BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14240.1
Length=2645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478841 jgi|Araly1|478841|fgenesh2_kg.3__1542__AT3G14240.1 3989 0.0
Ahg933061 jgi|Araly1|933061|scaffold_401049.1 612 5e-174
Ahg940682 jgi|Araly1|940682|scaffold_601226.1 592 6e-168
> Ahg478841 jgi|Araly1|478841|fgenesh2_kg.3__1542__AT3G14240.1
Length=2602
Score = 3989 bits (2160), Expect = 0.0
Identities = 2478/2627 (94%), Gaps = 39/2627 (1%)
Strand=Plus/Plus
Query 1 ACACACTAGGGAAACCACAGTTCTCTTCTATCCTCTCTTTCTCCGCTTCTGTAGCAATGT 60
|||||||||||||||||||| | || || ||||||||||||||| ||||||||||||||
Sbjct 1 ACACACTAGGGAAACCACAG-T-TC-TC--TCCTCTCTTTCTCCGGTTCTGTAGCAATGT 55
Query 61 CAATGTGGTACCCTCTACCTTCTTCTTCTTC--C-TCCACTCACTAACCAAATCCAGAAT 117
||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 56 CAATGTGGTACCCTCTACCTTCTTCTTCTTCTTCTTCCACTCACTAACCAAATCTAGAAT 115
Query 118 CAACAATAATAGAAAAAGCCCTAACTTTCTCCGTCGATGGc--t-ttcttcttctacttt 174
| || |||||||||||||||| ||||| | |||||||||||||||
Sbjct 116 ---C-----------AA--CCTAACTTTCTCCGTCAATGGCTTTCTTCTTCTTCTACTTT 159
Query 175 ttcttcctcttgactctttcttctccttcttcttctgcttcctcttcaaactccttgact 234
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 160 TTCTTCCTCTTGACTCTTTCTTCTCCGTCTTCTTCTTCTTCCTCTTCAAACTCCTTGACT 219
Query 235 tACATCGTCCACGTCGACCACGAAGCTAAACCCTCAATCTTCCCCACTCATTTTCACTGG 294
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 220 TACATCGTCCACGTCGACCACGAAGCTAAACCTTCAATCTTCCCCACTCATCGTCACTGG 279
Query 295 TACACTTCCTCTCTTGCCTCACTCACCTCTTCTCCTCCCTCCATTATCCACACATACGAC 354
||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 280 TACACTTCCTCCCTTGCCTCACTCACATCTTCTCCTCCCTCTATTATCCAAACATACGAC 339
Query 355 ACCGTTTTCCATGGCTTCTCCGCTAGACTCACTTCACAAGACGCTAGTCAACTCTTAGAC 414
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 340 ACCGTTTTCCATGGCTTCTCCGCTAGACTCACTTCACAAGACGCTAGCCACCTCTTAGAC 399
Query 415 CATCCTCATGTCATCTCTGTTATCCCGGAACAAGTCCGTCACTTGCACACCACTCGTTCC 474
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 400 CATCCTCATGTCATCTCTGTAATCCCAGAGCAAGTCCGTCACTTGCACACCACTCGTTCC 459
Query 475 CCTGAGTTTCTTGGTCTTAGGTCCACCGACAAAGCGGGTCTACTCGAAGAGTCTGATTTC 534
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 460 CCTGAGTTTCTTGGTCTTAGGTCCACCGACAAAGCGGGTCTACTTGAAGAATCCGATTTC 519
Query 535 GGGTCGGATCTAGTTATCGGAGTTATCGATACTGGTGTTTGGCCCGAAAGACCTAGCTTT 594
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 520 GGGTCGGATCTTGTTATCGGAGTTATCGATACTGGTATTTGGCCTGAAAGACCTAGCTTT 579
Query 595 GATGACCGTGGTCTTGGTCCTGTTCCCATTAAATGGAAAGGCCAATGTATCGCTTCCCAA 654
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 580 GATGACCGTGGTCTTGGTCCTGTTCCTATTAAATGGAAAGGCCAATGTATCGCTTCCCAA 639
Query 655 GATTTTCCGGAGTCTGCTTGTAACCGTAAACTCGTCGGAGCTAGATTCTTCTGCGGTGGG 714
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GATTTTCCGGAGTCGGCTTGTAACCGTAAACTCGTCGGAGCTAGATTCTTCTGCGGTGGT 699
Query 715 TATGAAGCAACCAACGGGAAAATGAATGAAACGACTGAGTTTCGCTCTCCGCGTGACTCC 774
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 700 TATGAAGCAACCAACGGGAAAATGAATGAAACGACGGAGTTTCGTTCTCCGCGTGACTCT 759
Query 775 GATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCGTTACGTTTTTCCGGCGTCA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCGTTACGTTTTTCCGGCGTCA 819
Query 835 ACTCTCGGCTACGCTCACGGCGTCGCTGCTGGGATGGCTCCAAAAGCTAGACTCGCCGCT 894
||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 820 ACTCTAGGCTACGCTCGCGGCGTCGCTGCTGGGATGGCTCCGAAAGCTAGACTCGCCGCT 879
Query 895 TACAAAGTCTGTTGGAACTCCGGTTGTTACGACTCCGATATCTTAGCCGCTTTCGACACC 954
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 880 TACAAAGTTTGTTGGAACTCCGGTTGTTACGACTCCGATATCCTAGCCGCTTTCGACACC 939
Query 955 GCCGTTGCCGACGGTGTCGATGTCATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTAT 1014
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 940 GCCGTTGCCGACGGCGTCGATGTTATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTAT 999
Query 1015 TACCTAGACGCTATCGCTATTGGAGCTTTTGGAGCTATTGACAGAGGCATATTCGTCTCT 1074
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1000 TACCTCGACGCTATCGCCATTGGAGCTTTCGGAGCTATTGACAGAGGAATATTCGTCTCT 1059
Query 1075 GCTTCCGCCGGTAACGGAGGTCCCGGTGCTTTAACGGTGACAAATGTTGCTCCGTGGATG 1134
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1060 GCTTCCGCCGGAAACGGAGGTCCCGGTGCTTTAACGGTGACGAATGTTGCTCCATGGATG 1119
Query 1135 ACAACAGTCGGAGCTGGAACAATCGATAGGGATTTTCCGGCCAATGTGAAACTCGGTAAC 1194
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ACAACAGTCGGAGCAGGAACAATCGATAGGGATTTTCCGGCCAATGTGAAACTCGGTAAT 1179
Query 1195 GGGAAGATGATTTCTGGTGTTAGTGTATACGGTGGACCGGGTCTGGATCCGGGTCGAATG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GGGAAGATGATTTCTGGTGTTAGTGTATACGGTGGACCGGGTCTGGATCCGGGTCGAATG 1239
Query 1255 TACCCGCTTGTTTACGGTGGTAGTTTACTAGGCGGCGATGGTTACTCATCGTCTCTGTGT 1314
|| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1240 TATCCGCTTATTTACGGTGGTAGTTTACTCGGCGGCGATGGTTACTCTTCGTCTCTGTGT 1299
Query 1315 CTTGAAGGCTCGTTGGATCCGAATTTAGTGAAGGGAAAGATCGTTCTTTGTGATAGAGGA 1374
|||||||||||||||||||||||| | || |||||||| |||||||||||||| ||||||
Sbjct 1300 CTTGAAGGCTCGTTGGATCCGAATCTGGTTAAGGGAAAAATCGTTCTTTGTGACAGAGGA 1359
Query 1375 ATCAATTCTAGAGCAACCAAAGGTGAGATCGTACGGAAAAATGGAGGCTTGGGGATGATT 1434
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1360 ATCAATTCTAGAGCAACCAAAGGTGAAATCGTACGGAAAAATGGAGGCTTGGCGATGATT 1419
Query 1435 ATAGCGAATGGTGTGTTTGACGGTGAAGGTTTAGTAGCTGATTGCCACGTGTTACCGGCG 1494
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1420 ATAGCGAATGGTGTGTTCGACGGCGAAGGTTTAGTCGCTGATTGCCACGTGTTACCGGCG 1479
Query 1495 ACATCTGTTGGTGCTTCTGGAGGAGATGAGATTCGTAGGTATATCTCTGAATCATCCAAA 1554
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1480 ACATCTGTTGGTGCTTCTGGAGGAGATGAGATTCGAAGGTATATCTCTGAATCATCCAAA 1539
Query 1555 TCTCGTTCATCGAAACATCCAACGGCTACGATTGTTTTCAAAGGTACCCGACTTGGGATC 1614
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1540 TCTCGTTCATCGAAACATCCAACGGCTACGATTGTTTTCAAAGGGACCCGACTTGGGATC 1599
Query 1615 CGACCTGCACCGGTTGTTGCATCTTTCTCTGCTCGTGGTCCTAATCCAGAGACGCCGGAG 1674
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1600 CGACCTGCACCGGTTGTGGCATCTTTCTCTGCTCGTGGACCTAATCCAGAGACGCCGGAG 1659
Query 1675 ATTCTTAAACCGGATGTAATCGCACCTGGTTTGAATATTCTAGCTGCTTGGCCTGACCGG 1734
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1660 ATTCTTAAACCGGATGTAATCGCACCTGGTTTGAACATTCTAGCTGCTTGGCCTGACCGG 1719
Query 1735 ATTGGTCCATCTGGTGTTAC-TTCTGATAACCGGAGAACTGAGTTCAACATTTTATCAGG 1793
||||||||||| ||||| || |||||||||||| |||||||| |||||||||||||||||
Sbjct 1720 ATTGGTCCATCGGGTGT-ACCTTCTGATAACCGCAGAACTGAATTCAACATTTTATCAGG 1778
Query 1794 CACTTCGATGGCGTGCCCGCACGTGTCTGGTCTAGCTGCTTTGCTTAAGGCGGCTCATCC 1853
|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 1779 CACTTCGATGGCGTGCCCTCACGTGTCGGGTCTAGCTGCTCTGCTTAAGGCGGCTCATCC 1838
Query 1854 GGATTGGAGTCCGGCGGCGATAAGATCAGCATTGATAACCACGGCTTACACGGTTGATAA 1913
||||||||||||||||||||||||||||| ||||| || |||||||||| ||| |||||
Sbjct 1839 TGATTGGAGTCCGGCGGCGATAAGATCAGCCTTGATGACTACGGCTTACAGGGTGGATAA 1898
Query 1914 CAGCGGTGAGCCGATGATGGATGAGTCCACTGGCAATACATCTTCGGTTATGGATTATGG 1973
| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1899 CCGCGGTGATCCAATGATGGATGAGTCCACTGGCAATACATCATCGGTTATGGATTATGG 1958
Query 1974 TTCGGGTCATGTTCACCCAACCAAAGCTATGGATCCGGGATTAGTCTATGATATAACATC 2033
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 1959 GTCGGGTCATGTTCATCCAACCAAAGCTATGGATCCGGGACTAGTCTACGATATAACACC 2018
Query 2034 TTATGATTATATCAACTTCTTGTGTAATTCTAACTACACTAGAACCAACATTGTGACAAT 2093
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2019 TTATGATTATATCAACTTCTTGTGTAATTCTAACTACACTGGAACCAACATTGTGACAAT 2078
Query 2094 AACCCGTCGCCAAGCGGACTGTGACGGTGCAAGACGAGCGGGACACGTCGGGAATTTAAA 2153
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct 2079 AACCCGTCGCCAAGCGGACTGCGACGGTGCGAGACGAGCGGGACACGTAGGGAATTTGAA 2138
Query 2154 CTACCCGTCGTTCTCTGTCGTGTTTCAGCAGTATGGAGAGAGTAAAATGTCGACACATTT 2213
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2139 CTACCCGTCGTTCTCTGTCGTGTTTCAGCAGTATGGAGAGGGTAAAATGTCGACACATTT 2198
Query 2214 CATTAGGACTGTGACAAATGTAGGCGATTCGGATTCGGTTTACGAGATTAAGATTAGGCC 2273
||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2199 CATTAGGACAGTGACAAATGTAGGCGATTCTGATTCAGTCTACGAGATTAAGATTAGGCC 2258
Query 2274 GCCTAGAGGGACTACGGTGACGGTTGAGCCGGAGAAGCTATCGTTCAGACGGGTGGGGCA 2333
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2259 GCCGAGAGGGACTACGGTGACTGTTGAGCCGGAGAAGCTATCGTTTAGACGGGTGGGGCA 2318
Query 2334 GAAACTGAGTTTTGTTGTTAGGGTTAAGACCACAGAGGTGAAGTTGTCACCAGGAGCGAC 2393
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||
Sbjct 2319 GAAACTGAGTTTTGTTGTTAGGGTTAGGACCACAGAGGTGAAGCTGTCACCCGGAGCAAC 2378
Query 2394 AAATGTGGAGACTGGTCATATAGTTTGGTCAGATGGGAAACGGAATGTGACAAGTCCCTT 2453
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2379 AAATGTGCAGACTGGTCATATAGTTTGGTCAGACGGGAAACGAAATGTGACAAGTCCCTT 2438
Query 2454 GGTGGTCACTCTTCAACAACCTCTTTGAAGGGGTTTAGGATCTGGTGACCGGGAAAATTC 2513
|||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 2439 GGTGGTTACTCTTCAACAACCTCTGTGAAGGGTTTTAGGATTTGGTGACCGGGAAAATTC 2498
Query 2514 TGGTCTCTGTTTGTTGTACTAGTGAAAAAGAAAGATCATAAGTTGTTGTTGTTGTCGTCT 2573
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2499 TGGTCTCTGTTTGT-GTA--AGTGAAAAAGAAAGATCATAAGTTGTTGTTGTCGTCGTCT 2555
Query 2574 ATGATCTTTGTTGG-TGT------AATATAAATATGTATCTTTTGTT 2613
|||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2556 ATGATCTTTGTTGGGTGTTTGTGTAATATAAATATGTATCTTTTGTT 2602
> Ahg933061 jgi|Araly1|933061|scaffold_401049.1
Length=421
Score = 612 bits (331), Expect = 5e-174
Identities = 377/399 (94%), Gaps = 3/399 (1%)
Strand=Plus/Plus
Query 716 ATGAAGCAACCAACGGGAAAATGAATGAAACGACTGAGTTTCGCTCTCCGCGTGACTCCG 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGAAGCAACCAACGGGAAAATGAATGAAACGACTGAGTTTCGTTCTCCGCGTGACTCCG 60
Query 776 ATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCGTTACGTTTTTCCGGCGTCAA 835
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 61 ATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCATTACGTTTTTCTGGCGTCAA 120
Query 836 CTCTCGGCTACGCTCACGGCGTCGCTGCTGGGATGGCTCCAAAAGCTAGACTCGCCGCTT 895
|||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCTTGGCTATGCTCGCGGCGTCGCTGCTGGGATGGCTCCGAAAGCTAGACTCGCCGCTT 180
Query 896 ACAAAGTCTGTTGGAACTCCGGTTGTTACGACTCCGATATCTTAGCCGCTTTCGACACCG 955
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 ACAAAGTCTGTTGGAACTCCGGTTGTTACGACTCCGATATCTTAGCTGCTTTTGACACCA 240
Query 956 CCGTTGCCGACGGTGTCGATGTCATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTATT 1015
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGTAGCCGACGGTGTCGATGTCATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTATT 300
Query 1016 ACCTAGACGCTATCGCTATTGGAGCTTTTGGAGCTATTGACAGAGGCATATTCGTCTCTG 1075
|||| || || ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACCTCGATGCCATCGCCATTGGAGCTTTTGGAGCTATTGACAGAGGGATATTCGTCTCTG 360
Query 1076 CTTCCGCCGGTAACGGAGGTCCCGGT-GCTTTAACGGTG 1113
|||||||||| ||||||||||| | | | |||| |||||
Sbjct 361 CTTCCGCCGGAAACGGAGGTCCTGCTTG-TTTA-CGGTG 397
> Ahg940682 jgi|Araly1|940682|scaffold_601226.1
Length=421
Score = 592 bits (320), Expect = 6e-168
Identities = 360/380 (95%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 716 ATGAAGCAACCAACGGGAAAATGAATGAAACGACTGAGTTTCGCTCTCCGCGTGACTCCG 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGAAGCAACCAACGGGAAAATGAATGAAACGACTGAGTTTCGTTCTCCGCGTGACTCCG 60
Query 776 ATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCGTTACGTTTTTCCGGCGTCAA 835
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCATTACGTTTTTCCGGCGTCAA 120
Query 836 CTCTCGGCTACGCTCACGGCGTCGCTGCTGGGATGGCTCCAAAAGCTAGACTCGCCGCTT 895
|||| ||||| |||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCTTGGCTATGCTCGCGGCATCGCTGCTGGGATGGCTCCGAAAGCTAGACTCGCCGCTT 180
Query 896 ACAAAGTCTGTTGGAACTCCGGTTGTTACGACTCCGATATCTTAGCCGCTTTCGACACCG 955
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 ACAAAGTCTGTTGGAACTCCGGTTGTTACGACTCCGATATCTTAGCTGCTTTTGACACCA 240
Query 956 CCGTTGCCGACGGTGTCGATGTCATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTATT 1015
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 CCGTAGCCGACGGTGTCGATGTCATCTCTCTTTCCGTTGGAGGCGTCGTGGTTCCTTATT 300
Query 1016 ACCTAGACGCTATCGCTATTGGAGCTTTTGGAGCTATTGACAGAGGCATATTCGTCTCTG 1075
|||| || || ||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 301 ACCTCGATGCCATCGCCATTGGAGCTTTCAGAGCTATTGACAGAGGGATATTCGTCTCTG 360
Query 1076 CTTCCGCCGGTAACGGAGGT 1095
|||||||||| |||||||||
Sbjct 361 CTTCCGCCGGAAACGGAGGT 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99758351655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5