BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14225.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg478837 jgi|Araly1|478837|fgenesh2_kg.3__1538__AT3G14225.1 1751 0.0 Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 599 2e-170 Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 424 1e-117 > Ahg478837 jgi|Araly1|478837|fgenesh2_kg.3__1538__AT3G14225.1 Length=1134 Score = 1751 bits (948), Expect = 0.0 Identities = 1074/1136 (95%), Gaps = 4/1136 (0%) Strand=Plus/Plus Query 1 ATGGCAAGTCCTAGATTTAATTCCATCATCATCATCTTATTCATCTGCACTATAAGCTTA 60 ||||| ||| ||||||||||||| |||||||||||| ||||||| ||||| ||||| ||| Sbjct 1 ATGGCGAGTTCTAGATTTAATTCGATCATCATCATCATATTCATTTGCACAATAAGTTTA 60 Query 61 TCGATCGTCTCGATTTCTTGCAAAGAAGATCTTAAAACGAACCAAGCCGCCTTGTTTGCG 120 || |||| |||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 61 TCAATCGGCTCGATTTCTTGCAAAGAAGATCTTATAACGAACCAAGCCGCCTTGTTCGTT 120 Query 121 TTTGGAGATTCTCTGTTTGAAGCCGGAAACAATAATTACTTCGACTCTATCTCAAGTTTC 180 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 TTTGGAGATTCGCTGTTTGAAGCCGGAAACAATAATTACTTCGACTCTGTCTCAAGTTTC 180 Query 181 CGATCAAATTTCTGGCCGTATGGTAAAACAACGTTCAAGTTTCCAACGGGACGGGTCTCT 240 ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct 181 CGATCGAATTTCTGGCCATATGGCAAAACAACGTTCAAGTTTCCAACGGGACGGGTTTCG 240 Query 241 GATGGACGAATAATGATAGATTTTATTGCTGAATACGCATGGTTACCGTTGATCCCGCCA 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 GATGGACGAATAATGATAGATTTTATTGCTGATTACGCATGGTTACCGTTGATCCCGCCA 300 Query 301 AATCTACAACCTGGTTACAGTAACAGTCAACTAACCTATGGACTTAATTTCGCTACTACA 360 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 AATCTACAACCTGGTTACAGTAACAGTCAATTAACCTATGGACTTAATTTCGCTACTACA 360 Query 361 GCCGCCGGAGTTTTCGCCGGAACTTTTCCCGGATCGGTAACTAATCTCTCGAAAGATTTG 420 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| Sbjct 361 GCCGCCGGAGTTTTCGCCGGAACGTTTCCGGGATCGGTAACTAATCTTTCGAAAGACTTG 420 Query 421 GGAACACAGTTAAACAACTTCAAGAACGTGGAGAAAACGTTGAGGTCTAATTTAGGAGAT 480 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 421 GGAACACAGTTAAACAACTTCAAGAACGTGGAGAAAACGTTGAGATCTAATTTAGGAGAT 480 Query 481 GCAGAGGCGAGGAGAGTAATCTCGAAAGCTGTTTATCTTTTTCACATAGGAGCAAATGAC 540 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 GCAGAGGCGAGAAGAGTAATCTCGAAAGCTGTTTATCTTTTTCACATCGGAGCAAATGAC 540 Query 541 TATCAATACCCATTCTTTGCAAATACCTCAACTTTTAGTAACACTACCAAAGAAAGATTC 600 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 541 TATCAATACCCATTCTTTGCCAATACCTCAACTTTTAGTAACACTACCAAAGAAAGATTG 600 Query 601 ATCGATTTCGTCA-TCGGTAACACAACGACTGTAATCGAGGAGTTGTATAAATTAGGAGC 659 |||| ||||||| || |||||||||| || || |||||||| ||||||||||||||||| Sbjct 601 GTCGAGTTCGTCATTC-GTAACACAACCACCGTCATCGAGGAATTGTATAAATTAGGAGC 659 Query 660 AAGGAAATTCGGATTCTTGAGCTTGGGTCCATTTGGTTGTACACCAAGCGCATTGATAAT 719 ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 660 AAGGAAATTTGGATTCTTGAGCTTGGGTCCATTTGGCTGTACACCAAGCGCATCGATAAT 719 Query 720 AAACAGTACAAAGATAGGATCTTGTTTCGAGCCAGTCA-CAGAGCTGATCAATCTCCATA 778 | || | ||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 720 AGACCGGGCAAAGATAGGATCTTGTTTCGAGCCGGT-AGCAGAGCTGATCAATCTCCATA 778 Query 779 ACCAAGAATTTCCAAAAGTCTTGAGGCGTCTAGAGCGCCGGTTATCCGGATTCAAATACG 838 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACCAAGAATTCCCAAAAGTCTTGAGGCGTCTAGAGCGCCGGTTATCCGGATTCAAATACG 838 Query 839 CTCTTCATGACTTTCACACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTT 898 ||||||| ||||||||||||||| |||||||||| |||||||| |||||||| ||||||| Sbjct 839 CTCTTCACGACTTTCACACTTCTTTATCCCAAAGGATCAACAACCCTTCTCGATACGGTT 898 Query 899 TTAAGGAAGGGGAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTG 958 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TCAAGGAAGGGAAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTG 958 Query 959 GATTCCGAAATGGACCATCGCAAGGTTACAAGCTATGCGAAAACGCTGATGATTACGTCT 1018 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 959 GATTCCGAAATGGACCATCGCAAGGTTACGAGCTATGCGAAAACGCTGATGATTACGTCT 1018 Query 1019 TCTTTGATCCTTCTCATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078 |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1019 TCTTTGATCCCTCTCATTTGTCGGAAAAGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078 Query 1079 GCGGACCACCTAATGTCACTGCACCTTACAATCTTAAAACATTGTTCAGACTCTAG 1134 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GCGGACCGCCTAATGTCACTGCACCTTACAATCTTAAAACATTGTTCAGACTCTAG 1134 > Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 Length=1131 Score = 599 bits (324), Expect = 2e-170 Identities = 862/1115 (77%), Gaps = 64/1115 (6%) Strand=Plus/Plus Query 31 ATCATCTTATTCATCTGCACTA-TAAGCTTATCGATCGTCTCGAT-TTCTTGC----A-A 83 |||||||| ||| ||| || | ||| ||||||||||| ||| || | ||| | | Sbjct 25 ATCATCTTCTTCGTCTATAC-AGTAATCTTATCGATCGGCTCAATCAAC-TGCAAAAACA 82 Query 84 AGAA-GATCTTAAAACGAACCAAGCCGCCTTGTTTGCGTTTGGAGATTCTCTGTTTGAAG 142 |||| ||||| ||| |||||||| || ||||| | ||| |||||||||||||| || | Sbjct 83 AGAACAATCTTGTAACAAACCAAGCTGCGTTGTTCGTGTTCGGAGATTCTCTGTTCGATG 142 Query 143 CCGGAAACAATAATTACTTCGACT-CTATCTCAAGTTTCCGATCAAATTTCTGGCCGTAT 201 |||||||||| || ||| |||| | | ||||||||||||| || ||| | |||||||| Sbjct 143 CCGGAAACAACAACTACATCGA-TACCGTCTCAAGTTTCCGGTCTAATATATGGCCGTAC 201 Query 202 GGTAAAACAACGTTC-AAGTTTCCAACGGGACGGGTCTCTGATGGACGAAT-AATGATAG 259 ||| ||| || ||| ||| |||| || ||| | |||| || |||||| | | | | | Sbjct 202 GGTCGAACCACTTTCAAAG-TTCCCACCGGAAGACTCTCAGACGGACGATTGATTCCT-G 259 Query 260 ATTTTATTGCTGA-ATACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCTGGTTAC 318 |||| || || || | ||||||||||||||||||||||||||||||||||||| | || Sbjct 260 ATTTCATCGCGGAGA-ACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCAAGCAAC 318 Query 319 AGTAACAGTCAACTAACCTATGGACTTAA-TTTCGCTACTACAGCCGCCGGAGTTTTCGC 377 |||||| |||| | ||||||||| | || ||| ||| || | | |||||||| ||| | Sbjct 319 GGTAACAATCAATTTACCTATGGAGT-AAGTTTTGCTTCTGCTGGCGCCGGAGCTTTAGT 377 Query 378 CGGAA-CTTTTCCCGGA-TCGGTAACTAATCTCTCGAAAGATTTGGGAACACAGTTAAAC 435 || || |||| || ||| | || | ||| ||| ||||||||||||| ||||| Sbjct 378 CGAAAGCTTT-CCTGGAAT-GG---C-AAT------AAA--TTTGGGAACACAGCTAAAC 423 Query 436 AACTTCAAGAACGTGGAGAAA-ACGTTGAGGTCT-AATTTAGGAGATGCAGAGGCGAGGA 493 ||||||||| | || || ||| | |||||| ||| |||| |||||||||||| | | | Sbjct 424 AACTTCAAGGATGTTGA-AAAGAGGTTGAGATCTGAATT-AGGAGATGCAGATACCAAAA 481 Query 494 GAGTAATCTCGAA-AGCTGTTTATCTTTTTCACATAGGAGCAAATGACTATCAATACCCA 552 | || |||| || |||||||||||| ||||| || |||| || |||||| || || Sbjct 482 GGGTTTTCTC-AAGAGCTGTTTATCTGTTTCATATCGGAGTTAACGACTATTTTTATCCT 540 Query 553 TTCTTTGCAAA-TACCTCAACTTTT-AGTAACACTACCAAAGA-AAGATTCATCGATTTC 609 |||| |||||| | |||||||||| | | || | ||||||| || |||| ||||||| Sbjct 541 TTCTCTGCAAACT-CCTCAACTTTCCAATC-CAATTCCAAAGAGAA-ATTCGTCGATTTT 597 Query 610 GTCATCGGTAACACAACGA-CTGTAATCGAGG-AGTTGTATAAATTAGGAGCAAGGAAAT 667 || ||||||||||| || | | || ||| || | || |||||| | |||| |||||||| Sbjct 598 GTTATCGGTAACACGAC-ATCCGTGATCAAGACACTT-TATAAAATGGGAGGAAGGAAAT 655 Query 668 TCGGATTCTTGAGCTTGGGTCCATTTGGTTGTACACCAAGCGCATTGATAATAAACAGTA 727 | ||||| |||| | |||| || | | ||| ||||||| ||||||||| | || | | Sbjct 656 TTGGATTTTTGAACGTGGGACCGTACGAATGTGCACCAAGTTCATTGATAAGAGACCGAA 715 Query 728 CAAAGATAGGATCTTGTTTCGAGCCAGTCACAGAGCTGATCA-ATCTCCATAACCAAGAA 786 |||||||||||||||||||| | || ||||| ||||| || | || | || ||| ||||| Sbjct 716 CAAAGATAGGATCTTGTTTCAAACCTGTCACTGAGCTTAT-AGATATGCACAAC-AAGAA 773 Query 787 -TTTCCAAAAGTCTTGAGGCGTCTAGAGCGCCGG-TTATCCGGATTCAAATACGCTCTTC 844 ||||| | ||||| ||||| ||| | || | ||||||||||| | ||||||||||| Sbjct 774 GTTTCCGGATGTCTTAAGGCGGCTACAACGT-GAATTATCCGGATTTAGATACGCTCTTC 832 Query 845 ATGACTTTCACACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTTTTAAGG 904 | |||| |||| |||| || ||| |||||||||| |||||||| || || || || | Sbjct 833 ACGACTATCACTCTTCACTTTCCGAAAGAATCAATAATCCTTCAAAATATGGGTTCAAAG 892 Query 905 AAGGGGAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTGGATTCC 964 ||||| ||| ||||||||| || || || || |||| ||||||||||| |||||| || Sbjct 893 AAGGGAAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACC 952 Query 965 GAA-ATGGACCATCGCAAGGTTACAAGCTATGCGAAAACGCTGAT-GATTACGTCTTCTT 1022 ||| | || ||||||||||||||| ||||||||||||||| | | ||||| | ||||| Sbjct 953 GAATAGGG-CCATCGCAAGGTTACGAGCTATGCGAAAACGTT-ACCGATTATTTGTTCTT 1010 Query 1023 TGAT-CCTTCTCATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGAGCG 1081 |||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||| ||| Sbjct 1011 TGATTCCT-CTCATTTGACGGAAAAGGCTCATCGACAGATCGCAGAGCTGATTTGGGGCG 1069 Query 1082 GACCACCTAATGTCACTGCACCTTACAATCTTAAA 1116 || |||| |||||||||| |||||| ||||| ||| Sbjct 1070 GATCACCCAATGTCACTGGACCTTATAATCTCAAA 1104 > Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 Length=1107 Score = 424 bits (229), Expect = 1e-117 Identities = 786/1045 (75%), Gaps = 78/1045 (7%) Strand=Plus/Plus Query 96 AACGAACCAAGCCGCCTTGTTTGCGTTTGGAGATTCTCTGTTTGAAGCCGGAAACAATAA 155 ||| |||||| |||| ||||| | ||||||||||||| |||| || || |||||||| || Sbjct 96 AACAAACCAATCCGCTTTGTTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAACAACAA 155 Query 156 TTACTTCGACT-CTATCTCAAGTTTCCGATCAAATTTCTGGCCGTATGGTAAAACAACGT 214 ||| |||| | || |||| ||| |||| || |||| ||||||||||||| ||||||| | Sbjct 156 CTACATCGA-TACTTTCTCTAGTGTCCGGTCTAATTACTGGCCGTATGGTCAAACAACAT 214 Query 215 TCAAGTTTCCAACGGGACGGGTCTCTGATGGACGAAT-AATGATAGATTTTATTGCTGAA 273 |||| | || || ||| | ||||| || ||||| | | | | ||||| || || || Sbjct 215 TCAAATCCCCTACTGGAAGAGTCTCCGACGGACGTTTGATTCCT-GATTTCATCGCGGAG 273 Query 274 TACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCTGGT-TACAGTAACAGTCAACT 332 |||||||||||||| |||||||| |||||| ||||||| | || ||||||| ||| | Sbjct 274 TACGCATGGTTACCATTGATCCCACCAAATTTACAACC-ACTCCACGGTAACAGCCAATT 332 Query 333 AACCTATGGACTTAATTTCGCTACTA-CAGCCGCCGGAGTTTTCGCCGGAA-CTTTTCCC 390 |||||||| | ||||| ||| | | | |||||||| ||| | ||||| ||||| || Sbjct 333 TACCTATGGGGTAAATTTTGCTTC-AGGTGGCGCCGGAGCTTTGGTCGGAACCTTTT-CC 390 Query 391 GGATCGGTAACTAATCTCTCGAAAGATTTGGGAACACAGTTAAACAACTTCAAGAACGTG 450 |||| || | | | || ||||| ||||||| ||||||||||||||||| || Sbjct 391 GGATTGG----TGA----T---AA-ATTTGAGAACACAATTAAACAACTTCAAGAAGGTT 438 Query 451 GAGAAAACGTTGAGGTCTAATTTAGGAGATGCAGAGGCGAGGAGAGTAATCTCGAA-AGC 509 || |||| |||||||||||| |||||||||| |||| || ||| || ||||| || ||| Sbjct 439 GAAAAAATGTTGAGGTCTAAGTTAGGAGATGTTGAGGGGAAGAGGGTTATCTC-AAGAGC 497 Query 510 TGTTTATCTT-TTTCACATAGGAGC-AAATGACTATCAATACCCATTCTTTGCAAA-TAC 566 ||||||| || ||||| || ||| | || || |||||||| || ||| | |||| | | Sbjct 498 TGTTTAT-TTGTTTCATATTGGA-CTCAACGATTATCAATATCCGTTCACTACAAACT-C 554 Query 567 CTCAACTTTT-AGTAACACTACCAAAGA-AAGATTCATCGATT-TCGTCATCGGTAACAC 623 || | |||| | | || | |||| || || || | |||||| | || | ||| Sbjct 555 TTCCATTTTTCAAT-CCATTTCCAACGAGAA-ATACGTCGATTAT-GTTGTTGGT----- 606 Query 624 AACGACTGTAATCGAGGA-GTTGTATAAATTAGGAGCAAGGAAATTCGGATTCTTGAGCT 682 ||| | || | | | || ||| | | | ||| | |||||| || |||||||||| | Sbjct 607 AAC-A-TG--A-C-A-GACGTT-T-T-CA--AGG-G-AAGGAAGTTTGGATTCTTGAACA 652 Query 683 TGGGTCCATTTGGTTGTACACCAAG-CGCATTGATAATA-AACAGTACAAAGATAGGATC 740 || |||| | |||| |||| || | ||||| | ||| | || |||||||||||||| Sbjct 653 CAGGACCATACGATTGTGCACC-AGCCTCATTGGTTATAGACCA-AACAAAGATAGGATC 710 Query 741 TTG-TTTCGAGCCAGTCAC-AGAGCTGATCAATCTCCATAACCAAGAATTTCC--AAAAG 796 ||| |||| |||| ||||| | ||||||||||||| || || |||||| ||| || | Sbjct 711 TTGTTTTC-AGCCGGTCACTA-AGCTGATCAATCTGCACAA-CAAGAAGCTCCTGAATGG 767 Query 797 TCTTGAGGCGTCTAGAGCGCCG-GTTATCCGGATTCAAATACGCTCTTCATGACTTTCAC 855 | |||||||| ||| | | | ||||||||||||||||| | || || |||| |||| Sbjct 768 T-TTGAGGCGGCTAAATC-ATGAACTATCCGGATTCAAATACTCCCTCCACGACTATCAC 825 Query 856 ACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTTTTAAGGAAGGGG-AGAT 914 ||||| || || ||||||| || |||||||| ||||| || |||| ||||| ||| Sbjct 826 ACTTCCCTCTCGGAAAGAATGAATAATCCTTCAAAATACGGGTTCAAGG-AGGGGAAGAA 884 Query 915 GGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTGGATTCCGAAAT-GGAC 973 ||||||||| || || || || ||||| ||||||||||| |||||| ||| ||| |||| Sbjct 885 GGCATGTTGTGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCG-AATGGGAC 943 Query 974 CATCGCAAGGTTACAAGCTATGCGAAAACGCTGA-TGATTACGTCTTCTTTGATCCTTCT 1032 || ||| |||| || |||| ||||||| | | || || | |||| |||||||| | Sbjct 944 TGTCACAAAATTACGAGTTATGTGAAAACG-TTACAGACTATTTGTTCTATGATCCTTTT 1002 Query 1033 CATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGAGCGGACC-ACCTAA 1091 ||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||| || Sbjct 1003 CATTTGACGGAAAAAGCTAATCAGCAGATCGCTGAGCTGATTTGGAGCGGACCGACC-AA 1061 Query 1092 TGTCACTGCACCTTACAATCTTAAA 1116 |||||| ||| || ||||| ||| Sbjct 1062 CATCACTGGACCCTATAATCTCAAA 1086 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5