BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14410.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929227 jgi|Araly1|929227|scaffold_301684.1 1786 0.0
Ahg914559 jgi|Araly1|914559|Al_scaffold_0001_4813 937 0.0
> Ahg929227 jgi|Araly1|929227|scaffold_301684.1
Length=1068
Score = 1786 bits (967), Expect = 0.0
Identities = 1040/1074 (97%), Gaps = 9/1074 (1%)
Strand=Plus/Plus
Query 109 GATCATAATAATCGGTTTCAATGGCGGATCGGAGCAAAGGCTTTATGAGAGCTGAATTCG 168
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 GATCATAATAATCGGTTTCAATGGCGGATCGGAGCAAAGGCTTTATGAGAGATGAATTCG 60
Query 169 TGACCTATGCTTACATTCTTCTCTATATCGCTCTTTCTAGTGGTCAAATCTTCTTCAATA 228
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TGACCTATGCTTACATTCTTCTCTATATCGCCCTTTCTAGTGGTCAAATCTTCTTCAATA 120
Query 229 AGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCC 180
Query 289 ATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTTAAGATTGTGAAGG 348
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 181 ATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTCACCAAAGTTCTTAAGATCGTGAAGG 240
Query 349 TCGAGGAAGGAATGACACTAGAAATATATGTTACGTCAGTTATTCCAATAGGTGCAATGT 408
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 TTGAGGAAGGAATGACACTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGT 300
Query 409 TTGCAATGACCCTCTGGTTGGGAAACACTGCCTACCTCTACATATCAGTTGCATTTGCGC 468
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TTGCGATGACCCTCTGGTTGGGAAACACTGCCTACCTGTACATATCAGTTGCATTTGCGC 360
Query 469 AGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTG 420
Query 529 AAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTTGGTGTTTTAGTAG 588
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 AAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTCGGTGTTTTAGTAG 480
Query 589 CTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTG 540
Query 649 TTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGT 600
Query 709 TAAACCCAATCTCTCTTATGTACTACGTGAG-CCCATGCAGTGCTATCTGCTTGTTTGTG 767
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 601 TAAACCCAATCTCTCTTATGTACTACGTGAGTCCC-TGCAGTGCTATCTGCTTGTTTGTG 659
Query 768 CCGTGGATCTTTCTAGAGAAATCGAAGATAGATGGCAATGGCCCATGGAACTTCCACTTT 827
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 660 CCGTGGATCTTTCTAGAGAAATCGAAGATGGACGGCAATGGCCCATGGAACTTCCACTTT 719
Query 828 GTAGTGTTGACCCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTTCTTGGTG 887
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTGTGTTGACGCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTTCTTGGTG 779
Query 888 ATTTCTCACACGAGTGCTCTCACTATCCGAGTTGCTGGCGTTGTCAAGGATTGGGTGGTT 947
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 ATTTCTCACACGAGCGCTCTCACTATCCGAGTTGCTGGGGTTGTCAAGGATTGGGTGGTT 839
Query 948 GTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGT 1007
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GTCTTGGTATCAGCTCTTCTCTTTGCCGACACAAAACTCACAATCATCAATCTTTTCGGT 899
Query 1008 TACGCCATCGCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCA 1067
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TACGCCATTGCCATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCA 959
Query 1068 TCCAAAGTTGTTACCACAGAAACTCCAGGAGATGCTGAATCAATACCGTTGGTGTCACA- 1126
||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 960 TCCAAAGTT---ACCACAGAAACTTCAGGAGATGGTGAATCAATACCGTTGGTGTCACAG 1016
Query 1127 AGGTAATACTAATACAGAGAGATGATGAT-GTCCGAGAAAATGTAGTTTCTCAT 1179
| ||||||||| ||||||||||||||| | |||||||||||||| |||||||
Sbjct 1017 ACC-AATACTAATTCAGAGAGATGATGATAG-CCGAGAAAATGTAGCTTCTCAT 1068
> Ahg914559 jgi|Araly1|914559|Al_scaffold_0001_4813
Length=999
Score = 937 bits (507), Expect = 0.0
Identities = 773/900 (86%), Gaps = 23/900 (3%)
Strand=Plus/Plus
Query 168 GTGACCTATGCTTACATTCTTCTCTATATCGCTCTTTCTAGTGGTCAAATCTTCTTCAAT 227
||||| ||||||| ||| |||||||| || |||| ||||| ||||||||||||||||||
Sbjct 46 GTGACGTATGCTTCCATCCTTCTCTACATTACTCTATCTAGCGGTCAAATCTTCTTCAAT 105
Query 228 AAGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTC 287
|||||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 106 AAGTGGGTACTGTCATCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTA 165
Query 288 CATATGA-TCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTT-AAGATTGTGA 345
||||||| | ||||||||||| ||||| ||||| || ||||| ||| || ||| | |||
Sbjct 166 CATATGAGT-TTTTCCTCTGTTTTGTGTTTTCTCCTCACCAAGGTT-TTCAAGGTCATGA 223
Query 346 AGGTCGAGGAAGGAATGACACTAGAAATATATGTTACGTCAGTTATTCCAATAGGTGCAA 405
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 224 AGGTTGAGGAAGGAATGACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAA 283
Query 406 TGTTTGCAATGACCCTCTGGTTGGGAAACACTGCCTACCTCTACATATCAGTTGCATTTG 465
||||||||||||| || ||||| ||||||||||| |||||||||||| | |||||||||
Sbjct 284 TGTTTGCAATGACTCTGTGGTTAGGAAACACTGCTTACCTCTACATAACTGTTGCATTTT 343
Query 466 CGCAGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTA-GCTGCTGGA 524
| || ||||||||||| || |||||||||||||||||||| |||||||| | || |||
Sbjct 344 CCCAAATGTTGAAGGCCATTATGCCTGTTGCTGTGTTTATACTTGGAGTTTG-TGTTGGC 402
Query 525 CTTGAAATGATGAGCTGCAGGATGCTTTTGATAATGTCTA-TCATAAGTTTTGGTGTTTT 583
|||||||| |||||||||| ||||||| |||||||||| | |||||||||||||||||||
Sbjct 403 CTTGAAATAATGAGCTGCAAGATGCTTATGATAATGTC-AGTCATAAGTTTTGGTGTTTT 461
Query 584 AGTAGCTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGG 643
||| || |||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 462 AGTCGCATCTTATGGAGAATTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGG 521
Query 644 TGTTGTTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCAT 703
| ||||| |||||| ||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct 522 TATTGTTTCAGAAGCTTTGAGGCTAATCTTAATGGAAATTCTTGTGAAGAGGAAAGGCAT 581
Query 704 CAAGTTAAACCCAATCTCTCTTATGTACTACGTGAGCCCATGCAGTGCTATCTGCTTGTT 763
||| ||||| ||| ||||||||||||||||| ||||||||||||| || || ||||||||
Sbjct 582 CAAATTAAATCCACTCTCTCTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTT 641
Query 764 TGTGCCGTGGATCTTTCTAGAGAAATCGAAGATAGATGGCAATGGCCCATGGAACTTCCA 823
| || ||||| ||||| ||||| |||||||| || || | ||||||||| ||
Sbjct 642 CATACCATGGATATTTCTTGAGAAGTCGAAGATGGA----AA---C--ATGGAACTTTCA 692
Query 824 CT-TTGTAGTGTTGACCCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTT-C 881
| || | ||||||| |||||||| || ||||||||||| ||||| ||||||||||| |
Sbjct 693 -TGTTCTTGTGTTGAGTCTTAATTCGCTATGTACATTTGCTCTCAATTTGTCGGTTTTTC 751
Query 882 TTGGTGATTTCTCACACGAGTGCTCTCACTATCCGAGTTGCTGGCGTTGTCAAGGATTGG 941
||| |||| ||||| || |||||||||||||||||| |||||||||| || || ||||||
Sbjct 752 TTG-TGATATCTCAAACAAGTGCTCTCACTATCCGAATTGCTGGCGTGGTTAAAGATTGG 810
Query 942 GTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCT- 1000
||||||| ||||| ||||| |||||||||||||| || |||||||||||||||||| |
Sbjct 811 TTGGTTGTTTTGGTCTCAGCCCTTCTCTTTGCCGAGACAAAACTCACAATCATCAATTTA 870
Query 1001 TTTCGGTTACGCCATCGCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAA 1060
||| ||||| ||||| || ||||| |||||||| || |||||||||||||||| |||||
Sbjct 871 TTT-GGTTATGCCATTGCCATTGCTGGTGTAGCTGCATATAACAACCATAAGCCAAAGAA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5