BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14280.1
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478845 jgi|Araly1|478845|fgenesh2_kg.3__1546__AT3G14280.1 1031 0.0
> Ahg478845 jgi|Araly1|478845|fgenesh2_kg.3__1546__AT3G14280.1
Length=735
Score = 1031 bits (558), Expect = 0.0
Identities = 697/759 (92%), Gaps = 29/759 (4%)
Strand=Plus/Plus
Query 1 CAATCATCGGAATTTATAATTTTCTTCTCTGAGAACTATAAACCAAACGAGTTGTCCAAA 60
||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||
Sbjct 1 CAATCATCGGAATTTATAATTTTGATCT-TGAGACCTATAAACCAAACGATTTGTCCAAA 59
Query 61 AAGAAGAGATCAAAGTTTCTTCTTGAAGAAAGAAAGAAACACAAAAGCTATGGCATATTC 120
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 60 AAGAAGAGATCAAAGTTTCTTCTTGAA-AAAGAACGAAACACAAAGGCTATGGCATATTC 118
Query 121 AACTAAACTTTATCTTCCTCTTAAAACACCATGTTTTGTTCCAAAGACAGTAAGAGCAAA 180
||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 119 AACCAAACTTTGCCTTCCTCTTAAAACGCCATGTTTTGTTCCAAAGACAGTAAGATCAAA 178
Query 181 GACTTTGATGCTTCAACAGAGTCAAGTTCATGTTAAAGTCAAGAAAGCCACAGTTTCACA 240
||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 179 GACTTGGATGCTTCAACAGAGTCAAGTTCATGTTAATGTCAAGCAAGTCACAGTTTCACA 238
Query 241 GCCTCAGCCGATCAGATACTCCACCAAGAACATTGTTTTTGAAGATCCGATACAAGGGAT 300
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 239 GCCTCAGCCGATCAGATACTCCACCAAGAACACTGTTTTTGAAGATCCGACACAAGGGAT 298
Query 301 CATCTGTTACACAGATGATAATGGAGAGGTTATATGTGAAGGATACGATGAAGGTCCTCG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TATCTGTTACACAGATGATAATGGAGAGGTTATATGTGAAGGATACGATGAAGGTCCTCG 358
Query 361 TTGTCCCACACAGAGTCCAATGGTAGCTTCTTACTCAAGAGAGGTGGAGATTCTTGATCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGTCCCACACAGAGTCCAATGGTAGCTTCTTACTCAAGAGAGGTGGAGATTCTTGATCT 418
Query 421 TCTGCAAAGAAGTTATCAGGAGCTGAGCGATTCAAACAAGGATGGTCAAAGACCGATAAT 480
||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||| |
Sbjct 419 TCTGCAAAGAAGTTATCAGAAGCTGAGTAATTCAAAGAAGGATGGTCAAAGACAGATACT 478
Query 481 TGCTTCAGAACAAGAGTTCATGATGATCAAATGGAGCAGCTTTGACTTCCTCTAAATCCC 540
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGCTTCACAACAAGAGTTCACGATGATCAAATGGAGCAGCTTTGACTTCCTCTAAATCCC 538
Query 541 CTTTCTTTTTTCTTCATCGAAACATCAAAATCTGGTTCTCTCTTCAAAAAGGCCTCTTGA 600
||| | | ||| || | |||||||||||||||| ||||||||||
Sbjct 539 -TTT-T---------A---AAA--TC----T--GGTTCTCTCTTCAAAATGGCCTCTTGA 576
Query 601 ATAAGAATGTACAGAAAAAAGGCTATGAAAGAAGCAGCGATTTGCTTCTTTCTTGTTTCT 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 577 ATAAGAATGTACAGAAAAAAGGCTGTGAAAGAAGCAGCGATTTGCTTCTTTCTTGTTTCT 636
Query 661 CTTTTGTAAGAA-ACTTACGTCCAGATTTTGATTTCAATCTTTCACCaaaaaaaaGGGTA 719
|||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 637 CTTTTGTAAGAACAAAAACGTCCAGATTTTGATTTCAATCTTTCACAAAAAAAAAAGGTA 696
Query 720 CGAGGATCCAACATAT--A-A-ACAAAAGAATCTTTCAT 754
|||||||||||||||| | | |||||||||||||||||
Sbjct 697 CGAGGATCCAACATATGTATAGACAAAAGAATCTTTCAT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27905975244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5