BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14320.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg478848 jgi|Araly1|478848|fgenesh2_kg.3__1549__AT3G14320.1 518 2e-146 > Ahg478848 jgi|Araly1|478848|fgenesh2_kg.3__1549__AT3G14320.1 Length=579 Score = 518 bits (280), Expect = 2e-146 Identities = 390/439 (89%), Gaps = 24/439 (5%) Strand=Plus/Plus Query 1 ATGAAAGAATCCGATGCTGTCATTCTAATACATCTCGGAATAAATATTGTCTTCGCTTTC 60 ||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGAAAGAATCAGATGCCGTCAATCTAATACATCTCGGAATAAATATTGGCTTCGCTTTG 60 Query 61 TTTTTCTTTGGGATTTCGGCCGTGGTAGTGAGTTG-CATCATTAAATGTTATA---ATAC 116 ||||||||| |||||||| |||||||||||||||| | | ||||||||||||| |||| Sbjct 61 TTTTTCTTTAGGATTTCGTCCGTGGTAGTGAGTTGTC-TTATTAAATGTTATAGTTATAC 119 Query 117 TCATGATGATG---ATC---A---TGATCATG---ACAACAACAACGATGGTCATGTCAG 164 ||||||||||| ||| | |||||||| ||||||||||||||| ||||||||| Sbjct 120 TCATGATGATGATCATCATGATCCTGATCATGACAACAACAACAACGATGATCATGTCAG 179 Query 165 CATCACCATCAAGG-AACGTGTCGGTATAAAGCCTTACGTTCTACGATCGATCCCTATCG 223 |||||||||| ||| || |||| || |||||||| || ||||| ||||||||||||||| Sbjct 180 CATCACCATC-AGGCAATGTGTAGGAATAAAGCCGTATGTTCTCCGATCGATCCCTATCA 238 Query 224 TAGACTTCAA-TACCAAAGACTTC-AA-A-TACGTCCTCGAATGCGTCGTTTGTCTCTCG 279 |||||||||| | ||||||||||| || | ||||||||||||||||||||||||||||| Sbjct 239 TAGACTTCAACT-CCAAAGACTTCAAAGACGACGTCCTCGAATGCGTCGTTTGTCTCTCG 297 Query 280 GAGCTAGCCGATGGAGACAAAGCTAGGGTTTTGCCGAGCTGTGATCACTGGTTTCACGTT 339 ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 298 GAGCTAGCCGACAGAGACAAAGCTAGGGTTTTGCCGAGCTGCGATCACTTGTTTCACGTT 357 Query 340 GAATGTATAGACTCCTGGCTGCAATCAAACTCCACTTGTCCTATATGTAGAAAGAGAGTT 399 |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 358 GAATGTATCGACTCGTGGCTTCAATCAAACTCCACTTGTCCTATATGTAGAAAGAGAGTT 417 Query 400 TGTTTGAAGCAGTCAAGAA 418 ||||||||||||||| ||| Sbjct 418 TGTTTGAAGCAGTCACGAA 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5