BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14395.1

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478858 jgi|Araly1|478858|fgenesh2_kg.3__1559__AT3G14395.1         787    0.0  


> Ahg478858 jgi|Araly1|478858|fgenesh2_kg.3__1559__AT3G14395.1
Length=532

 Score =  787 bits (426),  Expect = 0.0
 Identities = 504/540 (93%), Gaps = 12/540 (2%)
 Strand=Plus/Plus

Query  22   CAATCTCTCATTTCTCTCTTTCTTTTTTCCTTCCCATGCGCAACGAAGAAGCTTTCTTCT  81
            ||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||
Sbjct  1    CAATCTCTCATTTCTATC--T-TTTTTTCCTTCCCATGCGCAACGAAGAAGCTTTCTTCT  57

Query  82   CCCAACATTCTCTTTTGGATTCAGAAGATCTCAATCAGCAATGGAAACAGTTAAGACCTC  141
            ||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  58   CCCAACACTCTTTTTTCGATTCAGAAGATCTCAATCAGAAATGGAAACAGTTAAGACCTC  117

Query  142  CAGGTTCACT-ACTGAGGTGGCTCCGGCTAAGTTTATATCGGCGACAAGAGAACCATTCA  200
            |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  CAGGTTTA-TCACTGAGGTGGCTCCGGCTAAGTTTATATCGGCGACAAGAGAACCATTCA  176

Query  201  AGAACATGTTGACAACAATCTCCGAGGAAGACTTTGACTTTGATGAACTAGTCAGAGCCA  260
            |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  177  AGAACATGTTGACAACCATCTCCGAGGAAGACTTTGACTTTGATGAATTAGTCAGAGCCA  236

Query  261  CTGCAGAGAGACTCTCTTCTTCTTGTCCAGGCTCCTCCTCCTGGTCTCTTGCTCACTACG  320
            ||||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct  237  CTGCAGATAGACTCTCATCTTCTTGTCCAGGCTCTTCCTCTTGGTCTCTTGTTCACTACG  296

Query  321  CCAAGATCAACAGAGTCTCTTCTTCTTAGAGCATTCAATTGCCATCCCAAAATGCAtttt  380
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  297  CCAAGATCAACAGAGTCTCTTCTTCTTAGAGCATTCAATTGCCATTCCAAAATGCATTTT  356

Query  381  tttctttctctttttCAATAATACCAAAGAAGATGATCTGTTTGTAATCTCTTCAGCATC  440
            || || ||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct  357  TT-CTCTCT-TTTTTCAATAATACCGAAGAAGAAGATTTGTTTGTAATCTCTTCAGCATC  414

Query  441  AGAGtttttttATCTACTTCGCGTTGTTGAATGTTTTC-CTGCTAGCATTCTTGAATTAT  499
            ||||||||   ||||||||| ||||||||||||||||| | |||||| ||||||||||||
Sbjct  415  AGAGTTTTCC-ATCTACTTCTCGTTGTTGAATGTTTTCAC-GCTAGCGTTCTTGAATTAT  472

Query  500  -T-TTATGATCACTTCTGTTTATTAGCATTCTTGAATCATCTATGATCGATCCTTTTATG  557
             | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  473  ATGTTATGATCACTTCTGTTTATTAGCATTCTTGAATCACCTATGATCAATCCTTTTATG  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20413240115


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5