BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14360.1
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929220 jgi|Araly1|929220|scaffold_301677.1 2425 0.0
> Ahg929220 jgi|Araly1|929220|scaffold_301677.1
Length=1606
Score = 2425 bits (1313), Expect = 0.0
Identities = 1500/1591 (94%), Gaps = 9/1591 (1%)
Strand=Plus/Plus
Query 1 CAGAGACATGCACAAAGACAACGATTCGGGTTCGGGTTCGAATCCGGGTCAGGTTTCGAA 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 14 CAGAGACATGCACAAAGACAACGAATCGGGTTCGGGTTCGAATCCGGGTCAGGGTTCGAA 73
Query 61 CTACTTGATTGTTCGACCGCACCGAGGTGGGTACATAGACTTGTTCCGGTACGGTGTGAG 120
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 74 CTACTTGATTGTTCGACCGCACCGAGGTGGGTACAGAGACTTGTTCTGGTACGGTGTGAG 133
Query 121 AGATGACCAAACGAGCAAGGCAAAGTTCTTGGAGATGCCTGATAACCGCGAATGGAGCAC 180
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 134 GGATGACGAAACGAGCAAGGCAAAGTTCTTGGAGCGGCCTGAAAACCGCGAATGGAGCAC 193
Query 181 GATAACGATTGATGAAGAAGCAGAGGATCACCGTTGGGTAATCGTGGTTTCGATTCTGGT 240
||| | ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 194 GATGATGATTGATGAGGAAGCAGACGATCACCGTTGGGTAATTGTGGTTTCGATTCTGGT 253
Query 241 TCGTAAGATTATCAGACTTCTCCGAACACCAATGGAATTCACAGGTTTCGTCGTTGACTT 300
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 254 TCGTAAGATCATCAGACTTCTCCGAACGCCAATGGAATTGACAGGTTTCGTCGTTGACTT 313
Query 301 CTTCCTTAATCTGTTCTCTGCGAATGGTGGGTTCTTCGGTTTGCTTCTCCGGTTGATTCA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 314 CTTCCTTAATCTGTTCTCTGCGAATGGTGGATTCTTCGGTTTGCTTCTCCGGTTGATTCA 373
Query 361 AGCGAAAGTTGTGATACCAGAAAGAGGCTCTGTGACGTTTGTTAGTACAATTGGGCAACT 420
||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 374 AGCGAAAGTTGTGATTCCAGAAAGAGGCTCTGTGATGTTTGTTAGTACACTTGGGCAACT 433
Query 421 TGATGGGAGAATTAGTCTGTATAAGGAATGGAATTTCGTCGAACACTTGGAGGGCATTGA 480
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 434 TGATGGGAGAATTAGTCTGTTTAAGGAATGGAATTTTGTCGAACACTTGGAGGGCATTGA 493
Query 481 CTCGG----TT---G--ATTCTGGAAGGGTTAAAATCGAATTGGGAAGTCGTGGGCTTAT 531
||||| || | |||||||| |||| |||||||| |||||||||||||||||||
Sbjct 494 CTCGGTCAATTCGGGTTCTTCTGGAAAGGTTGAAATCGAACTGGGAAGTCGTGGGCTTAT 553
Query 532 GGATTTGTGTGTGATGGCGTCTAAGCTTGCGTATGAAAATGCTAAGGTTGTTGAAAACGT 591
||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||
Sbjct 554 GGATTTGTGTGTGATGGCGTCGAAGCTTGCGTATGAGAACGCCAAGGTTGTTGAAAACGT 613
Query 592 CGTTGATCTTCATTGGAAGATGAATCTGGTGGAGTTCTTGGATTGTTGGAATGATTATCA 651
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 614 CGTTGATCTTCATTGGAAGATGAATTTGGTGGAGTTCTTGGATTGTTGGAATGATTATCA 673
Query 652 GAAGCAGATGTCTACACAAGTTTTTGTGTTTACGGATAAGCAGAAAGATGCAAACTTGAT 711
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 674 GAAGCAGATGTCTACTCAAGTTTTTCTATTTACGGATAAGCAGAAAGATGCAAACTTGAT 733
Query 712 AGTAATCAGCTTCAGAGGTACTGAGCCGTTTGATGCTGATGATTGGGGAACAGATTTCGA 771
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 734 AGTAATCAGCTTCAGAGGCACTGAACCGTTTGATGCTGATGATTGGGGAACCGATTTCGA 793
Query 772 CTATTCGTGGTATGAAGTCCCCAATGTGGGAAAGCTTCACATGGGTTTCCTTGAAGCTAT 831
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 794 CTATTCGTGGTACGAAATCCCCAATGTGGGAAAGCTTCACATGGGATTCCTTGAAGCCAT 853
Query 832 GGGTTTAGGCAACAGAGACGACACTACCACTTTCCATTACAATCTCTTTGAACAAACCTC 891
||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 854 GGGTTTAGGTAACAGAGACGACACTCCCACTTTCCATTACAATCTCTTCGAGCAAACCTC 913
Query 892 CTCTGAGGAAGAGAATAGTAAAAAGAATCTTCTGGATATGGTAGAGAGAAGCGCTTATTA 951
||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 914 TTCTGAGGAAGAGAATAGTAAAAAGAATCTCCTAGATATGGTAGAGAGAAGCGCCTATTA 973
Query 952 TGCAGTCCGAGTCATTCTGAAACGTTTGCTTTCGGAACACGAAAACGCTCGGTTTGTAGT 1011
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 974 TGCAGTTCGAATCATTCTGAAACGTTTGCTTTCGGAACACGAAAACGCTCAGTTTGTAGT 1033
Query 1012 CACTGGTCACAGCTTAGGAGGTGCTTTAGCGATACTGTTTCCCACATTGTTGGTGTTGAA 1071
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1034 CACTGGTCATAGCTTAGGAGGTGCTTTAGCGATACTGTTTCCCACATTACTGGTGTTGAA 1093
Query 1072 TGAGGAAACAGAGATAATGAAGAGGCTGCTTGGAGTTTACACGTTTGGACAACCAAGAAT 1131
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1094 AGAGGAAACAGAGATAATGAAGAGGCTGCTTGGAGTTTATACGTTTGGACAACCGAGAAT 1153
Query 1132 CGGGAACAGAGAGGTCGGGTTATTCATGAAAGCTCAACTGAATCAACCTGTGGATCGATA 1191
|||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1154 CGGGAACAGAGATGTCGGGTTATTCATGAAAGCTCAACTGAATCAACCCGTAGACCGATA 1213
Query 1192 CTTCCGAGTCGTTTACTGCAACGATATCGTCCCGAGATTGCCCTACGACGACAAAACGTT 1251
||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 1214 CTTCCGAGTTGTTTACTGCAACGATCTTGTCCCAAGATTGCCCTACGACGACAAAACGTT 1273
Query 1252 CCTCTATAAACATTTCGGACTCTGTCTTTTCTATGACAGCTTCTACAACGAAACAAAAGC 1311
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1274 CCTCTACAAACATTTTGGACTCTGTCTTTTCTATGACAGTTTCTACAACGAAACAAAAGC 1333
Query 1312 AGAGGATGAGCCGGACCCGAACCCTTACGGTCTGCGTTACAAGATTCTTGGGCATGTGAT 1371
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1334 AGAGGATGAGCCGGACCCGAACCCTTACGGTCTGCGTTACGAGATTCTTGGGCATGTTAT 1393
Query 1372 CGCAGTTTGGGAGTTGGTTAGAGGCTTGACGATGGGGTACACTCATGGACCAGATTACAA 1431
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1394 TGCAGTTTGGGAGTTGGTTAGAGGCTTGACGATGGGGTACACTCATGGACCGGACTACAA 1453
Query 1432 AGAGGGATGGTTTAGGATCTTGTTTAGGCTTATGGGGCTGGTGATTCCTGGTCTGTCGGA 1491
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1454 AGAAGGATGGTTTAGGATCTTGTTTAGGCTCATGGGGCTGGTGATTCCTGGTCTGTCGGA 1513
Query 1492 TCATTGCATGACTGATTACGTGAACTCGGTTAGGCTTGGACCCGATAATGAACTTCAGAT 1551
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1514 TCATTGCATGACTGACTACGTGAACTCGGTTAGGCTTGGACCCGATAATGAACTTCAAAT 1573
Query 1552 GTCCTCTCTTTGAAAAGTGCTCTGttttttt 1582
||||||||||||| ||| ||||||||||||
Sbjct 1574 GTCCTCTCTTTGAGGAGTACTCTGTTTTTTT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5