BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14220.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929201 jgi|Araly1|929201|scaffold_301658.1 1720 0.0
> Ahg929201 jgi|Araly1|929201|scaffold_301658.1
Length=1132
Score = 1720 bits (931), Expect = 0.0
Identities = 1068/1135 (94%), Gaps = 5/1135 (0%)
Strand=Plus/Plus
Query 126 GCTAGAAAAACCTTTCCAAAAATGGCAAAGAACCGTAACTTAGTCTTCTTCTTAGGGGTA 185
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GCTA-AAAAACCTTTCTAGAAATGGCAAAGAACCGTAACTTAGTCTTCTTCTTAGGGCTA 59
Query 186 TTAGCGTCTTTTACACTCTCCAGTTTCCCGGT-AACTGTTTCCGGCGAGCCCCCTATCTT 244
|||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| ||||
Sbjct 60 TTAGCGTCTTTTACACTCGCCAGTTTCCCGGTGAAC-GTTTCCGGCGAACCCCCTCTCTT 118
Query 245 ATTCACTTTCGGCGACTCTTCCTACGATGTGGGCAACACGAAGTTCTTCTCGTCGGAGTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTCACTTTCGGCGACTCTTCCTACGATGTGGGCAACACGAAGTTCTTCTCGTCGGAGTT 178
Query 305 CGATCCAGCCACCACGTGGCCTTACGGCGATTCCATCGATGATCCCTCCGGTCGTTGGTC 364
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 179 CGATCCGGCCACCACGTGGCCTTACGGCGACTCCATCGATGATCCAACCGGTCGTTGGTC 238
Query 365 TGACGGCCACATTGTCCCAGATTTCGTCGGTCGATTGATTGGTCATCGTGAACCGATTCC 424
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 239 TGACGGCCACATTGTCCCAGATTTCGTCGGTCGATTGATTGGTCAACGTGAACCAATTCC 298
Query 425 TCCGGTACTTGATCCAAAAGCTGATCTTTCTCGTGGAGCAAGCTTTGCCATTGCTGGAGC 484
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCCGGTGCTTGACCCAAAAGCCGATCTTTCTCGTGGAGCAAGCTTTGCCATTGCTGGAGC 358
Query 485 AGTTGTTCTTGGATCTCAATCTACTACTGCATCCATGAATTTTGGACAACAGATATCGAA 544
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 359 AGTTGTTCTTGGATCTCAATCTGCGACTGTATCCATGAATTTTGGACAACAGATATCGAA 418
Query 545 GTTTTTAGAGTTACATAAGCA-ATGGACTGATAAAGAACGAGCAGAAGCTATATACATGG 603
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTTATAGAGTTACATAAG-AGATGGACTGATAAAGAACGAGCAGAAGCTATATACATGG 477
Query 604 TAAACATAGGAGCTGAGGACTACTTGAATTTCGCAAAGGCTCATCCAAATGCCAATACTG 663
| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTAACATCGGAGCTGATGATTACTTGAATTTCGCAAAGGCTCATCCAAATGCCAATACTG 537
Query 664 TGGAGCAGCTAACTCAAGTTGCCCACGTTCTCCAAAGGATACCAAGAGAGCTCACGAGTT 723
|||||||| | |||||||||||| | ||||||||||||||| |||||||||||| ||||
Sbjct 538 TGGAGCAGGTTACTCAAGTTGCCTATGTTCTCCAAAGGATATCAAGAGAGCTCATGAGTA 597
Query 724 TATACAGGGCAGGTGGAGCGAGGAAGTTTGCGGTACAGAATTTGGGACCGCTTGGTTGTT 783
|||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
Sbjct 598 TATACAGGGCAGGTGGGGCTAGGAAGTTTGCGGTACAGAATTTGGGGCCGCTTGGTTGCT 657
Query 784 TACCGATAGTGAGACAAGAGTTTAAGACAGGTGAGAATTGTATGGAGATGGTTAACTTCA 843
||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 658 TACCGATAGCGAGACAAGAGTTTAAGACAGGTGAAAAGTGTATGGAGATGGTTAACTTCA 717
Query 844 TGGTGAAAACACACAATGAAAGGCTTAGTCGTTTGCTCGTTGCGATAACCGTACCGTTAC 903
||| ||||||||||||||||||||||||| || ||||| || |||| || ||||| ||||
Sbjct 718 TGGCGAAAACACACAATGAAAGGCTTAGTGGTGTGCTCTTTTCGATGACTGTACCATTAC 777
Query 904 TGTACCGTGGCTTCCGGTACAGCCTCTTTGATTTCAATGGTGAAATTCTCCGGAGGATCA 963
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 TGTACCGTGGCTTCCGGTACAGCCTCTTTGATTTCAACGGTGAAATTCTCCGGAGGATCA 837
Query 964 ATGAACCATCACTCCATGGATATACTGATACAACGACTTCTTGCTGCGGAACTGGATCGA 1023
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 ATGAACCATCACTCCACGGATATACTGATACAACGACTTCTTGCTGTGGAACTGGATCGA 897
Query 1024 GAAATGCATACGGGTGCGGTTATAGTAACGTGCATGCTAAGCTCTGCAGCTACCAGAAAT 1083
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 898 GAAATGCATACGGGTGCGGTTATAGCAACGTGCATGCGAAGCTCTGCAGCTACCAGAAAT 957
Query 1084 CATTTTTGTTCTTCGACGGGCGTCACAACACCGAGAAAACCGATGAAGAAGTTGCTAATC 1143
||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||
Sbjct 958 CATTTTTGTTCTTCGACGGGCGTCACACCACCGAGAAAACAGATGAAGAAATCGCTAATC 1017
Query 1144 TGTTTTATTCCGGAGACAAACATGTCGTCTCTCCGATGAATATAAAGGATCTCGTAGGTA 1203
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 TGTTTTATTCCGGAGACAGACATGTCGTCTCTCCGGTGAATATAAAGGATCTCGTAGGTA 1077
Query 1204 AAGCAGCGACCGATCTTCTTGCGCAAGAAATCTAGAAATCCCAATCGTGTTCTGT 1258
|| | | || |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1078 AATCGGTGAACGATCTTCTTGCGCAAGAAATCTAGAAACCCCAATCCTGTTCTGT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5