BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14250.1 Length=949 Score E Sequences producing significant alignments: (Bits) Value Ahg478842 jgi|Araly1|478842|fgenesh2_kg.3__1543__AT3G14250.1 1225 0.0 > Ahg478842 jgi|Araly1|478842|fgenesh2_kg.3__1543__AT3G14250.1 Length=912 Score = 1225 bits (663), Expect = 0.0 Identities = 820/897 (91%), Gaps = 6/897 (1%) Strand=Plus/Plus Query 13 TCATCGTCGTCAAGCACAAAGGTGGACACCGATATGTTGGTAGACGAAACCTACCTCTCT 72 ||||| || |||||||||||||||||||||||| |||||||||| ||||||||| ||||| Sbjct 13 TCATCATCATCAAGCACAAAGGTGGACACCGATGTGTTGGTAGATGAAACCTACTTCTCT 72 Query 73 GCTTTATTCGATTACGATGAAATTTTCCCAATCGCCGACGAAAGCTATGCTACGGAGATC 132 ||||| ||||||||||||||| ||||||||||| ||||||||| ||| ||||||||| || Sbjct 73 GCTTTGTTCGATTACGATGAAGTTTTCCCAATCTCCGACGAAAACTACGCTACGGAGCTC 132 Query 133 CATCTCCAAGAAGCTATGTTTTCTTCTTTTGGCGCTTCTACTGTTGGTGTTAATCATCAT 192 ||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||| Sbjct 133 CATCTCCAAGAAGCTCTGTTTTCTTCCATTGTCGCTTCTACTGGTGGTGTTAATCATCAT 192 Query 193 CCTCAAGTCCATAGGAATCTAGTCACGCTGGTTAAGCAGGAACCGGAGATTAAAGCCGAG 252 || |||||||| |||||||| ||||||| ||||||||||||||||||||| ||| ||||| Sbjct 193 CCCCAAGTCCAAAGGAATCTCGTCACGCGGGTTAAGCAGGAACCGGAGATCAAAACCGAG 252 Query 253 AATGAACCCATGGAACCATCAAGAAGGTTATGTATGATCTGTATGGACGAAAAACCTTCC 312 |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 253 AATGAACCCACCGAACCATCGAGAAGGTTTTGTATGATCTGTATGGACGAAAAACCTTCC 312 Query 313 TCAGACATCTTCCGAGGAACCACTAACTGCACTCACGCCTATTGCACCGACTGTACTGTC 372 || |||||||||||||||||||||||||| |||| ||| ||||| ||||| || ||| Sbjct 313 TCCGACATCTTCCGAGGAACCACTAACTGTGTTCACTTCTACTGCACAGACTGCACCGTC 372 Query 373 CGTTACGTGGCAACTAAGATAAAAGAAAACGCATCGAGGATCAAATGCCCTGACGTGGAG 432 || |||||||| |||||||| |||||||||||| ||||||||||||| |||||||||||| Sbjct 373 CGGTACGTGGCGACTAAGATCAAAGAAAACGCAGCGAGGATCAAATGTCCTGACGTGGAG 432 Query 433 TGCACGCGA-CTGATAGAGCCTTACACGTGTCGAGATCTAATCCCTAAGGATGTATTCGA 491 ||||||| | ||||||||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 433 TGCACGC-ACCTGATAGAGCCATACACGTGTCGAGATCTAATCCCCAAGGACGTTTTCGA 491 Query 492 CCGTTGGGAGAAAATCTTGTGCGAGTCTTTGATCTCCTCGTGGGACAAATTCTATTGTCC 551 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 492 CCGTTGGGATAAAATCTTGTGCGAGTCTTTGATCTCCTCGTGGGACAAATTCTACTGTCC 551 Query 552 GTTCAAAGATTGTTCGGCGATGATGGTGAACAATGAAAATGG-AGATGCTAACGTGACGC 610 ||||||||| |||||||| |||||||||||| ||||| ||| | |||| |||||||||| Sbjct 552 GTTCAAAGACTGTTCGGCTATGATGGTGAACGATGAAGGTGGTA-ATGCAAACGTGACGC 610 Query 611 AGACGGAGTGT-CGTTCTTGTCATAGACTGTTCTGCGTGCAGTGTAAGGTGACATGGCAT 669 ||||||||||| || |||||||| |||| ||||| ||| ||||||||||||| |||||| Sbjct 611 AGACGGAGTGTCCG-TCTTGTCACCGACTCTTCTGTGTGAAGTGTAAGGTGACGTGGCAT 669 Query 670 GCGGGGATTGGGTGTGATGAGTTTCAAAGATTTGGGAATACGAAGAAGAAGAGTAGTGAT 729 ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| Sbjct 670 GCGGGGATTGGGTGTGATGAGTTCCAGAGATTTGGGAATAAGAAGAAGAAGAGTAGTGAT 729 Query 730 GAAGACGATGCTTTGTTGATTCAGATGGCAAAAAATAAGCAGTGGAGAAGGTGTCCTAGT 789 || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 730 GACGAAGATGCTTTGTTGATTCAGATGGCGAAAAATAAGCAGTGGAGAAGGTGTCCTAGT 789 Query 790 TGCAAATTCTATGTTGATAAAGTCGAGGGTTGTCAACATATAAAATGCAGGTGTGGATAT 849 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 790 TGCAAATTCTATGTTGATAAAGTTGAAGGTTGTCAACATATAAATTGCAGGTGTGGATAT 849 Query 850 CAGTTTTGCTATGGTTGTGGATCTGTGTGGAGTTCTTCTCACGCATGCCAAATTCGT 906 |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| Sbjct 850 CAGTTTTGCTATGGTTGTGGATCTGTGTGGGGTTCTTCTCACGTATGCCAAATCCGT 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35225575308 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5