BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14395.1 Length=559 Score E Sequences producing significant alignments: (Bits) Value Ahg478858 jgi|Araly1|478858|fgenesh2_kg.3__1559__AT3G14395.1 787 0.0 > Ahg478858 jgi|Araly1|478858|fgenesh2_kg.3__1559__AT3G14395.1 Length=532 Score = 787 bits (426), Expect = 0.0 Identities = 504/540 (93%), Gaps = 12/540 (2%) Strand=Plus/Plus Query 22 CAATCTCTCATTTCTCTCTTTCTTTTTTCCTTCCCATGCGCAACGAAGAAGCTTTCTTCT 81 ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| Sbjct 1 CAATCTCTCATTTCTATC--T-TTTTTTCCTTCCCATGCGCAACGAAGAAGCTTTCTTCT 57 Query 82 CCCAACATTCTCTTTTGGATTCAGAAGATCTCAATCAGCAATGGAAACAGTTAAGACCTC 141 ||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 58 CCCAACACTCTTTTTTCGATTCAGAAGATCTCAATCAGAAATGGAAACAGTTAAGACCTC 117 Query 142 CAGGTTCACT-ACTGAGGTGGCTCCGGCTAAGTTTATATCGGCGACAAGAGAACCATTCA 200 |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CAGGTTTA-TCACTGAGGTGGCTCCGGCTAAGTTTATATCGGCGACAAGAGAACCATTCA 176 Query 201 AGAACATGTTGACAACAATCTCCGAGGAAGACTTTGACTTTGATGAACTAGTCAGAGCCA 260 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 177 AGAACATGTTGACAACCATCTCCGAGGAAGACTTTGACTTTGATGAATTAGTCAGAGCCA 236 Query 261 CTGCAGAGAGACTCTCTTCTTCTTGTCCAGGCTCCTCCTCCTGGTCTCTTGCTCACTACG 320 ||||||| |||||||| ||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 237 CTGCAGATAGACTCTCATCTTCTTGTCCAGGCTCTTCCTCTTGGTCTCTTGTTCACTACG 296 Query 321 CCAAGATCAACAGAGTCTCTTCTTCTTAGAGCATTCAATTGCCATCCCAAAATGCAtttt 380 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 297 CCAAGATCAACAGAGTCTCTTCTTCTTAGAGCATTCAATTGCCATTCCAAAATGCATTTT 356 Query 381 tttctttctctttttCAATAATACCAAAGAAGATGATCTGTTTGTAATCTCTTCAGCATC 440 || || ||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||| Sbjct 357 TT-CTCTCT-TTTTTCAATAATACCGAAGAAGAAGATTTGTTTGTAATCTCTTCAGCATC 414 Query 441 AGAGtttttttATCTACTTCGCGTTGTTGAATGTTTTC-CTGCTAGCATTCTTGAATTAT 499 |||||||| ||||||||| ||||||||||||||||| | |||||| |||||||||||| Sbjct 415 AGAGTTTTCC-ATCTACTTCTCGTTGTTGAATGTTTTCAC-GCTAGCGTTCTTGAATTAT 472 Query 500 -T-TTATGATCACTTCTGTTTATTAGCATTCTTGAATCATCTATGATCGATCCTTTTATG 557 | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 473 ATGTTATGATCACTTCTGTTTATTAGCATTCTTGAATCACCTATGATCAATCCTTTTATG 532 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20413240115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5