BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14350.1
Length=2749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478852 jgi|Araly1|478852|fgenesh2_kg.3__1553__AT3G14350.1 4069 0.0
Ahg474507 jgi|Araly1|474507|fgenesh2_kg.1__4461__AT1G53730.2 1498 0.0
> Ahg478852 jgi|Araly1|478852|fgenesh2_kg.3__1553__AT3G14350.1
Length=2681
Score = 4069 bits (2203), Expect = 0.0
Identities = 2532/2684 (94%), Gaps = 49/2684 (2%)
Strand=Plus/Plus
Query 12 TTCTTACTTATAGCAAATCGTGCTTGCCAGCTTTTTACTCGATAAATTCGTCTTATGGCT 71
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTACTGATAGCAAATCGTGCTTGCCAGCTTTTTACTCGATAAATTCGTCTTATGGCT 60
Query 72 GAAACTGTATAAAATCTAGCTT-ATCAAAATTTATCCTC-AAAGTTTATTAAATTAATAA 129
||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 61 TAAACTGTATAAAATCTAGCTTAAACAAAATTTATCCTCAAAAGTTTATTAAATTAATAA 120
Query 130 TAAAAATCTCTGAAGA-AAAGTTTGGGTTTTTGCCATTTGGGTTTTCTTCTGTCTCATCT 188
||||||| | | | | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAAAAATTTTTTTATACAAA-TTTGGGTTTTTGCCATTTGGGTTTTCTTCTGTCTCATCT 179
Query 189 GGTTTTCGAGAGAGATAGAGAAAGT--GA-GACAAGGTTAAGGAGGAAGAAGATGACTGA 245
|||||| ||||||| |||| |||| || || |||| |||||||||||||||||||||
Sbjct 180 GGTTTT--AGAGAGAGAGAG-AAGTGAGAGGAGAAGGAGAAGGAGGAAGAAGATGACTGA 236
Query 246 GAATCGGGTGGTTTTGGCTCTGCTTATACTCTGCATTGTTGGGTTTGAGCCAAGTTTCAT 305
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAATCGGGTGGTTTTGGTTCTGCTTATACTCTGCATTGTTGGGTTTGAGCCAAGTTTCAT 296
Query 306 CCATGGAGCTACGGATTCATCAGATACTTCGGCGTTAAACATCATGTTCAGCTCCATGAA 365
|||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 297 CCATGGAGCTACAGATTCATCAGATACTTCAGCGTTAAACACCATGTTCAGCTCCATGAA 356
Query 366 TTCTCCAGGACAGCTCTCACAATGGACAGCATCAGGAGGTGATCCTTGTGGCCAAAACTG 425
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 TTCTCCAGGACAGCTATCACAATGGACAACATCAGGAGGTGATCCTTGTGGCCAAAACTG 416
Query 426 GAAAGGCATAACTTGCTCTGGCTCTCGAGTTACACAAATAAAGTTACCAAGTCTTGGACT 485
|||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||
Sbjct 417 GAAAGGCATAACTTGCTCTGGCTCAAGAGTTACTCAAATAAAGTTGTCAGGTCTTGGACT 476
Query 486 TTCTGGATCACTTGGAT-TCATGCTTGATAAATTGACTTCTGTTACTGAGTTTGATATGA 544
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |
Sbjct 477 TTCTGGATCACTTGGATAT-ATGCTTGATAAATTGACTTCTGTTACTGAGTTTGATCTAA 535
Query 545 GCAACAATAACCTTGGAGGCGATTTGCCTTATCAGCTTCCTCCAAACTTGGAGCGATTGA 604
||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 536 GCAACAATAACATTGGAGGCGATTTGCCGTATCAGCTTCCTCCAAACTTGGAACGATTGA 595
Query 605 ATCTTGCTAATAACCAGTTCACTGGATCTGCTCAATATTCCATTTCTATGATGGCTCCTC 664
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 ATCTTGCTAATAACCAGTTAACTGGATCTGCTCAATATTCCATTTCTATGATGGCACCTC 655
Query 665 TTAAGTACCTCAACCTTGCTCACAACCAGTTGAAGCAGCTAGCTATTGACTTCACAAAAC 724
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 656 TTAAGTACCTCAATCTTGCTCATAACCAGTTGAAGCAACTAGCTATTGACTTCACAAAAC 715
Query 725 TCACCTCTCTCTCTATATTGGACCTCTCTTCCAATGCTTTTATAGGGTCTCTCCCAAACA 784
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 716 TCACCTCTCTCTCTATCTTGGACCTCTCTTCCAATGCTTTTACGGGGTCGCTCCCAAACT 775
Query 785 CTTGTAGCTCTCTTACGAGTGCAAAATCAATTTATCTTCAGAACAATCAGTTCTCAGGCA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTTGTAGCTCTCTTACGAGTGCAAAATCAATTTATCTTCAGAACAATCAGTTCTCAGGCA 835
Query 845 CCATTGATATTCTAGCCACCCTTCCTCTCGAAAATCTGAATATTGCAAACAATCGGTTCA 904
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 836 CCATTGATATACTAGCCACTCTTCCTCTCGAAAATCTGAATATTGCAAACAACCGATTCA 895
Query 905 CAGGCTGGATCCC-TGATTCTTTGAAAGGCATTAACTTGCAAAAAGATGGCAATTTATTA 963
|||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 896 CAGGATGGATCCCAT-ATTCTTTGAAAGGCATTAACTTGCAAAAAGATGGTAATTTATTA 954
Query 964 AATTCCGGGCCTGCACCTCCACCACCTCCTGGTACACCACCGATCAGTAAATCATCACCT 1023
||||| ||||||||||||||||||||||| |||||||| ||||| ||| || |||||||
Sbjct 955 AATTCTGGGCCTGCACCTCCACCACCTCCCGGTACACCTCCGATTAGT-AA--ATCACCT 1011
Query 1024 ACTCCGAAATCCGGGAACCGTGGAAA-CCGTTCCAATGGTGATTCCAGCAATAGCAAAGA 1082
||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||
Sbjct 1012 ACTCCGAAATCCGGGAACCGT-GAAACCCGGTCCAATGGTGATTCCAGCAGTAGCAAAGA 1070
Query 1083 CTCCAGCAAATCAGGGCTTGGAGCTGGT-GGAGTAGCAGGAATAGTCATTTCTTTGATAG 1141
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||
Sbjct 1071 CTCCAGCAAATCAGGGCTTGGAGCTGGTGGGA-TAGCAGGAATAGTCATTTCATTGTTAG 1129
Query 1142 TTGTAACAGCAGTCATAGCTTTCTTCTTGATCAAGAGAAAAAGATCAAAGCGGTCATCAT 1201
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1130 TTGTAACAGCAGTCATAGCTTTCTTCTTGGTCAAGAGAAAAAGATCAAAGCGGGCATCAT 1189
Query 1202 CCACGGACATTGAAAAGACTGATAATAACATTAACCAACCCATTATACTAGCGTCCAATG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1190 CCACGGACATTGAAAAGACTGATAATAACATTAACCAACCCATTATACTAGCGTCAAATG 1249
Query 1262 ACTTTCATCAAGAGAATAAGTCTGTACAGAATCCACCATTGGTTGAGACAAAGAAACTGG 1321
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1250 GCTTTCATCATGAGAATAAGTCTGTACAGAATCCACCATTAGTTGAGACAAAGAAACTGG 1309
Query 1322 ATACGTCATTGTCGATGAATCTACGTCCTCCACCATCTGAGCGACATAAGTCGTTTGATG 1381
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1310 ATACTTCATTGTCGATGAATCTACGTCCTCCACCAGCTGAGCGACATAAGTCGTTTGATG 1369
Query 1382 ACGATGATTCAACAATGAGAAAACCTATTGTTGCAAAGAAAGCTGCTGTTGTTGTTCCTT 1441
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1370 ACGATGATTCAACAATGAGAAAACCCATTGTAGCAAAGAAAGCTGCTGTTGTTGTTCCTT 1429
Query 1442 CAAATGTGAACACATATACGGTTTCAGATCTTCAAGTAGCTACCAACAGTTTCAGCGTAG 1501
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1430 CAAATGTGAACACATATACGGTTGCAGATCTTCAAATAGCTACCAACAGTTTCAGCGTAG 1489
Query 1502 ATAATCTTCTCGGTGAAGGAACATTTGGAAGAGTATACAGAGCTCAGTTTGAAGATGGAA 1561
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1490 ATAATCTTCTTGGTGAAGGGACATTTGGAAGAGTATACAGAGCTCAGTTAGAAGATGGAA 1549
Query 1562 AGGTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCACGGATACTGCTGATGATT 1621
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1550 AGGTACTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCACGGATACGGCTGATGATT 1609
Query 1622 TTACCGAAATTGTATCGAAAATAGCGCATTTGGATCACGAAAATGTCACAAAGCTTGATG 1681
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1610 TTACCGAAATAGTATCGAAAATAGCGCATCTGGATCACGAAAATGTCACAAAGCTTGATG 1669
Query 1682 GTTACTGTTCTGAACACGGGCAACACTTGGTGGTCTATGAGTTCCATAGAAACGGCTCAT 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 GTTACTGTTCTGAACACGGGCAACACTTGGTGGTCTATGAGTTCCATAGAAACGGCTCAT 1729
Query 1742 TGCATGACTTTTTACATCTTGCAGAAGAGGAAAGCAAACCGTTGATATGGAATCCCCGTG 1801
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1730 TGCATGACTTTTTACATCTTGCGGAAGAGGAAAGCAAACCCCTGATATGGAATCCCCGTG 1789
Query 1802 TCAAGATCGCTCTTGGCACTGCACGTGCATTGGAGTACTTGCATGAAGTTTGCTCACCAT 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1790 TCAAGATCGCTCTTGGCACTGCACGTGCATTGGAGTACTTGCATGAAGTTTGCTCTCCAT 1849
Query 1862 CTATAGTCCACAAGAACATTAAATCAGCAAATATTTTACTTGACTCAGAGCTGAATCCAC 1921
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1850 CTATAGTCCACAAGAACATTAAATCAGCAAATATTTTACTTGACTCAGAGCTAAATCCGC 1909
Query 1922 ACCTCTCAGACTCAGGTCTCGCTAGCTTCCTTCCCACTGCAAACGAGCTACTAAACCAAA 1981
||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||
Sbjct 1910 ACCTCTCAGACTCAGGTCTCGCTAGTTTCCTTCCCACTGCAAATGAGCTACTGAATCAAA 1969
Query 1982 ACGATGAAGGATACAGCGCACCAGAAACTTCAATGTCAGGCCAATACTCTTTGAAGAGCG 2041
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 ACGATGAAGGATACAGTGCACCAGAAACTTCAATGTCAGGCCAATACTCTTTGAAGAGCG 2029
Query 2042 ATGTTTACAGTTTTGGAGTAGTGATGCTCGAGCTTTTAACCGGAAGAAAACCATTCGACA 2101
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2030 ATGTTTACAGTTTTGGAGTAGTGATGCTTGAGCTTTTAACCGGAAGAAAACCATTCGACA 2089
Query 2102 GCACAAGGTCAAGATCGGAACAATCATTGGTAAGATGGGCAACACCTCAGCTTCACGACA 2161
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2090 GCTCAAGGTCAAGATCTGAACAGTCATTGGTAAGATGGGCAACACCTCAGCTTCACGACA 2149
Query 2162 TTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTATACCCGGTTAAATCCC 2221
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2150 TTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTTTACCCGGTTAAATCGC 2209
Query 2222 TCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTCCAGCCGGAGCCAGAGTTTAGACCAC 2281
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2210 TCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTTCAGCCGGAGCCAGAGTTTAGACCAC 2269
Query 2282 CCATGTCTGAAGTGGTGCAAGCATTGGTTGTATTGGTGCAGAGAGCTAACATGAGCAAGA 2341
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2270 CGATGTCTGAAGTGGTGCAAGCGCTGGTTGTATTGGTGCAGAGAGCTAACATGAGCAAGA 2329
Query 2342 GAACTGTTGGAGTCGGCTCCGGTAGCTCCGGCGTCAATGATTACATGTAAATTCTTTACC 2401
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 GAACTGTCGGAGCCGGCTCCGGTAGCTCCGGCGTCAATGATTACATGTAAATTCTTTACC 2389
Query 2402 TGATGAGAACCAACaaaaaaaaaCATAAAAATTTGCCCTTTTTCTCTTGTCT-GCTCGGA 2460
|||||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||
Sbjct 2390 TGATGAGAACCAACGAAGGAAAACATAAAAATTTGCCCTTTT-CTCTTGTCTTG-TCGGA 2447
Query 2461 ATCTGGATGGGACGACAACAAGTGACAACCGAGGACAGACAAAACAAAACAAAATCCttt 2520
||||| | |||||||||||||||| || | | | | || ||||| ||||||
Sbjct 2448 TTCTGGGTCGGACGACAACAAGTGA-AA---A--A-A-A-AA--CAAAA-----TCCTTT 2491
Query 2521 ttttCTTTCGGTTTCATAAAACTGATGATGAGAGAATAACAACA-A-CAA-CCCTTCACG 2577
|||| ||| ||||||||||||||||||| |||| | |||||||| | ||| |||||||||
Sbjct 2492 TTTTTTTTTGGTTTCATAAAACTGATGA-GAGA-A-TAACAACACAGCAAACCCTTCACG 2548
Query 2578 CATTGTACACTCCCATGTTTCTTTGTAATTTGTTCCCAATTTGTAGCtttttttttAGAT 2637
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2549 CATTGTACACTCCCATGTTTCTTTGTAATTTGTTCCCAATTTGTAGCTTTTTT---AGAT 2605
Query 2638 TCCGACAACATGAACAAAACCATTCCCTTTTGTGAGTTCCGATC 2681
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2606 TCCGACAACATGAACAAAACCATCCCCTTTTGTGAGTTCCGATC 2649
> Ahg474507 jgi|Araly1|474507|fgenesh2_kg.1__4461__AT1G53730.2
Length=2402
Score = 1498 bits (811), Expect = 0.0
Identities = 1744/2182 (80%), Gaps = 113/2182 (5%)
Strand=Plus/Plus
Query 228 GAGGAAGAAGATGACTGAGAATCGGGTGGTTTTGGCTCTGCTTATACTC--TGCATTGTT 285
|||||||||||||| |||||| ||| ||| |||||||| || ||||| |||||||||
Sbjct 7 GAGGAAGAAGATGAGGGAGAATTGGGCGGTGGTGGCTCTG-TT-TACTCTATGCATTGTT 64
Query 286 G--GG-TTTGAGCCAAGTTTCATCCATGGAGCTACGGATTCATCAGATACTTCGGCGTTA 342
| || ||||||| || |||||||||||||| || ||| ||||||| ||||| || ||
Sbjct 65 GTAGGATTTGAGCTTAGATTCATCCATGGAGCCACAGATGCATCAGACACTTCAGCATTG 124
Query 343 AACATCA-TGTTCAGCT-CCATGAATTCTCCAGGACAGCTCTCACAATGGACAGCATCAG 400
|||| || ||||||| | ||| ||||||||| ||||| |||| ||||| ||| |||
Sbjct 125 AACA-CATTGTTCAG-TGGTATGCATTCTCCAGCTCAGCTAACACAGTGGACTGCAGCAG 182
Query 401 GAGGTGATCCTTGTGGCCAAAACTGGAAAGGCATAACTTGCTCTGGCTCTCGAGTTACAC 460
||||||||||||||||| || |||| |||| ||||||| ||||||||||||||||| |
Sbjct 183 CTGGTGATCCTTGTGGCCAGAATTGGAGAGGCGTAACTTGTTCTGGCTCTCGAGTTACTC 242
Query 461 AAATAAAGTTACCAAGTCTTGGA-CTTTCTGGATCACTT---GGATTCATGCTTGATAAA 516
||||||||||| || ||||| || || |||||| ||||| |||| |||||||||||||
Sbjct 243 AAATAAAGTTATCAGGTCTT-GAGCTCTCTGGAACACTTGGAGGATACATGCTTGATAAA 301
Query 517 TTGACTTCTGTTACTGAGTTTGATATGAGCAACAATAACCTTGGAGGCGATTTGCCTTAT 576
||||||||| |||| ||| ||||| | |||| |||||| |||||||| ||||| || |||
Sbjct 302 TTGACTTCTCTTACCGAGCTTGATCTAAGCAGCAATAATCTTGGAGGTGATTTACCATAT 361
Query 577 CAGCTTCCTCCAAACT-TGGAGCGATTGAATCTTGCTAATAACCAGTTCACTGGATCTGC 635
||| |||||||||| | || | |||||| ||||||| ||||| || ||||||||| ||||
Sbjct 362 CAGTTTCCTCCAAA-TCTGCAACGATTGTATCTTGCGAATAATCAATTCACTGGAGCTGC 420
Query 636 T-CAATATTCCATTTCT-ATGATGGCTCCTCTTAAGTACCTCAACCTTGCTCACAACCAG 693
| | || || |||||| | ||| | | |||||||| || || |||| |||||| |||
Sbjct 421 TGC-GTACTCAATTTCTCA-GATAACAACACTTAAGTATCTAAATCTTGGTCACAATCAG 478
Query 694 TTGAA---GCAGCTAGCTATTGACTTCACAAAACTC-ACCTCTCTCTCTATATTGGACCT 749
|| || |||| ||||||| |||||||| || ||| | ||||||| | | |||||| |
Sbjct 479 TTTAAGGGGCAGATAGCTATCGACTTCACCAAGCTCGA-CTCTCTCACAACCTTGGACTT 537
Query 750 CTCTTCCAATGCTTTTATAG-GGTCTCT-CCCAAACACTTGTAGCTCTCTTACGAGTGCA 807
||||| |||| |||| | | ||| | || | |||| | |||||| || ||| |
Sbjct 538 CTCTTTCAATTCTTTCA-CGAACTCTTTACCGGGA-ACTTTTTCCTCTCTAACTAGTTTA 595
Query 808 AAATCAATTTATCTTCAGAACAATCAGTTCTCAGGCACCA-TTGATATTC-TAGCCACCC 865
|||||| | || ||||||||||||||||||||||||| || | ||| || ||||| |
Sbjct 596 AAATCACTATACCTTCAGAACAATCAGTTCTCAGGCA-CAGTCGAT-GTCTTAGCCGGTC 653
Query 866 TTCCTCTCGAAAATCTGAATATTGCAAACAATCG-GTTCACAGGCTGGAT-CCCTGATTC 923
||||||| || | ||| || ||||||||||| || ||||| || ||||| ||| | |||
Sbjct 654 TTCCTCTTGAGACTCTAAACATTGCAAACAA-CGACTTCACTGGGTGGATCCCCAG-TTC 711
Query 924 TTTGAAA-GGCATTAAC-TTGCA-AAAAGATGGCAATTTATTAAATTCCGGGCCTGCACC 980
||| ||| |||| | || || | |||||| ||||| | ||| ||| | || ||||| ||
Sbjct 712 TTT-AAAGGGCA-TCACATT-AATAAAAGACGGCAACTCATTCAATACTGGACCTGCGCC 768
Query 981 TCCACCACCTCCTGGTACACCACCGATCAGTAAATCATCACCTACTCCG-AAATCCGG-G 1038
||||||||| ||||| ||||| || ||| || | || || | ||| ||| |||| |
Sbjct 769 TCCACCACCACCTGGAACACCTCCAATCCGT--GGC-TC-CCCAAACCGTAAACCCGGAG 824
Query 1039 AACCGTGGAAA-CCGTTCCAATGGTGATTCCAGCA-ATA-GCAAAGACTCCAGCAAATCA 1095
| ||| |||| ||| || | || |||||||| || | | | | | || | || ||||||
Sbjct 825 GA-CGT-GAAAGCCGGTCTAGTGATGATTCCACCAGAAATGGAGATAC-CAAG-AAATCA 880
Query 1096 GGGCTTGGAGCTGGTGGAGTAGCAGGAATAGTCATTTCTTTGATAGTTGTAACAGC-AGT 1154
|| | |||||||||| | | ||||| ||| ||||||| ||| |||| || ||||| |
Sbjct 881 GGAATCGGAGCTGGTGCAATTGCAGGCATAATCATTTCATTGTTAGTAGTTACAGCTCTT 940
Query 1155 C--ATAGCTTTCTTCTTGATCAAGAGAAAAAGATCAAAGCGGTCATCATCCACGGACATT 1212
| | |||||||||||| |||| ||||||| ||||||| |||||||| ||| |||||||
Sbjct 941 CTTGTGGCTTTCTTCTTGTTCAAAAGAAAAAAATCAAAGAGGTCATCACCCATGGACATT 1000
Query 1213 GAAAAGACTGATAATAAC-ATTAACCAACCCATT-A-TACTAGCGTCCAATGACTTTCAT 1269
|| || || | | | ||||| | || || | | || || || || ||||||||
Sbjct 1001 -----GA--GA-AA-ACCGA-TAACC-AGCCTTTCACT-CTTGCTTCAAACGACTTTCA- 1047
Query 1270 CAAGAGAATAAGTCTGTACAGAATCCACCATTGGTTGAGACAAAGAAACTGGATACGTCA 1329
| || || || || | |||| | | ||| |||||||||||||| |||||||| |||
Sbjct 1048 C--GAAAACAATTCCATTCAGAGTTCTTCATCAGTTGAGACAAAGAAGCTGGATACTTCA 1105
Query 1330 TTGTCGATGAATCTACGTCCTCCACCA-TCTGAGCGACATAAGTCGTTTGATGACGATGA 1388
||||| || ||||| || ||||||||| | ||| || | || || |||||||| || ||
Sbjct 1106 TTGTCTATTAATCTCCGGCCTCCACCAGT-TGATAGAAACAAATCATTTGATGATGAAGA 1164
Query 1389 TTCAACAATGAGAAAACCTATTGTTG-CAAAGAAAGCTGCTGTTGTTGTTCCTTCAAATG 1447
||| || | ||||| |||| | || | |||||| | | || || ||||||||| |||
Sbjct 1165 TTCGAC-A--AGAAAGCCTAGTACTGTC-AAGAAATCCACGGTGGTGGTTCCTTCACATG 1220
Query 1448 TGA-ACACATATACGGTTTCAGATCTTCAAGTAGCTACCAACAGTTTCAGCGTAGATAAT 1506
||| || | ||| | ||| ||||||| ||| | ||||| |||||| ||||||||||||
Sbjct 1221 TGAGACTC-TATTCAGTTGCAGATCTCCAAATTGCTACTGGCAGTTTTAGCGTAGATAAT 1279
Query 1507 CTTCTCGGTGAAGGAACATTTGGAAGAGTATACAGAGCTCAGTTTGAAGATGGAAAGGTA 1566
||||| || ||||| || |||||| |||||||||||||| ||||||| |||||||||||
Sbjct 1280 CTTCTTGGAGAAGGGACTTTTGGACGAGTATACAGAGCTGAGTTTGATGATGGAAAGGTT 1339
Query 1567 CTTGCTGTGAAGAAAATCGACTCATCTGCGCTTCC-CACGGATACTG-CTGATGATTTTA 1624
||||||||||||||||| || || ||||| ||||| || || | || | |||||||| |
Sbjct 1340 CTTGCTGTGAAGAAAATTGATTCGTCTGCTCTTCCACATGG-CA-TGACCGATGATTTCA 1397
Query 1625 CCGAAATTGTATCGAAAATAGCGC-ATTTGGATCA-CGAAAATGTCACAAAGCTTGATGG 1682
||||| ||||||||||| || | |||||||||| | |||||| || ||||||| |||
Sbjct 1398 TTGAAATGGTATCGAAAATCGC-CAATTTGGATCATC-CAAATGTGACCAAGCTTGTTGG 1455
Query 1683 TTACTGTTCTGAACACGGGCAACACT-TGGTGGTCTATGAGTTCCATAGAAACGGCTCAT 1741
||||||| |||| ||||| ||||| | | ||||||||||| ||||| | ||| || ||||
Sbjct 1456 TTACTGTGCTGAGCACGGACAACA-TCTCGTGGTCTATGAATTCCACAAAAATGGATCAT 1514
Query 1742 TGCATGACTTTTTACATCTT-GCAGAAGAGGAAAGCAAACCGTTGATATGGAATCCCCGT 1800
| |||||||| ||||| ||| ||||||||||||| ||| | ||| | |||||| | ||
Sbjct 1515 TACATGACTTCTTACA-CTTATCAGAAGAGGAAAGTAAAGCATTGGTGTGGAATTCACGA 1573
Query 1801 GTCAAGATCGCTCTTGGCACTGCACG-TGCATTGGAGTACT-TGCATGAAGTTTGCTCAC 1858
||||||||||||||||| |||||||| | |||||||||| | ||||||||||||| ||||
Sbjct 1574 GTCAAGATCGCTCTTGGGACTGCACGCT-CATTGGAGTA-TCTGCATGAAGTTTGTTCAC 1631
Query 1859 CATCTATAGTCCACAAGAACATTAAATCAGCAAATATTTTACTTGACTCAGAGCTGAATC 1918
|||||||||| ||||||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct 1632 CATCTATAGTTGACAAGAATATCAAATCAGCCAATATTTTACTCGACTCAGAGCTGAATC 1691
Query 1919 CACACCTCTCAGACTCAGGTCTCGCTAGCTTCCTTCCCACTGCAAACGAGCTACTAAACC 1978
| ||| | ||||| | ||||||||| |||||||||||||| || || ||| |||||||||
Sbjct 1692 CTCACTTATCAGATTTAGGTCTCGCAAGCTTCCTTCCCACAGCTAATGAGTTACTAAACC 1751
Query 1979 AAAACGATGAAGGATACAGCGCACCAGAAACT-TCAATGTCAGGCCAATACTCTTTGAAG 2037
||| ||||||||| || || ||||| | || | ||||||||||||||||| |||||||||
Sbjct 1752 AAACCGATGAAGGGTATAGTGCACCTG-AAGTATCAATGTCAGGCCAATATTCTTTGAAG 1810
Query 2038 AGCGATGTTTACAGTTTTGGAGTAGTGATGCTCGAGCTTTTAACCGGAAGAAAACCATTC 2097
||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1811 AGCGACGTTTACAGTTTTGGAGTAGTGATGCTTGAACTTTTAACCGGGAGAAAACCATTC 1870
Query 2098 G--A-CAGCACAAGGTCAAGATCGGAACAATCATTGGTAAGATGGGCAACACCTCAGCTT 2154
| | |||||||||||||||||| || || |||||||| ||||||| ||||| || ||
Sbjct 1871 GACAGCAGCACAAGGTCAAGATCTGAGCAGTCATTGGTTCGATGGGCGACACCCCA-ATT 1929
Query 2155 -CACGACATTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTATACCCGGT 2213
|| |||||||||||||| | ||||||||||||||||||||| |||||||| || || ||
Sbjct 1930 ACATGACATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGGCTTTATCCTGT 1989
Query 2214 TAAATCCCTCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTCCAGCCGGAGCCAGAGTT 2273
|||||| || || || ||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1990 TAAATCTCTGTCTCGGTTTGCAGATGTTATCGCTCTCTGCGTCCAGCCGGAGCCGGAGTT 2049
Query 2274 TAGACCACCCATGTCTGAAGTGGTGCAAGCAT-TGGTTGTATTGGTGCAGAGAGCTAACA 2332
||||||||| ||||||||||| ||||| || | ||||||| || ||||||||||||||||
Sbjct 2050 TAGACCACCAATGTCTGAAGTTGTGCAGGC-TCTGGTTGTGTTAGTGCAGAGAGCTAACA 2108
Query 2333 TGAGCAAGAGAACTGTTGGAGT 2354
|||||||||||||||| |||||
Sbjct 2109 TGAGCAAGAGAACTGTCGGAGT 2130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103719737135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5