BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14380.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478855 jgi|Araly1|478855|fgenesh2_kg.3__1556__AT3G14380.1 909 0.0
> Ahg478855 jgi|Araly1|478855|fgenesh2_kg.3__1556__AT3G14380.1
Length=654
Score = 909 bits (492), Expect = 0.0
Identities = 616/673 (92%), Gaps = 20/673 (3%)
Strand=Plus/Plus
Query 2 aaaaaaaaaaGATGGACAAGACTGATCAAACCGCCATTGACGAATCAGCTTTAGTGCTTA 61
|||| |||| |||||||||||||||||||| || ||||||| |||||||||| |||||
Sbjct 1 AAAACAAAATCATGGACAAGACTGATCAAACAGCTATTGACGGCTCAGCTTTAGAGCTTA 60
Query 62 ATCGCACTGAGAAATCGGCAGAGGCGGTCCTGCGAGTAGCATCAATGGCTCTAAGTATTA 121
| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACCGCACTGAGAAAACGGTAGAGGCGGTCTTGCGAGTAGCATCAATGGCTCTAAGTATTA 120
Query 122 CGGGTCTCGTCATCATGATCAAGAACTCTATCTCCAACGAATTTGGCTCTGTTTCTTACT 181
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 121 CGGGTCTCGTCATCATGATCAAGAACTCTATCTCCAACGACTTTGGCTCTCTTTCTTACT 180
Query 182 CAAATATTGGAGCTTTCATGTATTTGGTGAGTGCTAATGGCGTTTGTGCTGCTTATTCTC 241
||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 181 CAAATCTTGGAGCTTTCATGTATTTGGTGGGTGCTAATGGCGTTTGTGCTGCCTATTCTC 240
Query 242 TTCTCTCGGCTCTCGCAATATTAGCGCTTCCGTGTCCAATAAGCAAGGTCCAAGTCAGGA 301
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTTTCTGCTCTCGCAATATTAGCCCTTCCGTGTCCAATAAGCAAGGTCCAAGTCAGGA 300
Query 302 CATTGTTCTTGCTTGACCAGGTGGTCACATACGTGGTTCTAGCGGCTGGGGCTGTATCTG 361
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATTATTCTTGCTAGACCAGGTGGTCACATACGTGGTTCTAGCGGCTGGGGCTGTATCTG 360
Query 362 CAGAGACGGTTTACTTAGCATACTATGGAAACATACCCATTACTTGGAGCTCTGCTTGTG 421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CAGAGACGGTTTACTTAGCATACTATGGAAACATACCCATCACTTGGAGCTCTGCTTGTG 420
Query 422 ACTCCTATGGA-TCCTTCTGTCATAATGCATTGATTTCGGTTGTTTTCACATTCGTTGTC 480
||||||||||| || |||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 421 ACTCCTATGGAATC-TTCTGTCACAAGGCATTGATCTCGGTTGTGTTCACATTCGTTGTC 479
Query 481 TCCCTTCTCTACATGTTGCTCTCGCTTATCTCTTCCTATCGACTCTTCACCAGATTTGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TCCCTTCTCTACATGTTGCTCTCGCTTATCTCTTCCTATCGACTCTTCAGCAGATTTGAA 539
Query 541 GCACCCTAAACGAAATCAAAGAACACAAAGAAAACAAAGGCAACAAGCGTGACAGAGGAA 600
|||||||||| | |||||||||| | ||||||| |||||||||| |
Sbjct 540 GCACCCTAAA--A-------GAACACAAAG--------G-CAACAAGAGTGACAGAGGCA 581
Query 601 TAAAGATATATGTCCTATTTGGTTAAAGTGAGTAATTGAATATTAAGGTTTTTCGCTAAT 660
||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 582 GAAAGATATATGTCTTGTTTGGTTGAAGTGAGTAACTGAATATTAAGGTTTTTCGCTAAT 641
Query 661 TACATTTTTGTCT 673
|||| |||| |||
Sbjct 642 TACAATTTTCTCT 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5