BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14430.1
Length=539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929230 jgi|Araly1|929230|scaffold_301687.1 377 4e-104
> Ahg929230 jgi|Araly1|929230|scaffold_301687.1
Length=276
Score = 377 bits (204), Expect = 4e-104
Identities = 239/256 (93%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 83 CCGGAGGGA-GAATTTTACCGACGATGATCGGGCGACGTGCTGGAACTAATCGAGTCGGT 141
|||| |||| || |||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1 CCGGCGGGAGGAGTTTT-TCGAGGATGATCGGGCGACGTGCTGGAACGAATCGAGTCGGT 59
Query 142 ATGAGGAGAGACGACTCTCTTCTGACTCGGTTTGTTGACTCAGTGTTCTATTTCTTCCGA 201
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 ATGAGAAGAGATGACTCTCTTCTGACTCGGTTTGTTGACTCAGTATTCTATTTCTTCCGA 119
Query 202 TTAGCTGAGTTTGAGATCCTGTTTGTGCTCTTCATGCTTATTACCTACGTTATTTTCAAA 261
|| ||||||||||||||| |||||||||||||||||||||| |||||| | || ||||||
Sbjct 120 TTGGCTGAGTTTGAGATCTTGTTTGTGCTCTTCATGCTTATAACCTACATCATCTTCAAA 179
Query 262 GATCTGACGTCGAGGCCGGAGTATAATCGGATTCTTGTGGAGAAACCCGGTGGATCTGAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATCTGACGTCGAGGCCGGAGTATAATCGGATTCTTGTGGAGAAACCCGGTGGATCTGAC 239
Query 322 ATCTGGCCGTTTTAAA 337
||||||||||| ||||
Sbjct 240 ATCTGGCCGTTCTAAA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19650128335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5