BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14230.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929203 jgi|Araly1|929203|scaffold_301660.1 1825 0.0
Ahg923954 jgi|Araly1|923954|scaffold_105235.1 111 1e-23
> Ahg929203 jgi|Araly1|929203|scaffold_301660.1
Length=1423
Score = 1825 bits (988), Expect = 0.0
Identities = 1308/1451 (90%), Gaps = 68/1451 (5%)
Strand=Plus/Plus
Query 127 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCT 186
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 11 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCGCCGCCGAGGTCCCT 70
Query 187 CCGCGTCACTAACGAGTTTATCTGGCCGGATCTGAAAAACAAAGTG---AAAGCTTCAAA 243
||| ||||||| |||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 71 CCGTGTCACTAGCGAGTTTATCTGGCCGGATCTGAAAAACAAAGGGAAAAAAGCTTCGAA 130
Query 244 GAAGAGATCGAATAAGCGATCCGATTTCTTCGATCTTGACGATGATTTCGAAGCTGATTT 303
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 131 GAAGAGATCGAATAAGCGACCCGATTTCTTCGATCTGGACGATGAATTCGAAGCTGATTT 190
Query 304 CCAAGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACG--AT-GATGA---TGTCTT 357
|| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 191 CCGGGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACGAAATCGATGATGGTGTCTT 250
Query 358 CGTCAATGTTAAGCCTTTCGTCTTCACCGCAACTACTAAGCCCGTAGCTTCCGCTTTCGT 417
||||||||| |||||||| |||||||||||||||||||| |||||||||| | || | ||
Sbjct 251 CGTCAATGTGAAGCCTTTTGTCTTCACCGCAACTACTAAACCCGTAGCTT-C-CTCT-GT 307
Query 418 CTCC--ACTGGTATATATTTGGTAGGTTCAGCATATGCCAAGAAAACTGTAGAGTCCGCT 475
| || | | || | | ||||| ||||||| ||||||||||||||||||||||| |
Sbjct 308 CCCCGTTTTCGCATCCA-CT-GTAGGATCAGCATCTGCCAAGAAAACTGTAGAGTCCGAT 365
Query 476 GAGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGGATTAGGCAG 535
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 366 GGGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGAATTAGGCAG 425
Query 536 CGTCCTTGGGGAAAATGGGCTGCGGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 595
|| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 426 CGCCCCTGGGGCAAATGGGCTGCTGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 485
Query 596 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGATGCTGCAGCACGCAGA 655
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 486 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGACGCAGCAGCACGCAGA 545
Query 656 ATCCGTGGCACGAAAGCTAAGGTGAATTTTCCC-GAGGAGAAGAACCCTAGCGTCGTATC 714
||||| |||||||||||||||||||| |||||| ||||||||||||||| | ||| ||
Sbjct 546 ATCCGAGGCACGAAAGCTAAGGTGAA-TTTCCCAGAGGAGAAGAACCCT-TC--CGTCTC 601
Query 715 CCAGAAACGTCCTAGTGCTAAGACTAATAATCTTCAGAAATCAGTGGCTAAACCAAACAA 774
|||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||
Sbjct 602 CCAGAAACGTCCTACTGGTAAGACCAATAATCTTCAGAAACCAGTGGCTAAACCAAACAA 661
Query 775 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 721
Query 835 TG---AC-------A--ACTCTTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 882
|| || | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 722 TGATAACATGGGGAATGACTCCTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 781
Query 883 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGCTGGA-GGTAACAATGGATACC 941
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||
Sbjct 782 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGC-GGAAGGTAATAATGGATTCC 840
Query 942 AGTATTTCAGTTCCGATCAGGGCAGTAACTCCTTCGACTGTTCTGAGTTCGGGTGGAGTG 1001
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 841 AGTATTTCAGTTCCGATCAGGGAAGTAACTCATTCGACTGCTCTGAGTTCGGGTGGAGTG 900
Query 1002 ATCACGGCCCTAAAACACCCGAGATCTCTTCAATGCTTGTCAATAACAACGAAGCATCAT 1061
|||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 901 ATCACGGCCCCAAAACACCTGAGATCTCTTCAATGCTTGTCAATAACAACCAAGCACCAT 960
Query 1062 TTGTTGAAGAAACCAATGCAGCCAAGAAGCTCAAACCAAACTCTGATGAGTCAGACGATC 1121
| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 961 TCGTTGAAGAAACCAATGCAGCAAAGAAGCTCAAACCCAACTCTGATGATTCAGACGATC 1020
Query 1122 TGATGGCATACCTTGACAACGCCTTGTGGGACACCCCACTAGAAGTGGAAGCCATGCTTG 1181
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1021 TGATGGCATACCTTGACAACGCCTTATGGGACACTCCACTAGAAGTGGAAGCCATGCTTG 1080
Query 1182 GCGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAGTGGA-GCTATGGAGCTTA 1240
| ||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 1081 GTGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAATGGACG-TATGGAGCTTA 1139
Query 1241 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGTTTG 1300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGCTTG 1199
Query 1301 TAAATAAAGCTGTGT-T-GGATTTTGCTGTTGGGGGATGGTACAAGTCACACCTCAAGCT 1358
||||||||||||||| | ||||| |||||||||||| ||||||||||||||| | |||||
Sbjct 1200 TAAATAAAGCTGTGTGTTGGATTCTGCTGTTGGGGGGTGGTACAAGTCACACTTGAAGCT 1259
Query 1359 C-TATGCATTGGTATCTCATGAGCCTCTCTTCCATAGAGAGTTTCTCTTTTAATTTTGTC 1417
| | ||||||||| | || | | || ||| | ||||||||||||||||
Sbjct 1260 CGT-TGCATTGGT-T-TC-T-----T-------AT-GAG--TCTCTCTTTTAATTTTGTT 1300
Query 1418 GAAATAAAAAAGGTGTGATGAAGTAAATAGAGGTATAATAATATCTATCTATTAAGTCTT 1477
|||||||||| ||||||||||||||||||||||| ||||| | ||||||| | ||||||
Sbjct 1301 GAAATAAAAA-GGTGTGATGAAGTAAATAGAGGTGTAATA-T--CTATCTAATGAGTCTT 1356
Query 1478 GTTTTGTTCTTTCATTTTTGTATTTCTTTTCTATTTAAAAGACAGTTTATT-AGTCTTCT 1536
|||| ||| || |||| || ||||||| ||||||||||||||||||||| | ||||||
Sbjct 1357 GTTTCCTTCATT--TTTT-GTTTTTCTTT-CTATTTAAAAGACAGTTTATTTAATCTTCT 1412
Query 1537 GAGCTCTCTTT 1547
||||| |||||
Sbjct 1413 GAGCTATCTTT 1423
> Ahg923954 jgi|Araly1|923954|scaffold_105235.1
Length=1078
Score = 111 bits (60), Expect = 1e-23
Identities = 81/91 (89%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 136 CATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCTCCGCGTCAC 195
||||||||||||||||||||||||||||||||| || ||||||||||| | ||| || ||
Sbjct 20 CATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGCCGAGGTCTCGCCGTGTTAC 79
Query 196 TAACGAGTTTATCTGGCCGGATCTGAA-AAA 225
| ||||||||| |||||||||||||| |||
Sbjct 80 CAGCGAGTTTATTTGGCCGGATCTGAAGAAA 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5