BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14330.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929218 jgi|Araly1|929218|scaffold_301675.1 2139 0.0
> Ahg929218 jgi|Araly1|929218|scaffold_301675.1
Length=2114
Score = 2139 bits (1158), Expect = 0.0
Identities = 1306/1380 (95%), Gaps = 0/1380 (0%)
Strand=Plus/Plus
Query 204 ATGTTATCACTCCACAAGCTTATCTTACTCCACTGGGGTCTCAGAGTATCAACCATGCTA 263
||||| ||||| |||||||||||||||||||| || ||||||| | ||||||||||||||
Sbjct 203 ATGTTGTCACTACACAAGCTTATCTTACTCCATTGAGGTCTCAAACTATCAACCATGCTA 262
Query 264 AATTTTTACAAATCCCATGGAGACAATTTGTCTTCACAAAGCCTTTAGGTCTCTCTAAAT 323
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 263 AATTCTTACAAATCCCATGGAGACAATTTGTCTTCAAAAAGCCTTTAGGTCTCTGTAAAT 322
Query 324 CAACCAAACTCGACGAAGCCGTGACATTGATAGAGAATTCATCATCCTCGCCGTCCAATC 383
|||||||||| |||||||||||||| ||||||||||| |||||| |||| ||||||||||
Sbjct 323 CAACCAAACTAGACGAAGCCGTGACCTTGATAGAGAAGTCATCAACCTCACCGTCCAATC 382
Query 384 TCTCCACTCCCGAAGCTTACACAGACCTTCTTCATGCTTGTATCTCCGCTAAATCACTCC 443
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 383 TCTCTACTCCCGAAGCTTACACAGACCTACTTCATGCTTGCATCTCCGCTAAATCGCTTC 442
Query 444 ACCATGGTATAAAAATATGTTCTTTGATTCTCAACAATCCTAGTCTCCGTCACAACCCCA 503
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 443 ACCATGGTATAAAAATCTGTTCTTTGGTTCTCAACAATCCTAGTCTCCGTCACGATCCCA 502
Query 504 AATTGCTAAGCAAGCTCATTACCCTATTCTCGGTTTGTCGCCGATTGGATCTTGCTCGGA 563
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 503 AATTGCTTAGCAAGCTCATTACCCTTTTCTCGGTTTGTCGCCGATTGGATCTCGCTCGGA 562
Query 564 AAATCTTTGACGATGTAACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCTATGG 623
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 563 AAATCTTCGACGATGTCACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCGATGG 622
Query 624 CGATTGGGTATTCTAGAAACGGGTCACCAAGAGACGCTTTGATCGTCTATGTGGATATGT 683
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 623 CGATTGGGTATTCTAGAAACGGGTCACCAAGGGACGCTTTGATCGTGTATGTGGATATGT 682
Query 684 TGTGTAGCTTCATTGAGCCTGGGAATTTTTCGATATCCGTGGCGTTGAAAGCGTGCGTGG 743
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 683 TGTGTAGTTTCATTGAGCCTGGGAATTTTTCGATATCTGTGGCGTTAAAAGCTTGCGTGG 742
Query 744 ATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGCCCAGATTGTGAAACGAAAGGAGA 803
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 743 ATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGGCCAGATTGTGAAACGGAAGGGGA 802
Query 804 AGGTTGACCAAGTAGTGTATAATGTGCTCTTGAAGCTTTATATGGAAAGTGGCTTATTTG 863
||||||| ||||| |||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct 803 AGGTTGATCAAGTGGTGTATAATGTGCTCTTGAAGCTTTACATGGAACGTGGCTCATTTG 862
Query 864 ATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATGTTGTTACTTGGAATTCTT 923
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 863 ATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATATTGTTACTTGGAATTCTT 922
Query 924 TAATTTCGGTACTCAGTAAGAAAGTTCGGGTTCATGAGATGTTTAATCTGTTCAGGAAGA 983
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 923 TAATTTCGGTACTCAGCAAGAAAGTTCGGGTTCATGAGATGATTAATTTGTTCAGAAAGA 982
Query 984 TGCAGGAAGAGATGATCGGGTTTAGTTGGGCGACGTTGACGACAATATTACCCGCTTGTT 1043
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 983 TGCAGGAAGAGATGATTGGGTTTAGTTGGGCGACTTTGACGACAATCTTACCCGCTTGTT 1042
Query 1044 CACGTGTCGCTGCTCTTCTCACCGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAG 1103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1043 CACGTGTCGCTGCTCTTCTCACGGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAG 1102
Query 1104 AGAAACCTGATGTTCCATTGCTTAATTCATTGATGGATATGTATGGGAAATGTGGAGAGG 1163
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1103 AGAAACCTGATGTTCCGTTGCTTAATTCATTGATGGATATGTATGGGAAGTGTGGAGAGG 1162
Query 1164 TTGAGTATTCTCGGAGAGTCTTTGATGTGATGTTAACTAAGGATTTGGCTTCATGGAACA 1223
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1163 TTGAGTATTCTCGGAGAGTCTTTGATGGGATGTTAACTAAGGATTTGACTTCATGGAACA 1222
Query 1224 TAATGCTAAACTGTTATGCAATCAACGGAAATATTGAAGAAGTGATAAATCTGTTTGAAT 1283
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1223 CGATTCTAAATTGTTATGCAATCAACGGAAATATCGAAGAAGTGATAAATCTGTTTGAAT 1282
Query 1284 GGATGATAGAGTCAGGCGTTGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCTGGGT 1343
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1283 GGATGATAGAGTCAGGCGTCGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCCGGGT 1342
Query 1344 GTAGCGATACAGGGCTTACGGAATATGGTCTAAGTTTGTTTGAACGCATGAAAACGGAGT 1403
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| || |
Sbjct 1343 GTAGCGATACAGGGCTAACGGAATACGGTATAAGTTTGTTTGAACGCATGAAAACTGAAT 1402
Query 1404 TCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGGCGAGCTG 1463
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1403 TCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGCCGAGCTG 1462
Query 1464 GTAAGATCAAAGAAGCAGTGAAGGTGATAGAAACAATGCCATTTAAGCCAAGTGCGTCCA 1523
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1463 GTAAGATCGAAGAAGCAGTCAAGGTAATAGAAACAATGCCATTTAAGCCAAGTGCATCCA 1522
Query 1524 TTTGGGGATCACTGCTCAACTCTTGCAGGCTTCATGGGAATGTTTCAGTGGGAGAGATTG 1583
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1523 TTTGGGGATCACTGCTCAACTCTTGCAGGCTCCATGGGAATGTTTCAGTGGGAGAGATTG 1582
Score = 785 bits (425), Expect = 0.0
Identities = 484/513 (94%), Gaps = 1/513 (0%)
Strand=Plus/Plus
Query 1623 GGAACTACGTTATGGTTTCTAACATATAT-GCTGATGCAAAGATGTGGGACAATGTGGAT 1681
||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1582 GGAACTATGTTATGGCTTCTAACATATATAGCTGAAGCAAAGATGTGGGACAATGTGGAT 1641
Query 1682 AAGATTCGAGAGATGATGAAACAAAGAGGGGTCAAAAAGGAAGCTGGTTGCAGTTGGGTA 1741
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1642 AAGATTCGAGAGATGATGAAACAAAGAGGGATCAAAAAGGAAGCTGGTTGCAGTTGGGTA 1701
Query 1742 CAGGTTAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTATGAGTTTCGTAATTCT 1801
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1702 CAGGTGAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTACGAGTTTCGTAATTCG 1761
Query 1802 GATGAGTATAAGAAAGTATGGACAGAACTACAAGAAGCAATTGAAAAATCCGGTTATTCG 1861
|||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1762 GATGAGTATAAGCAAGTATGGACAGAACTACAGGAAGCAATTGAAAATTCCGGTTATTCT 1821
Query 1862 CCTAATACGAGTGTGGTGCTTCATGATGTTGATGAAGAAACCAAAGCAAATTGGGTTTGT 1921
||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1822 CCTGATACGAGCGTGGTGCTTCATGATGTTGATGAAGAAACTAAGGCAAATTGGGTTTGT 1881
Query 1922 GGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATCCACACAGGTGAAGGGGTTCCA 1981
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1882 GGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATTCACACAGGTGAAGGGGTTCCA 1941
Query 1982 ATTAGGATTACCAAGAATCTCAGAGTATGTGCAGACTGTCATTCATGGATGAAGATTGTG 2041
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1942 ATTAGGATTACGAAGAATCTCAGAGTATGTGCAGACTGCCATTCATGGATGAAGATTGTA 2001
Query 2042 TCACAAGTAACTAGGAGAGTCATAGTCCTCAGAGACACAAAACGATTCCACCATTTCGTC 2101
|| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2002 TCGCAAGTAACTGGGAGAGTTATAGTCCTCAGAGACACCAAACGATTCCACCATTTCGTT 2061
Query 2102 GACGGAATCTGCTCATGTAAAGACTACTGGTGA 2134
| ||| || |||||||||||||| |||||||||
Sbjct 2062 GCCGGCATTTGCTCATGTAAAGATTACTGGTGA 2094
Score = 159 bits (86), Expect = 6e-38
Identities = 104/113 (92%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1 AATGATGATCGGGAAGTTGTGGAGATCTGTGGGAACCGTCGGAAAGTTTGATGGTCGTTA 60
|||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 21 AATGATGATCGGAAAATTGTGTAGATCTGTGGGAACCGTCGGAAAGTGTGATGGTCGGCA 80
Query 61 CGACGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATG 113
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTATGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATG 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5