BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14330.1 Length=2134 Score E Sequences producing significant alignments: (Bits) Value Ahg929218 jgi|Araly1|929218|scaffold_301675.1 2139 0.0 > Ahg929218 jgi|Araly1|929218|scaffold_301675.1 Length=2114 Score = 2139 bits (1158), Expect = 0.0 Identities = 1306/1380 (95%), Gaps = 0/1380 (0%) Strand=Plus/Plus Query 204 ATGTTATCACTCCACAAGCTTATCTTACTCCACTGGGGTCTCAGAGTATCAACCATGCTA 263 ||||| ||||| |||||||||||||||||||| || ||||||| | |||||||||||||| Sbjct 203 ATGTTGTCACTACACAAGCTTATCTTACTCCATTGAGGTCTCAAACTATCAACCATGCTA 262 Query 264 AATTTTTACAAATCCCATGGAGACAATTTGTCTTCACAAAGCCTTTAGGTCTCTCTAAAT 323 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 263 AATTCTTACAAATCCCATGGAGACAATTTGTCTTCAAAAAGCCTTTAGGTCTCTGTAAAT 322 Query 324 CAACCAAACTCGACGAAGCCGTGACATTGATAGAGAATTCATCATCCTCGCCGTCCAATC 383 |||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||| Sbjct 323 CAACCAAACTAGACGAAGCCGTGACCTTGATAGAGAAGTCATCAACCTCACCGTCCAATC 382 Query 384 TCTCCACTCCCGAAGCTTACACAGACCTTCTTCATGCTTGTATCTCCGCTAAATCACTCC 443 |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| || | Sbjct 383 TCTCTACTCCCGAAGCTTACACAGACCTACTTCATGCTTGCATCTCCGCTAAATCGCTTC 442 Query 444 ACCATGGTATAAAAATATGTTCTTTGATTCTCAACAATCCTAGTCTCCGTCACAACCCCA 503 |||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||| Sbjct 443 ACCATGGTATAAAAATCTGTTCTTTGGTTCTCAACAATCCTAGTCTCCGTCACGATCCCA 502 Query 504 AATTGCTAAGCAAGCTCATTACCCTATTCTCGGTTTGTCGCCGATTGGATCTTGCTCGGA 563 ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 503 AATTGCTTAGCAAGCTCATTACCCTTTTCTCGGTTTGTCGCCGATTGGATCTCGCTCGGA 562 Query 564 AAATCTTTGACGATGTAACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCTATGG 623 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 563 AAATCTTCGACGATGTCACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCGATGG 622 Query 624 CGATTGGGTATTCTAGAAACGGGTCACCAAGAGACGCTTTGATCGTCTATGTGGATATGT 683 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 623 CGATTGGGTATTCTAGAAACGGGTCACCAAGGGACGCTTTGATCGTGTATGTGGATATGT 682 Query 684 TGTGTAGCTTCATTGAGCCTGGGAATTTTTCGATATCCGTGGCGTTGAAAGCGTGCGTGG 743 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 683 TGTGTAGTTTCATTGAGCCTGGGAATTTTTCGATATCTGTGGCGTTAAAAGCTTGCGTGG 742 Query 744 ATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGCCCAGATTGTGAAACGAAAGGAGA 803 |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 743 ATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGGCCAGATTGTGAAACGGAAGGGGA 802 Query 804 AGGTTGACCAAGTAGTGTATAATGTGCTCTTGAAGCTTTATATGGAAAGTGGCTTATTTG 863 ||||||| ||||| |||||||||||||||||||||||||| |||||| |||||| ||||| Sbjct 803 AGGTTGATCAAGTGGTGTATAATGTGCTCTTGAAGCTTTACATGGAACGTGGCTCATTTG 862 Query 864 ATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATGTTGTTACTTGGAATTCTT 923 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 863 ATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATATTGTTACTTGGAATTCTT 922 Query 924 TAATTTCGGTACTCAGTAAGAAAGTTCGGGTTCATGAGATGTTTAATCTGTTCAGGAAGA 983 |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||| Sbjct 923 TAATTTCGGTACTCAGCAAGAAAGTTCGGGTTCATGAGATGATTAATTTGTTCAGAAAGA 982 Query 984 TGCAGGAAGAGATGATCGGGTTTAGTTGGGCGACGTTGACGACAATATTACCCGCTTGTT 1043 |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 983 TGCAGGAAGAGATGATTGGGTTTAGTTGGGCGACTTTGACGACAATCTTACCCGCTTGTT 1042 Query 1044 CACGTGTCGCTGCTCTTCTCACCGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAG 1103 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1043 CACGTGTCGCTGCTCTTCTCACGGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAG 1102 Query 1104 AGAAACCTGATGTTCCATTGCTTAATTCATTGATGGATATGTATGGGAAATGTGGAGAGG 1163 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1103 AGAAACCTGATGTTCCGTTGCTTAATTCATTGATGGATATGTATGGGAAGTGTGGAGAGG 1162 Query 1164 TTGAGTATTCTCGGAGAGTCTTTGATGTGATGTTAACTAAGGATTTGGCTTCATGGAACA 1223 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 1163 TTGAGTATTCTCGGAGAGTCTTTGATGGGATGTTAACTAAGGATTTGACTTCATGGAACA 1222 Query 1224 TAATGCTAAACTGTTATGCAATCAACGGAAATATTGAAGAAGTGATAAATCTGTTTGAAT 1283 || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1223 CGATTCTAAATTGTTATGCAATCAACGGAAATATCGAAGAAGTGATAAATCTGTTTGAAT 1282 Query 1284 GGATGATAGAGTCAGGCGTTGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCTGGGT 1343 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1283 GGATGATAGAGTCAGGCGTCGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCCGGGT 1342 Query 1344 GTAGCGATACAGGGCTTACGGAATATGGTCTAAGTTTGTTTGAACGCATGAAAACGGAGT 1403 |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| || | Sbjct 1343 GTAGCGATACAGGGCTAACGGAATACGGTATAAGTTTGTTTGAACGCATGAAAACTGAAT 1402 Query 1404 TCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGGCGAGCTG 1463 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1403 TCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGCCGAGCTG 1462 Query 1464 GTAAGATCAAAGAAGCAGTGAAGGTGATAGAAACAATGCCATTTAAGCCAAGTGCGTCCA 1523 |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 1463 GTAAGATCGAAGAAGCAGTCAAGGTAATAGAAACAATGCCATTTAAGCCAAGTGCATCCA 1522 Query 1524 TTTGGGGATCACTGCTCAACTCTTGCAGGCTTCATGGGAATGTTTCAGTGGGAGAGATTG 1583 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1523 TTTGGGGATCACTGCTCAACTCTTGCAGGCTCCATGGGAATGTTTCAGTGGGAGAGATTG 1582 Score = 785 bits (425), Expect = 0.0 Identities = 484/513 (94%), Gaps = 1/513 (0%) Strand=Plus/Plus Query 1623 GGAACTACGTTATGGTTTCTAACATATAT-GCTGATGCAAAGATGTGGGACAATGTGGAT 1681 ||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1582 GGAACTATGTTATGGCTTCTAACATATATAGCTGAAGCAAAGATGTGGGACAATGTGGAT 1641 Query 1682 AAGATTCGAGAGATGATGAAACAAAGAGGGGTCAAAAAGGAAGCTGGTTGCAGTTGGGTA 1741 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1642 AAGATTCGAGAGATGATGAAACAAAGAGGGATCAAAAAGGAAGCTGGTTGCAGTTGGGTA 1701 Query 1742 CAGGTTAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTATGAGTTTCGTAATTCT 1801 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1702 CAGGTGAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTACGAGTTTCGTAATTCG 1761 Query 1802 GATGAGTATAAGAAAGTATGGACAGAACTACAAGAAGCAATTGAAAAATCCGGTTATTCG 1861 |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1762 GATGAGTATAAGCAAGTATGGACAGAACTACAGGAAGCAATTGAAAATTCCGGTTATTCT 1821 Query 1862 CCTAATACGAGTGTGGTGCTTCATGATGTTGATGAAGAAACCAAAGCAAATTGGGTTTGT 1921 ||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1822 CCTGATACGAGCGTGGTGCTTCATGATGTTGATGAAGAAACTAAGGCAAATTGGGTTTGT 1881 Query 1922 GGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATCCACACAGGTGAAGGGGTTCCA 1981 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1882 GGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATTCACACAGGTGAAGGGGTTCCA 1941 Query 1982 ATTAGGATTACCAAGAATCTCAGAGTATGTGCAGACTGTCATTCATGGATGAAGATTGTG 2041 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1942 ATTAGGATTACGAAGAATCTCAGAGTATGTGCAGACTGCCATTCATGGATGAAGATTGTA 2001 Query 2042 TCACAAGTAACTAGGAGAGTCATAGTCCTCAGAGACACAAAACGATTCCACCATTTCGTC 2101 || ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 2002 TCGCAAGTAACTGGGAGAGTTATAGTCCTCAGAGACACCAAACGATTCCACCATTTCGTT 2061 Query 2102 GACGGAATCTGCTCATGTAAAGACTACTGGTGA 2134 | ||| || |||||||||||||| ||||||||| Sbjct 2062 GCCGGCATTTGCTCATGTAAAGATTACTGGTGA 2094 Score = 159 bits (86), Expect = 6e-38 Identities = 104/113 (92%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 AATGATGATCGGGAAGTTGTGGAGATCTGTGGGAACCGTCGGAAAGTTTGATGGTCGTTA 60 |||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||| | Sbjct 21 AATGATGATCGGAAAATTGTGTAGATCTGTGGGAACCGTCGGAAAGTGTGATGGTCGGCA 80 Query 61 CGACGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATG 113 | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 TTATGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATG 133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80294236460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5