BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14290.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478846 jgi|Araly1|478846|fgenesh2_kg.3__1547__AT3G14290.1 1459 0.0
Ahg474517 jgi|Araly1|474517|fgenesh2_kg.1__4471__AT1G53850.2 869 0.0
> Ahg478846 jgi|Araly1|478846|fgenesh2_kg.3__1547__AT3G14290.1
Length=913
Score = 1459 bits (790), Expect = 0.0
Identities = 876/917 (96%), Gaps = 7/917 (1%)
Strand=Plus/Plus
Query 76 ACATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 135
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACATTGAGGTTTATTTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 60
Query 136 TGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 195
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGACAGAGGAGTCAATACCTTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 120
Query 196 TGAAGCTATCAAGCTTGGTTCTACTGCTATTGGTGTAAAGACGAAAGAGGGAGTTGTTCT 255
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 121 TGAGGCTATCAAGCTTGGTTCTACTGCTATTGGCGTAAAGACGAAAGAGGGGGTTGTTCT 180
Query 256 TGCAGTCGAGAAGCGTATTACTTCGCCTTTACTGGAGCCGAGTAGTGTTGAGAAGATTAT 315
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 181 TGCAGTCGAGAAGCGTATTACTTCGCCTTTGCTGGAACCGAGCAGTGTTGAGAAGATTAT 240
Query 316 GGAAATTGATGACCATATAGGTTGTGCTATGAGTGGTCTGATTGCTGACGCGCGAACACT 375
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GGAAATTGATGACCATATAGGTTGTGCCATGAGTGGTCTGATTGCTGACGCGCGAACACT 300
Query 376 TGTTGAGCATGCACGAGTAGAGACCCAGAACCACAGGTTCTCGTATGGTGAGCCAATGAC 435
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 TGTTGAGCATGCACGAGTAGAGACCCAAAACCACAGGTTCTCGTATGGTGAGCCAATGAC 360
Query 436 TGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGA 495
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TGTAGAATCTACAACACAAGCGTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGATGA 420
Query 496 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCTGGGCATGATGAAAATGG 555
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCCGGGCATGATGAAAATGG 480
Query 556 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAATGCAAAGGCAAT 615
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAACGCAAAGGCAAT 540
Query 616 TGGGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 675
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGGTCAGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 600
Query 676 TCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAGGT 735
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 601 TCTTCAAGAAGCTGAAACAATCGCTGTATCTATCCTTAAGCAAGTAATGGAAGAAAAGGT 660
Query 736 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 720
Query 796 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGCCATTCTCTTCCTGTTA 855
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGACATTCTCTTCCTGTTA 780
Query 856 TCTTACCTTGTCTGTTCGGTAATTTATCAGGCTTCTGTCTGCTTCCGGTTCTCTAAACCA 915
|||||||| ||||||| ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 781 TCTTACCTGGTCTGTTGGGTAATTTATCAGGCTTG-GTATGCTTCCGGTTATCTAAACCA 839
Query 916 AAAA--TTAGTTTCGTTTAATCAG-ATAATGGATTTTATCGAGTTGAGTTTTATTGAGCT 972
|| | || |||| ||| | | ||| || ||||||||||||||||||||||||
Sbjct 840 AAGACCTTC-TTTCACA-AATG-GCACAATTAATCCTATCGAGTTGAGTTTTATTGAGCT 896
Query 973 TTCTATCTACAtttttt 989
|||||||||||||||||
Sbjct 897 TTCTATCTACATTTTTT 913
> Ahg474517 jgi|Araly1|474517|fgenesh2_kg.1__4471__AT1G53850.2
Length=974
Score = 869 bits (470), Expect = 0.0
Identities = 640/724 (88%), Gaps = 4/724 (1%)
Strand=Plus/Plus
Query 105 AGAAGAAGATGTTTCTCACTAGGACTGAGTATGACAGAGGAGTCAATACATTTTCTCCTG 164
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 71 AGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTCAACACTTTTTCTCCAG 130
Query 165 AAGGTCGTCTCTTTCAGGTTGAGTATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCTA 224
|||| | || ||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 131 AAGGAAGGCTGTTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAA 190
Query 225 TTGGTGTAAAGACGAAAGAGGGAGTTGTTCTTGCAGTCGAGAAGCGTATTACTTCGCCTT 284
|||| |||||||| ||||| |||||||| || || || ||||||||||| |||||||| |
Sbjct 191 TTGGAGTAAAGACAAAAGAAGGAGTTGTGCTCGCTGTTGAGAAGCGTATCACTTCGCCAT 250
Query 285 TACTGGAGCCGAGTAGTGTTGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCTA 344
| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 251 TGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTA 310
Query 345 TGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGC-ACGAGTAGAGACCCAG 403
|||| ||| | |||||||| ||||||||||||||||||||||| | |||| ||||| ||
Sbjct 311 TGAGCGGTTTAATTGCTGATGCGCGAACACTTGTTGAGCATGCTA-GAGTTGAGACTCAA 369
Query 404 AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCTTTGTGT 463
||||| || |||||||| |||||||| ||||||||||| || ||||||||||| |||||
Sbjct 370 AACCATAGATTCTCGTACGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCGCTGTGT 429
Query 464 GATCTTGCTTTACGGTTTGGTGAAGGAGAGGAAGAGTCAATGTCTCGTCCATTTGGAGTA 523
||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 430 GATCTGGCTTTACGATTTGGTGAAGGAGATGAAGAATCAATGTCTCGTCCATTTGGAGTA 489
Query 524 TCCCTTCTCATTGCTGGGCATGATGAAAATGGACCGAGCCTGTACTACACAGATCCATCG 583
|| |||||||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||
Sbjct 490 TCACTTCTCATTGCTGGTCATGATGAAAACGGACCAAGCTTGTACTACACAGATCCTTCA 549
Query 584 GGAACATTCTGGCAATGCAATGCAAAGGCAATTGGGTCTGGCTCAGAAGGAGCTGATAGT 643
|||||||||||||| |||||||||||||||||||| || || |||||||||||||||||
Sbjct 550 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGGTCAGAAGGAGCTGATAGC 609
Query 644 TCTCTCCAAGAGCAATTCAACAAGGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTA 703
||||| ||||||||||| ||||| ||| | |||| ||||||||||| || || ||||||
Sbjct 610 TCTCTTCAAGAGCAATTTAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 669
Query 704 TCTATCCTAAAGCAAGTAATGGAAGAAAAGGTGACTCCAAACAATGTCGACATTGCCAAA 763
|||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 670 TCTATCCTCAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAATGTGGATATTGCCAAG 729
Query 764 GTCGCACCAGCTTATCACCTCTACACTCCTCAGGAGGTTGAAGCCGTCATCAG-TCGTCT 822
|| |||||||||||||| ||||||||||| || || || ||||| |||||| | ||||||
Sbjct 730 GTAGCACCAGCTTATCATCTCTACACTCCCCAAGAAGTCGAAGCAGTCATC-GCTCGTCT 788
Query 823 ATGA 826
||||
Sbjct 789 ATGA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5