BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14370.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929222 jgi|Araly1|929222|scaffold_301679.1 2340 0.0
Ahg923932 jgi|Araly1|923932|scaffold_105213.1 676 0.0
> Ahg929222 jgi|Araly1|929222|scaffold_301679.1
Length=1483
Score = 2340 bits (1267), Expect = 0.0
Identities = 1412/1484 (95%), Gaps = 1/1484 (0%)
Strand=Plus/Plus
Query 16 AGTGAATCAAGAAAGaaaaaaaTGGAACAAGAAGATTTCTATTTCCCTGACACCGATCTT 75
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTGAATCAAGAAA-AAAAAAATGGAACAAGAAGATTTCTATTTCCCTGACACCGATCTT 59
Query 76 GATCTCAGCTTCACATCCACCACTACCGACCGTACATTCGCCTCCTCGAGCGCTCGCACA 135
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 60 GATCTCAGCTTCACATCCACCACCACCGACCGTACATTCACCTCCTCGAGCGCTCGCACA 119
Query 136 AGTCTAACATTAAGCTTCAACGACAGACTCTCTACTTCCTCTGCAGTCACAACCTCATCC 195
|||||||||||||||||||||||||||||||| |||||||| || || |||||||| |||
Sbjct 120 AGTCTAACATTAAGCTTCAACGACAGACTCTCCACTTCCTCCGCCGTAACAACCTCCTCC 179
Query 196 ACCTCCTCCTCCTCCGTCAACCACCGTCGTCATGATCCTCACTGGTCAGCAATCAAATCA 255
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCTCCTCTTCCACCGTCAACCACCGTCGTCATGATCCTCACTGGTCAGCAATCAAATCA 239
Query 256 GCAAAACTTCTCTCCTCCGACGGAAACATCCACCTCCGCCACCTGAAACTTATACGCCAC 315
||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 240 GCAAAACTTATCTCCTCCGATGGAAACATCCACCTCCGTCACCTGAAACTTATACGCCAC 299
Query 316 CTCGGCACCGGAAACCTAGGCCGAGTGTTCCTCTGTAACCTCCGTGACTCTTCCGCAAGA 375
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 300 CTCGGCACAGGAAACCTAGGCCGAGTCTTCCTCTGTAACCTCCGTGACTCCTCCGCAAGA 359
Query 376 TTCGCTTTAAAGGTCATCGACCGTAACTGTCTCACGACGGAGAAGAAGCTCTCTCAGGTC 435
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCGCCCTAAAGGTCATTGACCGTAACTGTCTCACGACGGAGAAGAAGCTCTCTCAGGTC 419
Query 436 GAGACGGAGGCAGAGATCCTCTCCTTGCTGGACCACCCTTTTCTTCCTACGCTCTATGCT 495
||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| |||
Sbjct 420 GAGACGGAGGCAGAGATCCTCTCCTTGCTAGACCATCCTTTCCTCCCTACGCTCTACGCT 479
Query 496 CGTATCGACGAGTCTCACTACACGTGTCTCCTCATTGATTATGCTCCCAATGGAGACTTA 555
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 480 CGTATCGACGAGTCTCACTACACGTGTCTCCTCATTGATTATGCACCAAACGGAGACTTA 539
Query 556 CATTCCTTGTTACGCAAGCAACCTGGTAACCGTTTACCGATTCAGCCGGTTAGATTCTTT 615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTCCTTGTTACGCAAGCAACCTGGTAACCGTTTACCGATTCAGCCGGTTAGATTCTTC 599
Query 616 GCCGCCGAAGTTCTCGTTGCATTAGAGTACCTTCACGCAATGGGAATCGTATACCGCGAT 675
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCGCCGAAGTTCTCGTCGCATTAGAGTACCTTCACGCAATGGGAATCGTATACCGCGAT 659
Query 676 CTTAAACCTGAAAACGTTTTGCTTCGTGAAGACGGACACGTCATGTTGTCGGATTTTGAT 735
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 CTTAAACCTGAAAACGTTTTGCTTCGTGAAGACGGTCACGTCATGTTGTCGGATTTTGAT 719
Query 736 CTTTGTTTCAAATCCGACGTTGTCCCTACTTTTAAATCTCGTCGCTACCGGAGATCTTCT 795
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 720 CTTTGTTTTAAATCCGACGTTGTCCCTACCTTTAAATCTCGTCGGTACCGGAGAACTTCT 779
Query 796 TCATCTCCGTCGCTTCGTCGTAGAAGAAGCGGTTGCTTCTCCGTTGCTGCGGAGAAAAAG 855
|| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 780 TCGTCTCCGTCGCTTCGTAGGAGAAGGAGCGGTTGCTTCTCCGTTGCTGCGGAGAAAAAG 839
Query 856 TACGAGAGAGAGGAGATTGTTTCAGAGTTTGCGGCAGAGCCTGTAACGGCGTTTTCAAGA 915
||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 840 TACGAGAGAGAGGAGATCGTTTCGGAGTTTGCGGCAGAGCCTGTGACGGCGTTTTCAAGG 899
Query 916 TCTTGTGTCGGAACACATGAGTATCTTGCGCCGGAGCTAGTTTCCGGCAACGGACACGGA 975
||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 900 TCTTGCGTCGGAACACATGAGTACCTTGCACCGGAGCTAGTCGCCGGCAACGGACACGGA 959
Query 976 AGCGGAGTAGACTGGTGGGCGTTCGGAATATTCCTTTACGAGTTATTGTACGGTACGACG 1035
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 960 AGCGGAGTAGACTGGTGGGCGTTTGGAATATTCCTTTACGAGTTGTTGTACGGTACGACG 1019
Query 1036 CCGTTTAAGGGAGAGAGTAAAGAGCAAACACTGCGGAATATAGTATCGACCACTAAGACC 1095
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1020 CCGTTTAAGGGAGAGAGTAAAGAGCAAACCCTGCGCAATATAGTATCGACCACTAAGTCC 1079
Query 1096 GCGAGTTTCCATATGGACGGTGATTTAGATGAAGCTAGGGACTTGATTGAGAAGCTTTTG 1155
||||||||||| |||||| ||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 1080 GCGAGTTTCCACGTGGACGTTGATTCAGAGGAAGCTAGGGATTTGATTGAGAAGCTTTTG 1139
Query 1156 GTTAAGGACCCAAGGAAAAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAACGTCAT 1215
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTAAGGACCCGAGGAAAAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAACGTCAT 1199
Query 1216 CCGTTTTTTGATGGAATCAAGTGGCCGTTGATTAGGCATTATAAGCCACCGGAAGAAGTT 1275
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCGTTTTTCGATGGAATCAAGTGGCCGTTGATTAGGCATTATAAGCCACCGGAAGAAGTT 1259
Query 1276 AGAGGTCTTGTGATTAAGAAGTCAACGAGACCACATGCTAGTCACGTGATTGCCGTTTCA 1335
|||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1260 AGAGGTCTTGTGATAAAGAAGTCAACGAGATCACATGCTGGTCACGTGATTGCCGTTTCA 1319
Query 1336 CCGCGACGGAGAAAATCGTTTTTGTGGAGGGCGTTGTCATATTTACTGCGCGGTAAAAGC 1395
|| ||||||| || || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1320 CCAAGACGGAGGAAGTCATTTTTGTGGAGGGCGTTGTCATATTTACTGCGCGGTAAAAAC 1379
Query 1396 TCTAGTGGTGGGAGTAAAAATCAGAGCAATAGTAATTATTATCACTATGTGGGCAAAAGC 1455
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1380 TCTAGTGGTGGGAGTAAAAATCAGAGCAATAGTAATTACTATCATTATGTGGGCAAAAGC 1439
Query 1456 TACGCGAGTCGCAAACGCGTTTAAGGCTGTCTCACGCttttttt 1499
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 TACGCGAGTCGCAAACGCGTTTAAGGCTGTCTCACGCTTTCTTT 1483
> Ahg923932 jgi|Araly1|923932|scaffold_105213.1
Length=1492
Score = 676 bits (366), Expect = 0.0
Identities = 1128/1482 (76%), Gaps = 107/1482 (7%)
Strand=Plus/Plus
Query 61 CCT-GACACCGATCTTGATCTCAGCTTCACATCCACCACTACCGACCGTACATTCGC--C 117
||| ||||||||||| |||||||||||||| ||||| || || || ||||||||| | |
Sbjct 41 CCTCGACACCGATCTCGATCTCAGCTTCACCTCCACAACAACAGATCGTACATTCACTTC 100
Query 118 -T----C-CT----CGAG---CGCTCGCACAAGTCTAACATTAAGCTTCAACGACAGACT 164
| | || |||| ||| ||| |||| || || ||||||||||||||||||||
Sbjct 101 ATCAAGCGCTAGAACGAGTCTCGCACGCTCAAGCCTCACCTTAAGCTTCAACGACAGACT 160
Query 165 CTCTACTTC--C-TCTGCAGTC-ACAACCTCATCCACCTCCTCCTCCTC-CGTCA-ACCA 218
||| || | | || | || || ||| | ||| || || | | | | | | ||||
Sbjct 161 CTCCACCGCAACAACT-CCTTCAACCACCACTTCCTCCGCCGCAACAACAC-T-ACACCA 217
Query 219 CCGTCGTCATGATCCTCACTGGTCAGCAATCAA-ATCAGCAA-AACTTCTCTCCTCCGAC 276
||||||| | |||||||||||| || |||| || | | |||| ||| |||||||||||||
Sbjct 218 CCGTCGTTACGATCCTCACTGGACATCAAT-AAGAGCCGCAACAAC-TCTCTCCTCCGAC 275
Query 277 GGAA-ACATCCACCTCCGCCACCTGAAACTTATACGCCACCTCGGCACCGGAAACCTAGG 335
|||| || | || ||||||||| | ||||| | | ||||||||| || ||||| || ||
Sbjct 276 GGAAGAC-TTCATCTCCGCCACTTTAAACTCGTCCACCACCTCGGAACTGGAAATCTTGG 334
Query 336 CCGAGTGTTCCTCTGTAACCTCCGTGA---CTCT-TCCGCA--AGATTCGC-TTTAAAGG 388
||| || ||||||||| |||||||||| | || || || ||||||| ||||| |
Sbjct 335 CCGTGTTTTCCTCTGTCACCTCCGTGATTGCCCTAACCCCACCGGATTCGCACTTAAA-G 393
Query 389 TCATCGACCGTAACTGTCTCACGACGGAGAAGAAGCTCTCTCAGGTCGAGACGGAGGCAG 448
| ||||| ||| | ||| || | |||| |||||| || || || || || || || || |
Sbjct 394 TAATCGATCGTGA-TGT-TCTC-ACGGCGAAGAAACTTTCACACGTGGAAACAGAAGCTG 450
Query 449 AGATCCTCTCCTTGCTGGACCACCCTTTTCTT-CCTACGCTCTATGCTCGTATCGACGAG 507
|||||||||||||||| |||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 451 AGATCCTCTCCTTGCTAGACCACCC-ATTCTTACCTACACTCTACGCACGTATCGATGCT 509
Query 508 TCTCACTACACGTGTCTCCTCATTGATTA-TGCTCCCAATGGAGACTTACATTCCTTGTT 566
|||||||| || ||||| ||||||||||| ||| || || || || |||||||||||| |
Sbjct 510 TCTCACTATACTTGTCTTCTCATTGATTATTGC-CCTAACGGTGATTTACATTCCTTGCT 568
Query 567 ACGCAAGCAACCTGGTAACCGTTTACCGA-TTCAGCCGGTTAGATTCTTTGCCGCCGAAG 625
|| |||||||| ||||| ||||||| ||| ||||||||||||| ||||| ||||
Sbjct 569 CCGTAAGCAACCAAACAACCGGTTACCGATTTC-TTCGGTTAGATTCTTCGCCGCTGAAG 627
Query 626 TTCTCGTTGCATTAGAGTACCTTCACGCAATGGGAATCGTATACCGCGATCTTAAACCTG 685
| ||||| || || ||||| || ||||| | |||||||| || || ||||| ||||| |
Sbjct 628 TACTCGTAGCCTTGGAGTATCTCCACGCTCTCGGAATCGTTTATCGAGATCTCAAACCAG 687
Query 686 AAAACGTTTTGCTTCGTGAAGACGGACACGTCATGTTGTCGGATTTTGATCTTTGTTTCA 745
| || | ||| |||||||||| |||||| | ||| | || ||||| ||||| |||||||
Sbjct 688 AGAATATCTTGATTCGTGAAGATGGACACATTATGCTCTCAGATTTCGATCTCTGTTTCA 747
Query 746 AATCCGACGTTGTCCCTACTTTTAAATCTCGTCG-CTACCGGAGATCTTCTTCATCTCC- 803
|| |||| || || || ||||| |||||| | || |||| || |||| || |||||
Sbjct 748 AAGCCGATGTAGTTCCAACTTTCCGATCTCGAAGACT-CCGGCGAGCTTCGTCTTCTCCG 806
Query 804 --GTCG-CTTCGTCGTAGAAGAAGCGGTTGCTTCTCCGTTGCTGCGGAGAAAAAGTACGA 860
| | | ||||||| | | ||||||| || | | | | ||||| | |||||||
Sbjct 807 AGGAGGAC-TCGTCGT-GTTG--GCGGTTG-TT-T-C--T-CCACGGAGGTAGAGTACGA 856
Query 861 GAGAGAGGAGATTGTTTCAGAGTTTGCGGCAGAGCCTGTAACGGCGTTTTC-AAGATCTT 919
|||||| ||||| || | || || ||||| ||||| || ||||||||||| || ||| |
Sbjct 857 GAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACGGCGTTTTCGAA-ATCGT 915
Query 920 GTGTCGGAACACATGAGTATCTT-GCGCCGGAGCTAGTTTCCGGCAACGGACACGGAAGC 978
|||| ||||| || |||||| || |||||||||||||| |||| |||||||||||||||
Sbjct 916 GTGTAGGAACTCACGAGTAT-TTAGCGCCGGAGCTAGTCGCCGGAAACGGACACGGAAGC 974
Query 979 GGAGTAGACTGGTGGGCGTTCGGAATATTCCTTTACGAGTTATTGTACGGTACGACGCCG 1038
|| ||||| ||||||||||| || ||||| || |||||| | || |||| |||||||||
Sbjct 975 GGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAGATGTTACACGGAACGACGCCG 1034
Query 1039 TTTAAGGGAGAG-AGTAAAGAGCAAACACTGCGGAATATAGTATCGACCACTAAGACCG- 1096
||||| || | | | ||||| ||||||||||| ||||||||||| | || | || ||
Sbjct 1035 TTTAAAGGTG-GTACCAAAGAACAAACACTGCGCAATATAGTATC-A-AACGATGA-CGT 1090
Query 1097 CGAGTTT-CCATATG--GACGG-TGATTTAGATGAAGCTAGGGACTTGATTGAGAAGCTT 1152
| |||| | || | || || | | | | |||||| | ||| ||||| ||||||||
Sbjct 1091 GGCGTTTACGTTA-GAAGA-GGAAGGTATGGTTGAAGCGAAGGATTTGATAGAGAAGCTG 1148
Query 1153 TTGGTTAAGGACCCAAGGAAAAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAACGT 1212
|| || || || || ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1149 TTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAAAGG 1208
Query 1213 CATCCGTTTTTTGATGGAATCAAGTGGCCGTTGATTAGGCATTATAAGCCACCGGAAGAA 1272
||| |||||| | |||||||||||||||||||| || | ||||| || ||||| ||
Sbjct 1209 CATGAGTTTTTCCAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAACCGCCGGA-GA- 1266
Query 1273 GTTAGAGGTCTTGTGATTAAGAAGTCAACGAGACCACATGCTAGTCACGTGATTGCCGTT 1332
|| | || || |||| |||| | || | | | ||||||| ||||||||| ||| |||
Sbjct 1267 -TTCGGGGGCTGGTGAAGAAGACG--AA-G-G-C-ACATGCTGGTCACGTGACTGCTGTT 1319
Query 1333 -TCACCGCGACGGAGAA--AATCGTTTTTGTGGAGGGCGTTGTCATATTTACTGCGCG-G 1388
| || || |||||| | || || |||||| |||| || || ||||||||| | |
Sbjct 1320 GTTAC-GCCACGGAGGAGGAA--GTGGTTGTGGTGGGCTTTATCGCATTTACTGC-CTAG 1375
Query 1389 TAAAAGCT----CTAGTGGTGGGAGTAAAAATCAGAGCAATAGTAATTATTATCACTATG 1444
|||||||| | || | | | ||||||| ||||||||| | |||||| ||||| ||||
Sbjct 1376 TAAAAGCTTGAACAAGAG-TAGCAGTAAAATTCAGAGCAACAATAATTACTATCATTATG 1434
Query 1445 TGGGCAAAAGCTA---CGC-GAGTCGCAAACGCGTTTAAGGC 1482
|||| |||||||| ||| | || |||||||||||||||||
Sbjct 1435 TGGGTAAAAGCTATAACGCTG-GTGGCAAACGCGTTTAAGGC 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5