BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14300.1
Length=2907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318218 jgi|Araly1|318218|fgenesh1_pm.C_scaffold_3001234 1509 0.0
> Ahg318218 jgi|Araly1|318218|fgenesh1_pm.C_scaffold_3001234
Length=1767
Score = 1509 bits (817), Expect = 0.0
Identities = 1307/1533 (85%), Gaps = 75/1533 (5%)
Strand=Plus/Plus
Query 1375 CTCAGAACTGTGTGTAATGTAACTAATTACCCTGCTTCTTGTATCTCAAGCATCTCGAAG 1434
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 229 CTCAGAACTGTGTGTAGCGTAACTCGTTACCCTGCTTCTTGTATCTCAAGCATCTCGAAG 288
Query 1435 CTTCCATTATCCAAAACGACGACAGATCCGAAGGTTTTATTCAGGCTTTCGTTACAAGTT 1494
||||||| ||| ||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 289 CTTCCATCGTCC--AAC-ACGACGGATCCGGAGGTTTTATTCAGGCTTTCGTTACAAGTT 345
Query 1495 -ACATTCGACGAACTCAATTCCATCGTTGGTTTACCGAAGAAACTCGCGGAAGAGACTAA 1553
| |||||||||||||||| |||| | |||||||||||| |||||||||||||| |
Sbjct 346 GTC-GTCGACGAACTCAATTCGATCGCCGATTTACCGAAGAAGCTCGCGGAAGAGACGGA 404
Query 1554 TGATGAGGGACTCAAATCGGCGCTTAGTGTTTGCGCAGATGTGTTCGACCTCGCGGTTGA 1613
|||||| || |||||||||||||| ||||||||| |||| |||||||| ||| ||||
Sbjct 405 CGATGAGAGAATCAAATCGGCGCTTGGTGTTTGCGGAGATCTGTTCGACGAAGCGATTGA 464
Query 1614 TTC-AGTTAACGATACTATTTCCTCCTTGGATGAAGTAATTAGTGGCGGGAAGAAGAATT 1672
|| |||||||| ||| ||||| || | | |||| || ||| ||||||||||| ||
Sbjct 465 -TCGTGTTAACGAAACTGTTTCCGCCAT-G--GAAG---TTGGTGACGGGAAGAAGATTT 517
Query 1673 TGAATTCGTCA-ACGATCGGCGATCT-CATAACGTGGCTTAGCTCCGCCGTAACAGAT-A 1729
|||||||| | ||||||| |||||| || ||| ||||||||| ||||||| |||||| |
Sbjct 518 TGAATTCG-AAGACGATCGACGATCTCCA-AACTTGGCTTAGCGCCGCCGTGACAGATCA 575
Query 1730 TCGGGACGTGTGGCGACACGCTTGATG-----A---AG---ATAA-C---TA--C-AACT 1771
|| |||||| |||| ||||||||| | || | || | || | || |
Sbjct 576 -CGACACGTGTCTCGACGCGCTTGATGAACTCAGCCAGAACAAAACCGAGTACGCGAATT 634
Query 1772 CACCAATCCCACAGAAGCTTAAATCCGCCATGGTTAATTCCACAGAGTTCACAAGCAACA 1831
|| ||||| ||| |||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 635 CAGCAATCTCACTGAAGCTCAAATCCGCCATGGTTAATTCAACCGAGTTCACAAGCAACA 694
Query 1832 GCTTAGCCATCGTCGCGCAGGTTCTCAAAAAACCAAGC-AAGTCTAGGATCCCGGTTCAG 1890
||||||| ||||||||| || ||||| | |||| | || |||| || ||||
Sbjct 695 GCTTAGCGATCGTCGCGAAGATTCTCTCTACTTTAAGCGATTTC-GGGATTTCGATTCAC 753
Query 1891 GGGAGACGGCTACTTAACTCGAATTCGTTTCCAAATTGGGTTAGA-CCAGGAGTGAGGCG 1949
|||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 754 CGGAGACGGCTTCTAAACTCGAATTCGTTTCCAAATTGGGTTA-ACCCAGGGGTGAGGCG 812
Query 1950 GTTACTTCAAGCGAAGAACTTAACGCCTCATGTTACGGTGGCGGCGGATGGCTCCGGCGA 2009
||||||||| |||||||| ||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 813 GTTACTTCAGGCGAAGAATTTAACTCCTAATGTCACGGTGGCGGCGGATGGCTCCGGCGA 872
Query 2010 TGTGAGGACGGTGAATGAAGCGGTTTGGAGAG--TTCCGAAGAAGGGGAAAACGATGTTT 2067
|||||||||||||||||||||||| |||||| |||||||||| |||| ||||||||||
Sbjct 873 TGTGAGGACGGTGAATGAAGCGGT--GGAGAGAATTCCGAAGAATGGGACAACGATGTTT 930
Query 2068 GTTATATACGTGAAAGCAGGTACGTATGTGGAGAATGTCCTTATGAAAAAG-GATAAATG 2126
||||||||||||||||| |||||||||||||||||||| ||| || | ||| | ||||||
Sbjct 931 GTTATATACGTGAAAGCTGGTACGTATGTGGAGAATGTGCTTTTGGATAAGAG-TAAATG 989
Query 2127 GAATGTGTTTATCTACGGCGACGGCAGGGATAAGACCATTATTTCCGGTAGCACTAAC-A 2185
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 990 GAATGTTTTTATCTACGGCGACGGCAAGGATAAGACCATTATTTCCGGTAGCAAGAACTA 1049
Query 2186 TGGTCGACGGGGT-TCGTACTTTCAATACCTCCACGTTTGCAACTGAAGGCAAAGGATTT 2244
| |||||||| || ||||||||| || | |||||||||||| ||||||||||||||
Sbjct 1050 CG-TCGACGGGACATC-TACTTTCAAAACGGCGACGTTTGCAACTCAAGGCAAAGGATTT 1107
Query 2245 ATGATGAAGGACATGGGAATCATAAACACCGCCGGGCCAGAGAAGCATCAAGCGGTAGCA 2304
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1108 ATGATGAAGGACATCGGAATCATAAACACCGCCGGACCAGAGAAGCATCAAGCGGTGGCG 1167
Query 2305 TTCCGATCAG-ATTCCGATCGGTCAGTCTACTATCGATGTTCATTCGACGGCTACCAAGA 2363
|||||||||| || ||||| ||||||||||||| ||| |||||||| || | ||||||
Sbjct 1168 TTCCGATCAGGAT-CCGATTTATCAGTCTACTATCAATGCTCATTCGATGGTTTCCAAGA 1226
Query 2364 TACTCTTTATACTCACTCAAATCGACAATACTATCGTAACTGTGACGTCACCGGAACAGT 2423
|||||||||| |||| |||||||| |||| ||| || ||||| |||||||||||||||||
Sbjct 1227 TACTCTTTATCCTCATTCAAATCGTCAATTCTACCGCAACTGCGACGTCACCGGAACAGT 1286
Query 2424 TGATTTCATCTTCGGAGCTGGCA-CAGTCGTCTTCCAAGGCTGCAGCATCCGTCCGCGTC 2482
|||||||||||||||||| | || | ||||||||||||||||||| |||| | |||||||
Sbjct 1287 TGATTTCATCTTCGGAGCCG-CAACCGTCGTCTTCCAAGGCTGCAACATCAGGCCGCGTC 1345
Query 2483 AGCCGCTTCCGAATCAGTTCAACACAATCACCGCTGAAGGTACACAAG-AG--GCCAATC 2539
|||||||||||||||||| |||||||||||| |||||||||| | ||| | || | ||
Sbjct 1346 AGCCGCTTCCGAATCAGTACAACACAATCACTGCTGAAGGTAAA-AAGGATAAGC-A-TC 1402
Query 2540 AGAACACGGGAATATCGATCCACCAATGCACAATCTCTCCCAACGGAAATGTAACTGCTA 2599
||||| | |||| |||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1403 AGAACTCCGGAACCTCGATCCAACGATGCACAATCTCTGCCAACGGAAATGTAACTGCTC 1462
Query 2600 CGACGTATCTTGGCCGTCCGTGGAAATTGTTTTCGAA-GACGGTTATTATGCAATCGGTG 2658
|||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||
Sbjct 1463 CGACGTATCTTGGCCGTCCGTGGAAAGAGTTTTC-AACGACGGTGATTATGCAATCGGTG 1521
Query 2659 ATTGGGTCGTTCGTGAATCCCGCTGGGTGGATTGCGTGGAATTCGACT-TATGACCCGCC 2717
||||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 1522 ATTGGGTCGGTCGTGAATCCCGTTGGGTGGATTGCGTGGAATTCGACTCT-TGACCCGCC 1580
Query 2718 TCC-ACGTACTATAT-TCTATAGAGAGTACAAGAATTCAGGTCCTGGGTCGGATCT-ATC 2774
||| | ||||||| | ||||| |||||||||||||||| ||||||||||||||| | | |
Sbjct 1581 TCCGA-GTACTAT-TCTCTATGGAGAGTACAAGAATTCGGGTCCTGGGTCGGATGTGACC 1638
Query 2775 CAAGAGAGTTAAATGGGCTGGGTATAAGCCCATT-TCGTCTGATGATGAGGCTGCAAGGT 2833
|| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||| |
Sbjct 1639 CA-GAGAGTTAAATGGGCTGGGTATAAGCCCATTAT-GTCTGATGATGAGGCAGGAAGAT 1696
Query 2834 TTACGGTTAAGTAT-TTTCTCCGAGGGGATGAT 2865
|||||||| | ||||||||||||| ||||
Sbjct 1697 TTACGGTTGCC-ACGTTTCTCCGAGGGGCTGAT 1728
Score = 870 bits (471), Expect = 0.0
Identities = 678/776 (87%), Gaps = 21/776 (3%)
Strand=Plus/Plus
Query 1 ATGGATACTGTCAAGTCAATCAACAAAGGCTATGGCAAAGTTGACGAAACTCAAGATTTG 60
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1 ATGGATACTGTCAAGTCAATCAACAAAGGCTATGGCAAAGTAGACGAAGCTGAAGATTTG 60
Query 61 GCGTTGAAGAGAAAGACGAGAAAGCGTTTGTATCAAATAGGCATTTCCGTGGCAGTTCTG 120
|||||||||||||||||| | ||||| |||| || |||||| ||||||||| ||||||
Sbjct 61 GCGTTGAAGAGAAAGACGCGGAAGCGGTTGTTTCTCATAGGCGTTTCCGTGGTGGTTCTG 120
Query 121 GTGGCGATTATCATCAGCTCCACCGTCACCATCGCAATTCACAGCCGGAAAGGCAATTCA 180
||| ||||| ||||||||||| |||| || |||| |||| ||||||||| |||||||
Sbjct 121 GTGTCGATTCTCATCAGCTCCGTCGTCGCCGTCGCTGTTCATAGCCGGAAAAACAATTCA 180
Query 181 CCACATCCAACACCGAGTTCAGTCCCCGAGTTGACTCCCGCCGCTTCACTCAAAACTGTG 240
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 181 CCAAATCCAACACCGAGTTCAGTCAACGAGTTGACTCCCGCCGCTTCACTCAGAACTGTG 240
Query 241 TGTAGCGTAACTAATTACCCTGTTTCTTGCT-TCTCAAGCATCTCGAAGCTTCCATTGTC 299
|||||||||||| |||||||| |||||| | |||||||||||||||||||||||| |||
Sbjct 241 TGTAGCGTAACTCGTTACCCTGCTTCTTG-TATCTCAAGCATCTCGAAGCTTCCATCGTC 299
Query 300 CAACACGACGGATCCGGAGGTTATATTCAGGCTTTCTTTACAAGTTGTCATTGACGAACT 359
|||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||
Sbjct 300 CAACACGACGGATCCGGAGGTTTTATTCAGGCTTTCGTTACAAGTTGTCGTCGACGAACT 359
Query 360 CAACTCAATCGTTGAGTTACCGAAGAAGCTCGCTGAAGAGACGGACGATGAGGGACTCAA 419
||| || |||| || ||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 360 CAATTCGATCGCCGATTTACCGAAGAAGCTCGCGGAAGAGACGGACGATGAGAGAATCAA 419
Query 420 ATCGGCGCTTAGTGTTTGCGAACATCTGTTAGACCTCGCTATTGATCGTGTTAACGAAAC 479
|||||||||| ||||||||| | ||||||| ||| || ||||||||||||||||||||
Sbjct 420 ATCGGCGCTTGGTGTTTGCGGAGATCTGTTCGACGAAGCGATTGATCGTGTTAACGAAAC 479
Query 480 TGTTTCCGCCATGGAAGTTGTTGACGGGAAGAAGATTTTGAATGCTGC-GACCATTGACG 538
|||||||||||||||||||| |||||||||||||||||||||| | | ||| || ||||
Sbjct 480 TGTTTCCGCCATGGAAGTTGGTGACGGGAAGAAGATTTTGAATTC-GAAGACGATCGACG 538
Query 539 ATCTCCTTACTTGGCTCAGCGCCGCTGTGACATACCACGGA-ACGTGTCTCGACGCGCTT 597
|||||| |||||||| |||||||| |||||| | |||| | ||||||||||||||||||
Sbjct 539 ATCTCCAAACTTGGCTTAGCGCCGCCGTGACAGATCACG-ACACGTGTCTCGACGCGCTT 597
Query 598 GATGAAATCAGCCA---CA---C-GA--A------TTCAGCAATCCCACTGAAGCTTAAA 642
|||||| ||||||| || | || | |||||||||| |||||||||| |||
Sbjct 598 GATGAACTCAGCCAGAACAAAACCGAGTACGCGAATTCAGCAATCTCACTGAAGCTCAAA 657
Query 643 TCTGGCATGGTTAACTCGACCGAGTTCACAAGTAACAGCTTAGCGATCGTTGCGAAGATT 702
|| | ||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 658 TCCGCCATGGTTAATTCAACCGAGTTCACAAGCAACAGCTTAGCGATCGTCGCGAAGATT 717
Query 703 CTCTCTACAATAAGCGATTTTGGGATCCCGATTCACGGGAGACGGCTTCTAAACTC 758
|||||||| |||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 718 CTCTCTACTTTAAGCGATTTCGGGATTTCGATTCACCGGAGACGGCTTCTAAACTC 773
Score = 691 bits (374), Expect = 0.0
Identities = 489/545 (90%), Gaps = 5/545 (1%)
Strand=Plus/Plus
Query 760 TCACCACATGCAACACCAATTTCAGTCCCCAAGTTGACTCCCGCCGCTTCACTCAGAAAT 819
|||||| || ||||||| | ||||||| | ||||||||||||||||||||||||||| |
Sbjct 178 TCACCAAATCCAACACCGAGTTCAGTCAACGAGTTGACTCCCGCCGCTTCACTCAGAACT 237
Query 820 GTATGCAGCGTAACTCGTTACCCTGCTTCTTGTGTCTCAAGCATCTCAAAGCTTCCATCG 879
|| || ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 238 GTGTGTAGCGTAACTCGTTACCCTGCTTCTTGTATCTCAAGCATCTCGAAGCTTCCATCG 297
Query 880 TCTAACACGACGGATCCGGAGGCTTTATTCAGGCTTTCGTTACAAGTTGTCATCAACGAA 939
|| ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 298 TCCAACACGACGGATCCGGAGGTTTTATTCAGGCTTTCGTTACAAGTTGTCGTCGACGAA 357
Query 940 CTCAATTCGATCGCCGGTTTACCGAAGAAGCTCGCCGAAGAGACGGACGATGAGAGACTC 999
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 358 CTCAATTCGATCGCCGATTTACCGAAGAAGCTCGCGGAAGAGACGGACGATGAGAGAATC 417
Query 1000 AAATCGTCTCTTAGTGTTTGTGGAGATGTGTTCAACGACGCGATTGATA-TAGTCAACGA 1058
|||||| | ||| ||||||| |||||| ||||| |||| ||||||||| | || |||||
Sbjct 418 AAATCGGCGCTTGGTGTTTGCGGAGATCTGTTCGACGAAGCGATTGATCGT-GTTAACGA 476
Query 1059 TACTATTTCCACCATGGAAGAAGTTGGTGACGGGAAGAAGATTTTGAAGTCGTCGACCAT 1118
||| ||||| ||||||||| ||||||||||||||||||||||||| ||| ||| ||
Sbjct 477 AACTGTTTCCGCCATGGAAG---TTGGTGACGGGAAGAAGATTTTGAATTCGAAGACGAT 533
Query 1119 CGACGAGATTCAAACTTGGCTTAGCGCCGCCGTAACAGATCACGACACGTGTCTCGACGC 1178
|||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 534 CGACGATCTCCAAACTTGGCTTAGCGCCGCCGTGACAGATCACGACACGTGTCTCGACGC 593
Query 1179 ACTTGATGAACTCAGCCAGAACAAAACAGAGTACGCGAATTCACCAATCTCACTAAAGCT 1238
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 594 GCTTGATGAACTCAGCCAGAACAAAACCGAGTACGCGAATTCAGCAATCTCACTGAAGCT 653
Query 1239 TAAATCCGCCATGGTCAATTCCAGAAAGTTCACAAGCAACAGCTTAGCGATCATCGCGAA 1298
|||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||
Sbjct 654 CAAATCCGCCATGGTTAATTCAACCGAGTTCACAAGCAACAGCTTAGCGATCGTCGCGAA 713
Query 1299 GTTTC 1303
| |||
Sbjct 714 GATTC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109737995845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5