BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14225.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478837 jgi|Araly1|478837|fgenesh2_kg.3__1538__AT3G14225.1 1751 0.0
Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 599 2e-170
Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 424 1e-117
> Ahg478837 jgi|Araly1|478837|fgenesh2_kg.3__1538__AT3G14225.1
Length=1134
Score = 1751 bits (948), Expect = 0.0
Identities = 1074/1136 (95%), Gaps = 4/1136 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGTCCTAGATTTAATTCCATCATCATCATCTTATTCATCTGCACTATAAGCTTA 60
||||| ||| ||||||||||||| |||||||||||| ||||||| ||||| ||||| |||
Sbjct 1 ATGGCGAGTTCTAGATTTAATTCGATCATCATCATCATATTCATTTGCACAATAAGTTTA 60
Query 61 TCGATCGTCTCGATTTCTTGCAAAGAAGATCTTAAAACGAACCAAGCCGCCTTGTTTGCG 120
|| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 61 TCAATCGGCTCGATTTCTTGCAAAGAAGATCTTATAACGAACCAAGCCGCCTTGTTCGTT 120
Query 121 TTTGGAGATTCTCTGTTTGAAGCCGGAAACAATAATTACTTCGACTCTATCTCAAGTTTC 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TTTGGAGATTCGCTGTTTGAAGCCGGAAACAATAATTACTTCGACTCTGTCTCAAGTTTC 180
Query 181 CGATCAAATTTCTGGCCGTATGGTAAAACAACGTTCAAGTTTCCAACGGGACGGGTCTCT 240
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 CGATCGAATTTCTGGCCATATGGCAAAACAACGTTCAAGTTTCCAACGGGACGGGTTTCG 240
Query 241 GATGGACGAATAATGATAGATTTTATTGCTGAATACGCATGGTTACCGTTGATCCCGCCA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GATGGACGAATAATGATAGATTTTATTGCTGATTACGCATGGTTACCGTTGATCCCGCCA 300
Query 301 AATCTACAACCTGGTTACAGTAACAGTCAACTAACCTATGGACTTAATTTCGCTACTACA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 AATCTACAACCTGGTTACAGTAACAGTCAATTAACCTATGGACTTAATTTCGCTACTACA 360
Query 361 GCCGCCGGAGTTTTCGCCGGAACTTTTCCCGGATCGGTAACTAATCTCTCGAAAGATTTG 420
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 361 GCCGCCGGAGTTTTCGCCGGAACGTTTCCGGGATCGGTAACTAATCTTTCGAAAGACTTG 420
Query 421 GGAACACAGTTAAACAACTTCAAGAACGTGGAGAAAACGTTGAGGTCTAATTTAGGAGAT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GGAACACAGTTAAACAACTTCAAGAACGTGGAGAAAACGTTGAGATCTAATTTAGGAGAT 480
Query 481 GCAGAGGCGAGGAGAGTAATCTCGAAAGCTGTTTATCTTTTTCACATAGGAGCAAATGAC 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GCAGAGGCGAGAAGAGTAATCTCGAAAGCTGTTTATCTTTTTCACATCGGAGCAAATGAC 540
Query 541 TATCAATACCCATTCTTTGCAAATACCTCAACTTTTAGTAACACTACCAAAGAAAGATTC 600
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCAATACCCATTCTTTGCCAATACCTCAACTTTTAGTAACACTACCAAAGAAAGATTG 600
Query 601 ATCGATTTCGTCA-TCGGTAACACAACGACTGTAATCGAGGAGTTGTATAAATTAGGAGC 659
|||| ||||||| || |||||||||| || || |||||||| |||||||||||||||||
Sbjct 601 GTCGAGTTCGTCATTC-GTAACACAACCACCGTCATCGAGGAATTGTATAAATTAGGAGC 659
Query 660 AAGGAAATTCGGATTCTTGAGCTTGGGTCCATTTGGTTGTACACCAAGCGCATTGATAAT 719
||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 660 AAGGAAATTTGGATTCTTGAGCTTGGGTCCATTTGGCTGTACACCAAGCGCATCGATAAT 719
Query 720 AAACAGTACAAAGATAGGATCTTGTTTCGAGCCAGTCA-CAGAGCTGATCAATCTCCATA 778
| || | ||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 720 AGACCGGGCAAAGATAGGATCTTGTTTCGAGCCGGT-AGCAGAGCTGATCAATCTCCATA 778
Query 779 ACCAAGAATTTCCAAAAGTCTTGAGGCGTCTAGAGCGCCGGTTATCCGGATTCAAATACG 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCAAGAATTCCCAAAAGTCTTGAGGCGTCTAGAGCGCCGGTTATCCGGATTCAAATACG 838
Query 839 CTCTTCATGACTTTCACACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTT 898
||||||| ||||||||||||||| |||||||||| |||||||| |||||||| |||||||
Sbjct 839 CTCTTCACGACTTTCACACTTCTTTATCCCAAAGGATCAACAACCCTTCTCGATACGGTT 898
Query 899 TTAAGGAAGGGGAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTG 958
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCAAGGAAGGGAAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTG 958
Query 959 GATTCCGAAATGGACCATCGCAAGGTTACAAGCTATGCGAAAACGCTGATGATTACGTCT 1018
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 GATTCCGAAATGGACCATCGCAAGGTTACGAGCTATGCGAAAACGCTGATGATTACGTCT 1018
Query 1019 TCTTTGATCCTTCTCATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078
|||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 TCTTTGATCCCTCTCATTTGTCGGAAAAGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078
Query 1079 GCGGACCACCTAATGTCACTGCACCTTACAATCTTAAAACATTGTTCAGACTCTAG 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCGGACCGCCTAATGTCACTGCACCTTACAATCTTAAAACATTGTTCAGACTCTAG 1134
> Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125
Length=1131
Score = 599 bits (324), Expect = 2e-170
Identities = 862/1115 (77%), Gaps = 64/1115 (6%)
Strand=Plus/Plus
Query 31 ATCATCTTATTCATCTGCACTA-TAAGCTTATCGATCGTCTCGAT-TTCTTGC----A-A 83
|||||||| ||| ||| || | ||| ||||||||||| ||| || | ||| | |
Sbjct 25 ATCATCTTCTTCGTCTATAC-AGTAATCTTATCGATCGGCTCAATCAAC-TGCAAAAACA 82
Query 84 AGAA-GATCTTAAAACGAACCAAGCCGCCTTGTTTGCGTTTGGAGATTCTCTGTTTGAAG 142
|||| ||||| ||| |||||||| || ||||| | ||| |||||||||||||| || |
Sbjct 83 AGAACAATCTTGTAACAAACCAAGCTGCGTTGTTCGTGTTCGGAGATTCTCTGTTCGATG 142
Query 143 CCGGAAACAATAATTACTTCGACT-CTATCTCAAGTTTCCGATCAAATTTCTGGCCGTAT 201
|||||||||| || ||| |||| | | ||||||||||||| || ||| | ||||||||
Sbjct 143 CCGGAAACAACAACTACATCGA-TACCGTCTCAAGTTTCCGGTCTAATATATGGCCGTAC 201
Query 202 GGTAAAACAACGTTC-AAGTTTCCAACGGGACGGGTCTCTGATGGACGAAT-AATGATAG 259
||| ||| || ||| ||| |||| || ||| | |||| || |||||| | | | | |
Sbjct 202 GGTCGAACCACTTTCAAAG-TTCCCACCGGAAGACTCTCAGACGGACGATTGATTCCT-G 259
Query 260 ATTTTATTGCTGA-ATACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCTGGTTAC 318
|||| || || || | ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 260 ATTTCATCGCGGAGA-ACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCAAGCAAC 318
Query 319 AGTAACAGTCAACTAACCTATGGACTTAA-TTTCGCTACTACAGCCGCCGGAGTTTTCGC 377
|||||| |||| | ||||||||| | || ||| ||| || | | |||||||| ||| |
Sbjct 319 GGTAACAATCAATTTACCTATGGAGT-AAGTTTTGCTTCTGCTGGCGCCGGAGCTTTAGT 377
Query 378 CGGAA-CTTTTCCCGGA-TCGGTAACTAATCTCTCGAAAGATTTGGGAACACAGTTAAAC 435
|| || |||| || ||| | || | ||| ||| ||||||||||||| |||||
Sbjct 378 CGAAAGCTTT-CCTGGAAT-GG---C-AAT------AAA--TTTGGGAACACAGCTAAAC 423
Query 436 AACTTCAAGAACGTGGAGAAA-ACGTTGAGGTCT-AATTTAGGAGATGCAGAGGCGAGGA 493
||||||||| | || || ||| | |||||| ||| |||| |||||||||||| | | |
Sbjct 424 AACTTCAAGGATGTTGA-AAAGAGGTTGAGATCTGAATT-AGGAGATGCAGATACCAAAA 481
Query 494 GAGTAATCTCGAA-AGCTGTTTATCTTTTTCACATAGGAGCAAATGACTATCAATACCCA 552
| || |||| || |||||||||||| ||||| || |||| || |||||| || ||
Sbjct 482 GGGTTTTCTC-AAGAGCTGTTTATCTGTTTCATATCGGAGTTAACGACTATTTTTATCCT 540
Query 553 TTCTTTGCAAA-TACCTCAACTTTT-AGTAACACTACCAAAGA-AAGATTCATCGATTTC 609
|||| |||||| | |||||||||| | | || | ||||||| || |||| |||||||
Sbjct 541 TTCTCTGCAAACT-CCTCAACTTTCCAATC-CAATTCCAAAGAGAA-ATTCGTCGATTTT 597
Query 610 GTCATCGGTAACACAACGA-CTGTAATCGAGG-AGTTGTATAAATTAGGAGCAAGGAAAT 667
|| ||||||||||| || | | || ||| || | || |||||| | |||| ||||||||
Sbjct 598 GTTATCGGTAACACGAC-ATCCGTGATCAAGACACTT-TATAAAATGGGAGGAAGGAAAT 655
Query 668 TCGGATTCTTGAGCTTGGGTCCATTTGGTTGTACACCAAGCGCATTGATAATAAACAGTA 727
| ||||| |||| | |||| || | | ||| ||||||| ||||||||| | || | |
Sbjct 656 TTGGATTTTTGAACGTGGGACCGTACGAATGTGCACCAAGTTCATTGATAAGAGACCGAA 715
Query 728 CAAAGATAGGATCTTGTTTCGAGCCAGTCACAGAGCTGATCA-ATCTCCATAACCAAGAA 786
|||||||||||||||||||| | || ||||| ||||| || | || | || ||| |||||
Sbjct 716 CAAAGATAGGATCTTGTTTCAAACCTGTCACTGAGCTTAT-AGATATGCACAAC-AAGAA 773
Query 787 -TTTCCAAAAGTCTTGAGGCGTCTAGAGCGCCGG-TTATCCGGATTCAAATACGCTCTTC 844
||||| | ||||| ||||| ||| | || | ||||||||||| | |||||||||||
Sbjct 774 GTTTCCGGATGTCTTAAGGCGGCTACAACGT-GAATTATCCGGATTTAGATACGCTCTTC 832
Query 845 ATGACTTTCACACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTTTTAAGG 904
| |||| |||| |||| || ||| |||||||||| |||||||| || || || || |
Sbjct 833 ACGACTATCACTCTTCACTTTCCGAAAGAATCAATAATCCTTCAAAATATGGGTTCAAAG 892
Query 905 AAGGGGAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTGGATTCC 964
||||| ||| ||||||||| || || || || |||| ||||||||||| |||||| ||
Sbjct 893 AAGGGAAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACC 952
Query 965 GAA-ATGGACCATCGCAAGGTTACAAGCTATGCGAAAACGCTGAT-GATTACGTCTTCTT 1022
||| | || ||||||||||||||| ||||||||||||||| | | ||||| | |||||
Sbjct 953 GAATAGGG-CCATCGCAAGGTTACGAGCTATGCGAAAACGTT-ACCGATTATTTGTTCTT 1010
Query 1023 TGAT-CCTTCTCATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGAGCG 1081
|||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||| |||
Sbjct 1011 TGATTCCT-CTCATTTGACGGAAAAGGCTCATCGACAGATCGCAGAGCTGATTTGGGGCG 1069
Query 1082 GACCACCTAATGTCACTGCACCTTACAATCTTAAA 1116
|| |||| |||||||||| |||||| ||||| |||
Sbjct 1070 GATCACCCAATGTCACTGGACCTTATAATCTCAAA 1104
> Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1
Length=1107
Score = 424 bits (229), Expect = 1e-117
Identities = 786/1045 (75%), Gaps = 78/1045 (7%)
Strand=Plus/Plus
Query 96 AACGAACCAAGCCGCCTTGTTTGCGTTTGGAGATTCTCTGTTTGAAGCCGGAAACAATAA 155
||| |||||| |||| ||||| | ||||||||||||| |||| || || |||||||| ||
Sbjct 96 AACAAACCAATCCGCTTTGTTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAACAACAA 155
Query 156 TTACTTCGACT-CTATCTCAAGTTTCCGATCAAATTTCTGGCCGTATGGTAAAACAACGT 214
||| |||| | || |||| ||| |||| || |||| ||||||||||||| ||||||| |
Sbjct 156 CTACATCGA-TACTTTCTCTAGTGTCCGGTCTAATTACTGGCCGTATGGTCAAACAACAT 214
Query 215 TCAAGTTTCCAACGGGACGGGTCTCTGATGGACGAAT-AATGATAGATTTTATTGCTGAA 273
|||| | || || ||| | ||||| || ||||| | | | | ||||| || || ||
Sbjct 215 TCAAATCCCCTACTGGAAGAGTCTCCGACGGACGTTTGATTCCT-GATTTCATCGCGGAG 273
Query 274 TACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCTGGT-TACAGTAACAGTCAACT 332
|||||||||||||| |||||||| |||||| ||||||| | || ||||||| ||| |
Sbjct 274 TACGCATGGTTACCATTGATCCCACCAAATTTACAACC-ACTCCACGGTAACAGCCAATT 332
Query 333 AACCTATGGACTTAATTTCGCTACTA-CAGCCGCCGGAGTTTTCGCCGGAA-CTTTTCCC 390
|||||||| | ||||| ||| | | | |||||||| ||| | ||||| ||||| ||
Sbjct 333 TACCTATGGGGTAAATTTTGCTTC-AGGTGGCGCCGGAGCTTTGGTCGGAACCTTTT-CC 390
Query 391 GGATCGGTAACTAATCTCTCGAAAGATTTGGGAACACAGTTAAACAACTTCAAGAACGTG 450
|||| || | | | || ||||| ||||||| ||||||||||||||||| ||
Sbjct 391 GGATTGG----TGA----T---AA-ATTTGAGAACACAATTAAACAACTTCAAGAAGGTT 438
Query 451 GAGAAAACGTTGAGGTCTAATTTAGGAGATGCAGAGGCGAGGAGAGTAATCTCGAA-AGC 509
|| |||| |||||||||||| |||||||||| |||| || ||| || ||||| || |||
Sbjct 439 GAAAAAATGTTGAGGTCTAAGTTAGGAGATGTTGAGGGGAAGAGGGTTATCTC-AAGAGC 497
Query 510 TGTTTATCTT-TTTCACATAGGAGC-AAATGACTATCAATACCCATTCTTTGCAAA-TAC 566
||||||| || ||||| || ||| | || || |||||||| || ||| | |||| | |
Sbjct 498 TGTTTAT-TTGTTTCATATTGGA-CTCAACGATTATCAATATCCGTTCACTACAAACT-C 554
Query 567 CTCAACTTTT-AGTAACACTACCAAAGA-AAGATTCATCGATT-TCGTCATCGGTAACAC 623
|| | |||| | | || | |||| || || || | |||||| | || | |||
Sbjct 555 TTCCATTTTTCAAT-CCATTTCCAACGAGAA-ATACGTCGATTAT-GTTGTTGGT----- 606
Query 624 AACGACTGTAATCGAGGA-GTTGTATAAATTAGGAGCAAGGAAATTCGGATTCTTGAGCT 682
||| | || | | | || ||| | | | ||| | |||||| || |||||||||| |
Sbjct 607 AAC-A-TG--A-C-A-GACGTT-T-T-CA--AGG-G-AAGGAAGTTTGGATTCTTGAACA 652
Query 683 TGGGTCCATTTGGTTGTACACCAAG-CGCATTGATAATA-AACAGTACAAAGATAGGATC 740
|| |||| | |||| |||| || | ||||| | ||| | || ||||||||||||||
Sbjct 653 CAGGACCATACGATTGTGCACC-AGCCTCATTGGTTATAGACCA-AACAAAGATAGGATC 710
Query 741 TTG-TTTCGAGCCAGTCAC-AGAGCTGATCAATCTCCATAACCAAGAATTTCC--AAAAG 796
||| |||| |||| ||||| | ||||||||||||| || || |||||| ||| || |
Sbjct 711 TTGTTTTC-AGCCGGTCACTA-AGCTGATCAATCTGCACAA-CAAGAAGCTCCTGAATGG 767
Query 797 TCTTGAGGCGTCTAGAGCGCCG-GTTATCCGGATTCAAATACGCTCTTCATGACTTTCAC 855
| |||||||| ||| | | | ||||||||||||||||| | || || |||| ||||
Sbjct 768 T-TTGAGGCGGCTAAATC-ATGAACTATCCGGATTCAAATACTCCCTCCACGACTATCAC 825
Query 856 ACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTTTTAAGGAAGGGG-AGAT 914
||||| || || ||||||| || |||||||| ||||| || |||| ||||| |||
Sbjct 826 ACTTCCCTCTCGGAAAGAATGAATAATCCTTCAAAATACGGGTTCAAGG-AGGGGAAGAA 884
Query 915 GGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTGGATTCCGAAAT-GGAC 973
||||||||| || || || || ||||| ||||||||||| |||||| ||| ||| ||||
Sbjct 885 GGCATGTTGTGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCG-AATGGGAC 943
Query 974 CATCGCAAGGTTACAAGCTATGCGAAAACGCTGA-TGATTACGTCTTCTTTGATCCTTCT 1032
|| ||| |||| || |||| ||||||| | | || || | |||| |||||||| |
Sbjct 944 TGTCACAAAATTACGAGTTATGTGAAAACG-TTACAGACTATTTGTTCTATGATCCTTTT 1002
Query 1033 CATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGAGCGGACC-ACCTAA 1091
||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 1003 CATTTGACGGAAAAAGCTAATCAGCAGATCGCTGAGCTGATTTGGAGCGGACCGACC-AA 1061
Query 1092 TGTCACTGCACCTTACAATCTTAAA 1116
|||||| ||| || ||||| |||
Sbjct 1062 CATCACTGGACCCTATAATCTCAAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5