTACAAGATATCTGA 1149
Query 1194 AACGTGGTGTAAACGAGAAAGGCAGGGTAGCTAATGATGTTGAGACAGAGCAGATTGTTT 1253
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1150 AACGTGGTGTAAACGAGAAAGGCAGGGTAGCTAATGATGTCGAGACAGAGCAGATTGTTT 1209
Query 1254 TCGAGGAAGCTCAAGATGGTAATCCCGGCCGAATAAGTTCTGTAGTTCAGAATCGGGGTT 1313
| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1210 TTGAGGAAGCTCAAGACGGTAATCCCGTCCGAATAAGTTCTGTAGTTCAGAATCGGGGGT 1269
Query 1314 CAATTCCTTTGTTCTGGTCTCAGGAGACCTCACGCTTGAATATCAAACCTGATATAATAT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CAATTCCTTTGTTCTGGTCTCAGGAGACCTCACGCTTGAATATCAAACCTGATATAATAT 1329
Query 1374 TGTCACCGAAAGACCCCAACTTTGAGGCAACCAGACTGCATTTTGAAAATCTTGGAAGGA 1433
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGTCAGCGAAAGACCCCAACTTTGAGGCAACCAGACTGCATTTTGAAAATCTTGGAAGGA 1389
Query 1434 GATATGGGAATCCAATCATCATACTGAACTTGATAAAGACGCGTGAAAAGAGGCCTCGGG 1493
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1390 GATATGGGAATCCAATCATCATATTGAACTTGATAAAGACGCGTGAAAAGAGGCCTCGGG 1449
Query 1494 AGACTATTCTGCGTGCAGAGTTTGCAAATGCAATTAGATTTATTAATAAAGGGTTAAGCA 1553
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 AGACTATTCTGCGCGCAGAGTTTGCAAATGCAATTAGATTTATTAATAAAGGGTTAAGCA 1509
Query 1554 AAGAGGATCGTCTAAGGCCTCTTCACTGGGACTTGCATAAACACTCCAGaaaaaaaGGCA 1613
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 AGGAGGATCGTCTAAGGCCTCTTCACTGGGACTTGCATAAACACTCCAGAAAAAAAGGCA 1569
Query 1614 CAAACGTGTTGGCAATTCTCGGCAGGTTGGCTACTTATGCTCTGAACTTGACCAGCATCT 1673
||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct 1570 CAAACGTGTTGGCAATTCTTGGCAGGTTAGCTACTTATGCTCTGAACTTGACCGGCATCT 1629
Query 1674 TCTACTGTCAATTAACTCCAGATCTTAGAGGAGAAGGATTTCAGAACCAGAATCCATCCA 1733
|||||||||| |||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 1630 TCTACTGTCAGCTAACTCCAGATCAAAGAGGAGATGGGTTTCAGAATCAGAATCCATCCA 1689
Query 1734 CCTTGGAGAACGACGATGGTGAATGTTCTACTTATGATCCACCCAGTAAAGATGAAACTG 1793
||||||||||| || ||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 1690 CCTTGGAGAACAACAATGGTGAATGTTCTACTTACGATCTACTCAGTAAAGATGAAACTG 1749
Query 1794 CACCAAATTTGGTGGTGGAAAACGGTAATGATAGTAAGGATGCTAAGGAAGATCAGCAAA 1853
|||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1750 CACCAAATTTGGCGGTCGAAATTGGTGATGATAGTAAGGATGCTAAGGAAGATCAGCAAA 1809
Query 1854 AGGAAGTTACCATGCTGCAGAAAGGAGTCCTGAGGACCAATTGCATAGACTGTTTAGATC 1913
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 AGGAAGCTACCATGCTGCAGAAAGGAGTCCTGAGGACCAATTGCATAGACTGTTTAGATC 1869
Query 1914 GCACCAATGTTGCTCAATATGCCTATGGGTTGGTAGCATTTGGGCGTCAACTCCATGCTT 1973
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1870 GCACCAATGTTGCTCAATATGCATATGGGTTGGTAGCATTTGGGCGTCAACTCCATTCTT 1929
Query 1974 TGGGATTGACAGAGTCTACTAATATTGATCTAGACAATCCCCTCGCTGAAGATTTGATGG 2033
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1930 TGGGATTGACAGAGTCTACTACTATTGATCTAGATAATCCCCTCGCTGAAGATTTGATGG 1989
Query 2034 GAATTTATGAGACGATGGGAGATACACTTGCACTTCAGTATGGAGGATCCGCGGCACACA 2093
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 GAATCTATGAGACGATGGGAGATACACTTGCACTTCAGTATGGAGGATCCGCGGCACACA 2049
Query 2094 ACAAGATATTTTGTGAAAGGCGTGGTCAATGGAGAGCAGCGACTCAATCACAGGAATTCT 2153
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2050 ACAAGATATTTTGTGAAAGGCGTGGTCAATGGAGAGCAGCAACTCAGTCACAAGAATTCT 2109
Query 2154 TCAGAACTTTACAACGTTACTACAGTAACGCCTATATGGATGCCGAAAAGCAAGATGCAA 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 TCAGAACTTTACAACGTTACTACAGTAACGCCTATATGGATGCCGAAAAGCAAGATGCAA 2169
Query 2214 TTAACGTGTTCTTGGGATACTTTCAGCCACAATCAGATAAGCCAGCGCTATGGGAATTGG 2273
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2170 TTAACGTGTTCTTGGGATACTTTCAGCCACAACCAGATAAGCCAGCACTATGGGAATTGG 2229
Query 2274 GTTCTGATCAGCATTACAACGCAGCAAGATTTCTTGCCAATTCTGTACCAGAGACTTCAA 2333
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||
Sbjct 2230 GTTCTGATCAGCATTACAATGCAGCAAGATTTCTTGCCAATTCTGTACCGGAGAATCCAA 2289
Query 2334 GATCGACGATGAAACGATCTCTATCAGAAAGTAGCATCATTAGCGAGAGCAGTCCAGCCG 2393
| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2290 GGTCTACGATGAAACGATCTCTATCAGAAAGTAGCATCATTAGCGAGAGCAGTACAGCCG 2349
Query 2394 CATTGGGACCAGTAGGTAGACATGGTTTAGCTGAAAAAGATGAAGAAGTTAAAGGTCTTT 2453
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2350 CGTTGGGACCAGTAGGTAGACATGGTGTAGCTGAAAAAGATGAAGAAGTTAAAGGTCTTT 2409
Query 2454 CAGATTCAGCACCGGAGATCTCAACGTCTGAAACTGCCAAGATTGCTGCTAGTTTGAGTG 2513
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2410 CAGATTCAGCACCTGAGATTTCGACGTCTGAAACTGCCAAGATTGCTGCTAGTTTGAGTG 2469
Query 2514 CTCCACCACCGATATTAGAGGAATTAGGTTTAGATGATATTCTTGAAAACGATTGCTTCT 2573
|||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 2470 CTCCACCACCGACATTAGAGGAATTAGGATTAGACGATATTCTTGAAAACGATTGTTTCT 2529
Query 2574 GCTGTGATGGGAATGGTGAGCAATGTACATGTGCAGCTTTTGATATGGATTGGGTATCTT 2633
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2530 GCTGTGATGGGAATGGGGAGCAATGTACATGTGCAGCTTTTGATTTGGATTGGGTATCTT 2589
Query 2634 CTTCAGGAAACTCTTGTGAAGATGAGAGTTGCGGAAGAGCCACAGTGGTTAGATCCTTTG 2693
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2590 CTTCAGGAAACTCTTGTGAAGATGAGAGTTACGGAAGATCCACAGTGGTTAGATCCTTTG 2649
Query 2694 AAACCATCCCTGAAAGTAGAAAAATAGAGTCAGAAATTTGTGTTGTTGAA-ACAGTTGGT 2752
|||||||||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 2650 AAACCATCCCTGAAAGTAGAAAAATAGAGTCAGAAATTTGTGTTGTTGAAGA-AGCTGAT 2708
Query 2753 TCCA-ACAGTAGAAAGGGAAATAAAGAAGAAGAAGAAGCCATTTCCGGGATTCCTGAAGG 2811
|| | ||| |||||||||| || |||||||||| | ||||||||||||||||||||
Sbjct 2709 TC-AGACAATAGAAAGGGACAT---GAAGAAGAAGT--C-ATTTCCGGGATTCCTGAAGG 2761
Query 2812 TTATGTGAGGTGGGTGATGGATGAAGACGGTCATTTCTGGTGA 2854
||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2762 ATATGTGAAGTGGGTGATGGATGAAGACGGTCATTTCTGGTGA 2804
> Ahg948403 jgi|Araly1|948403|scaffold_800290.1
Length=481
Score = 438 bits (237), Expect = 1e-121
Identities = 308/341 (90%), Gaps = 10/341 (3%)
Strand=Plus/Plus
Query 770 AAG-AAGCTTGGTGAAATTTGTGGGCACACTGTTTATGGTGTTGCGAAGAGCAAGATCAT 828
||| |||||||||||| ||||||||||||| | |||||||||||| ||||||||||| ||
Sbjct 68 AAGTAAGCTTGGTGAACTTTGTGGGCACACAGGTTATGGTGTTGCAAAGAGCAAGATAAT 127
Query 829 CACGATTCCACATGCCTCTGTGCTATCCAATGTGGCTTATTCTAAGGACGAGAAAAGGTA 888
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 128 CACGATTCTGCATGCCTCTGTGCTATCCAATATGGCTTATTCTAAGGACGAGAAAAGATA 187
Query 889 CAAGAGGCTGCTCTGCACTGTTGATCTCACAAAGGACT-TCTTCTTCAGCTATTCCTAT- 946
|||||||||||| ||||||||||||||||| ||||| | | |||||||||||||||| |
Sbjct 188 CAAGAGGCTGCTATGCACTGTTGATCTCAC-AAGGAATATATTCTTCAGCTATTCCT-TC 245
Query 947 CACATCATGCATACACTTCAGAGGAATCTGTCTAACAATGTGGAAGGACACACTTACTAC 1006
|||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||
Sbjct 246 CACATCATGCATACACTTCAAAGGAATATGTCTAACAATAAGGAAGGACACACTAACTAT 305
Query 1007 GAATCGATGTTTGTCTGGAACGAATACTTAACTCGAAGGATTCGGAATAACGTGAAGGAC 1066
|||||||||||||| |||||||||||||||||||||||||||| ||||| || |||
Sbjct 306 GAATCGATGTTTGTTTGGAACGAATACTTAACTCGAAGGATTCACAATAA----AA-GAC 360
Query 1067 TGTATGTGGACAGTTGCCTTGGTATATGGATTTTTCAAACA 1107
| ||||||| |||||||||||||||||||||||||||||||
Sbjct 361 TATATGTGGTCAGTTGCCTTGGTATATGGATTTTTCAAACA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119184376605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5