BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14320.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478848 jgi|Araly1|478848|fgenesh2_kg.3__1549__AT3G14320.1         518    2e-146


> Ahg478848 jgi|Araly1|478848|fgenesh2_kg.3__1549__AT3G14320.1
Length=579

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 390/439 (89%), Gaps = 24/439 (5%)
 Strand=Plus/Plus

Query  1    ATGAAAGAATCCGATGCTGTCATTCTAATACATCTCGGAATAAATATTGTCTTCGCTTTC  60
            ||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| 
Sbjct  1    ATGAAAGAATCAGATGCCGTCAATCTAATACATCTCGGAATAAATATTGGCTTCGCTTTG  60

Query  61   TTTTTCTTTGGGATTTCGGCCGTGGTAGTGAGTTG-CATCATTAAATGTTATA---ATAC  116
            ||||||||| |||||||| |||||||||||||||| | | |||||||||||||   ||||
Sbjct  61   TTTTTCTTTAGGATTTCGTCCGTGGTAGTGAGTTGTC-TTATTAAATGTTATAGTTATAC  119

Query  117  TCATGATGATG---ATC---A---TGATCATG---ACAACAACAACGATGGTCATGTCAG  164
            |||||||||||   |||   |   ||||||||   ||||||||||||||| |||||||||
Sbjct  120  TCATGATGATGATCATCATGATCCTGATCATGACAACAACAACAACGATGATCATGTCAG  179

Query  165  CATCACCATCAAGG-AACGTGTCGGTATAAAGCCTTACGTTCTACGATCGATCCCTATCG  223
            |||||||||| ||| || |||| || |||||||| || ||||| ||||||||||||||| 
Sbjct  180  CATCACCATC-AGGCAATGTGTAGGAATAAAGCCGTATGTTCTCCGATCGATCCCTATCA  238

Query  224  TAGACTTCAA-TACCAAAGACTTC-AA-A-TACGTCCTCGAATGCGTCGTTTGTCTCTCG  279
            |||||||||| | ||||||||||| || |  |||||||||||||||||||||||||||||
Sbjct  239  TAGACTTCAACT-CCAAAGACTTCAAAGACGACGTCCTCGAATGCGTCGTTTGTCTCTCG  297

Query  280  GAGCTAGCCGATGGAGACAAAGCTAGGGTTTTGCCGAGCTGTGATCACTGGTTTCACGTT  339
            |||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  298  GAGCTAGCCGACAGAGACAAAGCTAGGGTTTTGCCGAGCTGCGATCACTTGTTTCACGTT  357

Query  340  GAATGTATAGACTCCTGGCTGCAATCAAACTCCACTTGTCCTATATGTAGAAAGAGAGTT  399
            |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  358  GAATGTATCGACTCGTGGCTTCAATCAAACTCCACTTGTCCTATATGTAGAAAGAGAGTT  417

Query  400  TGTTTGAAGCAGTCAAGAA  418
            ||||||||||||||| |||
Sbjct  418  TGTTTGAAGCAGTCACGAA  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5