BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14260.1
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478843 jgi|Araly1|478843|fgenesh2_kg.3__1544__AT3G14260.1 1284 0.0
Ahg904360 jgi|Araly1|904360|Al_scaffold_0003_1488 1081 0.0
> Ahg478843 jgi|Araly1|478843|fgenesh2_kg.3__1544__AT3G14260.1
Length=917
Score = 1284 bits (695), Expect = 0.0
Identities = 857/930 (92%), Gaps = 32/930 (3%)
Strand=Plus/Plus
Query 38 TATATGCAAATATACCGACGACCTTTTGAGACAAAAACTTGGCA-ATATCGAATCTGTCC 96
|||||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 2 TATATGCAAATAAACCGACGACCTTTTGAAACAAAAACTTGGCAGA-ATCGAATCTGTCC 60
Query 97 AGCAGAGACTATGGTGAAGATTCATCCCGATCTAACAACCTCCGGCGCCGGAGAAGAAAC 156
| | ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 61 ATCGGAGACTATGGTGAAGATTCATCCCGATCTGATAACCTCCGGCACCGGAGAAGAAAC 120
Query 157 AAGT-TCACCGTACTTGACGACGGAGCAAGAGAGTTTCACTATATGGATGAAGTCGTTGG 215
|| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AA-TATCGCCGTACTTGACGACGGAGCAAGAGACTTTCACTATATGGATGAAGTCGTTGG 179
Query 216 TGTTCAACACAAATGGCTGCACCGTCTTCGATTCCAAA-GGAAACATAATTTATCGTGTC 274
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 180 TGTTCAACACAAATGGCTGCACCGTCTTCGATTCCAAAGGGAAA-ATAATCTATCGTGTC 238
Query 275 GACAATTATAATTCTAAGAGCTGTCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTC 334
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 GATAATTATAACTCTAAGAGCTGCCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTC 298
Query 335 TTGTTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACATGGGAAGGATATAGATCA 394
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 TTGTTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACTTGGGAAGGATATAGATCA 358
Query 395 TCATCAGCAACAGTTGAATCAACAACAAAACTAGAATATTTTCGAGTGAAAAATAATGTT 454
||||| | ||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 359 TCATCTGGAACAGCTGAATCAACGACAAAACTTGAATATTTTCGAGTGAAAAATAATGTT 418
Query 455 TTTCAAGTTCCAAATAAAGATTCATCATCTTCGTATAGAGTCAACGCGGGATCATGTAGA 514
|||||| |||| |||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 419 TTTCAAATTCCGAATAAAGATTCATCATCTTCCTATAGAGTCATCGCGGGATCGTGTAGA 478
Query 515 AACGATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGAT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AACGATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGAT 538
Query 575 AATTGTGGAAAACTATTGGCAGAAGTGAAGAGAAAACAATCGATAAACGGTTTGAAGTTG 634
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 539 CACTGTGGAAAACTATTGGCAGAAGTGAAGAGAAAGCAATCGATAAATGGTTTGAAGTTA 598
Query 635 GGAGATGATGTTTTGACGATGATGGTGGAGTCACAAGTTGATCACTCTTTCATCATTGGA 694
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 GGAGATGATGTTTTGACGATGATGGTTGAGTCACAAGTTGATCACTCTTTCATCATTGGA 658
Query 695 CTTGTTTTAGCTCATAGTCTTATCAATTGTATACTGTAAAAGGTAAATACTTTAC----C 750
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 659 CTTGTTTTAGCTCATAGTCTTATCAATTGTATACTGTAACAGGTATATACTTTACTTAAC 718
Query 751 -GTT-GCTAAATTGATGAGATTTTTGGGTTGTAAACTA-tttttttATTTT-AGGTTTCC 806
||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 719 CGTTTGCTAAATTGATGAGATTTTTGGGTTGTAAACTAGTTTTTTTATTTTTAGGTT-CC 777
Query 807 ACAAATTTTGTAGTGTATATACTTACTTTATCGAAGTACAACTAATGTGACAATGTTATA 866
|||||||||| ||| || |||| | | ||||||||||||||| |||||| |||
Sbjct 778 GCAAATTTTGTCTTGT-TA--CTTA-TC-A---AAGTACAACTAATGTTACAATGGTATT 829
Query 867 TCT--GATGATGTTACTTGTTGTAAGGTAGAGTTTTAATAAAGTGAGTGTAAGCTCTCTT 924
| | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 830 T-TAAGA-GATGTTACTTGTTGTAAAGTAGAGTTTTAATAAAGTGAGTGTAAGCTCTCTT 887
Query 925 TT-----CTTCGTTGAAAATGTTCTTAAAC 949
|| ||||||||||||||||||| |||
Sbjct 888 TTAATTTCTTCGTTGAAAATGTTCTTCAAC 917
> Ahg904360 jgi|Araly1|904360|Al_scaffold_0003_1488
Length=693
Score = 1081 bits (585), Expect = 0.0
Identities = 660/696 (95%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 41 ATGCAAATATACCGACGACCTTTTGAGACAAAAACTTGGCA-ATATCGAATCTGTCCAGC 99
||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||| |
Sbjct 1 ATGCAAATAAACCGACGACCTTTTGAAACAAAAACTTGGCAGA-ATCGAATCTGTCCATC 59
Query 100 AGAGACTATGGTGAAGATTCATCCCGATCTAACAACCTCCGGCGCCGGAGAAGAAACAAG 159
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 60 GGAGACTATGGTGAAGATTCATCCCGATCTGATAACCTCCGGCACCGGAGAAGAAACAA- 118
Query 160 T-TCACCGTACTTGACGACGGAGCAAGAGAGTTTCACTATATGGATGAAGTCGTTGGTGT 218
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 TATCGCCGTACTTGACGACGGAGCAAGAGACTTTCACTATATGGATGAAGTCGTTGGTGT 178
Query 219 TCAACACAAATGGCTGCACCGTCTTCGATTCCAAA-GGAAACATAATTTATCGTGTCGAC 277
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 179 TCAACACAAATGGCTGCACCGTCTTCGATTCCAAAGGGAAA-ATAATCTATCGTGTCGAT 237
Query 278 AATTATAATTCTAAGAGCTGTCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTCTTG 337
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 AATTATAACTCTAAGAGCTGCCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTCTTG 297
Query 338 TTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACATGGGAAGGATATAGATCATCA 397
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 TTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACTTGGGAAGGATATAGATCATCA 357
Query 398 TCAGCAACAGTTGAATCAACAACAAAACTAGAATATTTTCGAGTGAAAAATAATGTTTTT 457
|| | ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 358 TCTGGAACAGCTGAATCAACGACAAAACTTGAATATTTTCGAGTGAAAAATAATGTTTTT 417
Query 458 CAAGTTCCAAATAAAGATTCATCATCTTCGTATAGAGTCAACGCGGGATCATGTAGAAAC 517
||| |||| |||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 418 CAAATTCCGAATAAAGATTCATCATCTTCCTATAGAGTCATCGCGGGATCGTGTAGAAAC 477
Query 518 GATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGATAAT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 GATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGATCAC 537
Query 578 TGTGGAAAACTATTGGCAGAAGTGAAGAGAAAACAATCGATAAACGGTTTGAAGTTGGGA 637
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 538 TGTGGAAAACTATTGGCAGAAGTGAAGAGAAAGCAATCGATAAATGGTTTGAAGTTAGGA 597
Query 638 GATGATGTTTTGACGATGATGGTGGAGTCACAAGTTGATCACTCTTTCATCATTGGACTT 697
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 GATGATGTTTTGACGATGATGGTTGAGTCACAAGTTGATCACTCTTTCATCATTGGACTT 657
Query 698 GTTTTAGCTCATAGTCTTATCAATTGTATACTGTAA 733
||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTTTAGCTCATAGTCTTATCAATTGTATACTGTAA 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35263698225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5