BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14362.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929221 jgi|Araly1|929221|scaffold_301678.1                        283    1e-75


> Ahg929221 jgi|Araly1|929221|scaffold_301678.1
Length=253

 Score =  283 bits (153),  Expect = 1e-75
 Identities = 181/194 (93%), Gaps = 3/194 (2%)
 Strand=Plus/Plus

Query  66   ATAATATAAACCCTAA--TTCAATCCCATGGCAGGATTAAAGAGAAAGTTCAACAAAGGA  123
            |||| | |||||||||  ||| | |||||||||||||||||||||||||| |||||||| 
Sbjct  61   ATAA-AGAAACCCTAATTTTCGACCCCATGGCAGGATTAAAGAGAAAGTTTAACAAAGGT  119

Query  124  CACGCTTTTACAAGCAAATGTGTTTCCTTGGTGAAGGAACAACGAGCTCGTCTCTACATT  183
            || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  120  CATGCCTTTACAAGCAAATGTGTTTCCTTGGTGAAGGAACAACGAGCTCGACTCTACATT  179

Query  184  CTCCGCCGTTGTGCCACCATGCTTTGCTGCTGGTACATCCATGGCGATGAGTAGAGAGAA  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CTCCGCCGTTGTGCCACCATGCTTTGCTGCTGGTACATCCATGGCGATGAGTAGAGAGAA  239

Query  244  CCATTTGACTCCTC  257
            || ||||||| |||
Sbjct  240  CCCTTTGACTTCTC  253



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5