BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14410.1 Length=1322 Score E Sequences producing significant alignments: (Bits) Value Ahg929227 jgi|Araly1|929227|scaffold_301684.1 1786 0.0 Ahg914559 jgi|Araly1|914559|Al_scaffold_0001_4813 937 0.0 > Ahg929227 jgi|Araly1|929227|scaffold_301684.1 Length=1068 Score = 1786 bits (967), Expect = 0.0 Identities = 1040/1074 (97%), Gaps = 9/1074 (1%) Strand=Plus/Plus Query 109 GATCATAATAATCGGTTTCAATGGCGGATCGGAGCAAAGGCTTTATGAGAGCTGAATTCG 168 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 GATCATAATAATCGGTTTCAATGGCGGATCGGAGCAAAGGCTTTATGAGAGATGAATTCG 60 Query 169 TGACCTATGCTTACATTCTTCTCTATATCGCTCTTTCTAGTGGTCAAATCTTCTTCAATA 228 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 TGACCTATGCTTACATTCTTCTCTATATCGCCCTTTCTAGTGGTCAAATCTTCTTCAATA 120 Query 229 AGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCC 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCC 180 Query 289 ATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTTAAGATTGTGAAGG 348 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 181 ATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTCACCAAAGTTCTTAAGATCGTGAAGG 240 Query 349 TCGAGGAAGGAATGACACTAGAAATATATGTTACGTCAGTTATTCCAATAGGTGCAATGT 408 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 TTGAGGAAGGAATGACACTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGT 300 Query 409 TTGCAATGACCCTCTGGTTGGGAAACACTGCCTACCTCTACATATCAGTTGCATTTGCGC 468 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 301 TTGCGATGACCCTCTGGTTGGGAAACACTGCCTACCTGTACATATCAGTTGCATTTGCGC 360 Query 469 AGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTG 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTG 420 Query 529 AAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTTGGTGTTTTAGTAG 588 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 421 AAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTCGGTGTTTTAGTAG 480 Query 589 CTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTG 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTG 540 Query 649 TTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGT 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGT 600 Query 709 TAAACCCAATCTCTCTTATGTACTACGTGAG-CCCATGCAGTGCTATCTGCTTGTTTGTG 767 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 601 TAAACCCAATCTCTCTTATGTACTACGTGAGTCCC-TGCAGTGCTATCTGCTTGTTTGTG 659 Query 768 CCGTGGATCTTTCTAGAGAAATCGAAGATAGATGGCAATGGCCCATGGAACTTCCACTTT 827 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 660 CCGTGGATCTTTCTAGAGAAATCGAAGATGGACGGCAATGGCCCATGGAACTTCCACTTT 719 Query 828 GTAGTGTTGACCCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTTCTTGGTG 887 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GTTGTGTTGACGCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTTCTTGGTG 779 Query 888 ATTTCTCACACGAGTGCTCTCACTATCCGAGTTGCTGGCGTTGTCAAGGATTGGGTGGTT 947 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 780 ATTTCTCACACGAGCGCTCTCACTATCCGAGTTGCTGGGGTTGTCAAGGATTGGGTGGTT 839 Query 948 GTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGT 1007 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 840 GTCTTGGTATCAGCTCTTCTCTTTGCCGACACAAAACTCACAATCATCAATCTTTTCGGT 899 Query 1008 TACGCCATCGCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCA 1067 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TACGCCATTGCCATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCA 959 Query 1068 TCCAAAGTTGTTACCACAGAAACTCCAGGAGATGCTGAATCAATACCGTTGGTGTCACA- 1126 ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 960 TCCAAAGTT---ACCACAGAAACTTCAGGAGATGGTGAATCAATACCGTTGGTGTCACAG 1016 Query 1127 AGGTAATACTAATACAGAGAGATGATGAT-GTCCGAGAAAATGTAGTTTCTCAT 1179 | ||||||||| ||||||||||||||| | |||||||||||||| ||||||| Sbjct 1017 ACC-AATACTAATTCAGAGAGATGATGATAG-CCGAGAAAATGTAGCTTCTCAT 1068 > Ahg914559 jgi|Araly1|914559|Al_scaffold_0001_4813 Length=999 Score = 937 bits (507), Expect = 0.0 Identities = 773/900 (86%), Gaps = 23/900 (3%) Strand=Plus/Plus Query 168 GTGACCTATGCTTACATTCTTCTCTATATCGCTCTTTCTAGTGGTCAAATCTTCTTCAAT 227 ||||| ||||||| ||| |||||||| || |||| ||||| |||||||||||||||||| Sbjct 46 GTGACGTATGCTTCCATCCTTCTCTACATTACTCTATCTAGCGGTCAAATCTTCTTCAAT 105 Query 228 AAGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTC 287 |||||||| |||||||||||||||| || ||||||||||| ||||||||||| ||||| Sbjct 106 AAGTGGGTACTGTCATCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTA 165 Query 288 CATATGA-TCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTT-AAGATTGTGA 345 ||||||| | ||||||||||| ||||| ||||| || ||||| ||| || ||| | ||| Sbjct 166 CATATGAGT-TTTTCCTCTGTTTTGTGTTTTCTCCTCACCAAGGTT-TTCAAGGTCATGA 223 Query 346 AGGTCGAGGAAGGAATGACACTAGAAATATATGTTACGTCAGTTATTCCAATAGGTGCAA 405 |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 224 AGGTTGAGGAAGGAATGACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAA 283 Query 406 TGTTTGCAATGACCCTCTGGTTGGGAAACACTGCCTACCTCTACATATCAGTTGCATTTG 465 ||||||||||||| || ||||| ||||||||||| |||||||||||| | ||||||||| Sbjct 284 TGTTTGCAATGACTCTGTGGTTAGGAAACACTGCTTACCTCTACATAACTGTTGCATTTT 343 Query 466 CGCAGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTA-GCTGCTGGA 524 | || ||||||||||| || |||||||||||||||||||| |||||||| | || ||| Sbjct 344 CCCAAATGTTGAAGGCCATTATGCCTGTTGCTGTGTTTATACTTGGAGTTTG-TGTTGGC 402 Query 525 CTTGAAATGATGAGCTGCAGGATGCTTTTGATAATGTCTA-TCATAAGTTTTGGTGTTTT 583 |||||||| |||||||||| ||||||| |||||||||| | ||||||||||||||||||| Sbjct 403 CTTGAAATAATGAGCTGCAAGATGCTTATGATAATGTC-AGTCATAAGTTTTGGTGTTTT 461 Query 584 AGTAGCTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGG 643 ||| || |||||||| |||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 462 AGTCGCATCTTATGGAGAATTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGG 521 Query 644 TGTTGTTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCAT 703 | ||||| |||||| ||||||||||||| |||||| ||||||| |||||||| ||||| Sbjct 522 TATTGTTTCAGAAGCTTTGAGGCTAATCTTAATGGAAATTCTTGTGAAGAGGAAAGGCAT 581 Query 704 CAAGTTAAACCCAATCTCTCTTATGTACTACGTGAGCCCATGCAGTGCTATCTGCTTGTT 763 ||| ||||| ||| ||||||||||||||||| ||||||||||||| || || |||||||| Sbjct 582 CAAATTAAATCCACTCTCTCTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTT 641 Query 764 TGTGCCGTGGATCTTTCTAGAGAAATCGAAGATAGATGGCAATGGCCCATGGAACTTCCA 823 | || ||||| ||||| ||||| |||||||| || || | ||||||||| || Sbjct 642 CATACCATGGATATTTCTTGAGAAGTCGAAGATGGA----AA---C--ATGGAACTTTCA 692 Query 824 CT-TTGTAGTGTTGACCCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTT-C 881 | || | ||||||| |||||||| || ||||||||||| ||||| ||||||||||| | Sbjct 693 -TGTTCTTGTGTTGAGTCTTAATTCGCTATGTACATTTGCTCTCAATTTGTCGGTTTTTC 751 Query 882 TTGGTGATTTCTCACACGAGTGCTCTCACTATCCGAGTTGCTGGCGTTGTCAAGGATTGG 941 ||| |||| ||||| || |||||||||||||||||| |||||||||| || || |||||| Sbjct 752 TTG-TGATATCTCAAACAAGTGCTCTCACTATCCGAATTGCTGGCGTGGTTAAAGATTGG 810 Query 942 GTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCT- 1000 ||||||| ||||| ||||| |||||||||||||| || |||||||||||||||||| | Sbjct 811 TTGGTTGTTTTGGTCTCAGCCCTTCTCTTTGCCGAGACAAAACTCACAATCATCAATTTA 870 Query 1001 TTTCGGTTACGCCATCGCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAA 1060 ||| ||||| ||||| || ||||| |||||||| || |||||||||||||||| ||||| Sbjct 871 TTT-GGTTATGCCATTGCCATTGCTGGTGTAGCTGCATATAACAACCATAAGCCAAAGAA 929 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49445423349 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5