BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14440.1
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478868 jgi|Araly1|478868|fgenesh2_kg.3__1569__AT3G14440.1 3674 0.0
Ahg952338 jgi|Araly1|952338|scaffold_6000006.1 706 0.0
> Ahg478868 jgi|Araly1|478868|fgenesh2_kg.3__1569__AT3G14440.1
Length=2290
Score = 3674 bits (1989), Expect = 0.0
Identities = 2198/2299 (96%), Gaps = 14/2299 (1%)
Strand=Plus/Plus
Query 1 AAACCAActctctcttctctcttctctcctctcttctACAAGAAGaaaaaaaaCAGAGCC 60
|||||||||||||||||||||||||| || | | | ||||| |||||||||||||||
Sbjct 1 AAACCAACTCTCTCTTCTCTCTTCTC-ACT-TGAACAATAAGAAAAAAAAAAACAGAGCC 58
Query 61 TTTACACATCTCAAAATCGAACTTACTTTAACCACCAAATACTGATTGAACACACTTGAA 120
|||||||||||||| ||||||| | ||||| |||||||||||||||| || ||||||
Sbjct 59 TTTACACATCTCAAGATCGAAC-CAATTTAATCACCAAATACTGATTGGACTTTCTTGAA 117
Query 121 AA-ATGGCTTCTTTCACGGCAACGGCTGCGGTTTCTGGGAGATGGCTTGGTGGCAATCAT 179
|| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 118 AACATGGCTTCTTTCACGGCGACGGCTGCGGTTTCTCGGAGATGGGTTGGTGGCAATCAT 177
Query 180 ACTCAGCCGCCATTATCGTCTTCTCAAAGCTCCGACTTGAGTTATTGTAGCTCCTTACCT 239
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 178 ACTCAGCCGCCATTATCGTCTTCCCAAAGCTCCGACTTCAGTTATTGTAGCTCCTTACCT 237
Query 240 ATGGCCAGTCGTGTCACACGTAAGCTCAATGTTTCATCTGCGCTTCACACTCCTCCAGCT 299
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATGACCAGTCGTGTCACACGAAAGCTCAATGTTTCATCTGCGCTTCACACTCCTCCAGCT 297
Query 300 CTTCATTTCCCTAAGCAATCATCAAACTCTCCCGCCATTGTTGTTAAGCCCAAAGCCAAA 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 CTTCATTTCCCTAAGCAATCATCAAACTCTCCCGCCATTGTTGTTAACCCCAAAGCCAAA 357
Query 360 GAATCCAACACTAAACAGATGAATTTGTTCCAGAGAGCGGCGGCGGCAGCGTTGGACGCG 419
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 GAATCCGACACTAAACAGATGAATTTGTTCCAGAGAGCGGCGGCGGCAGCTTTGGACGCG 417
Query 420 GCGGAGGGTTTCCTTGTCAGCCACGAGAAGCTACACCCGCTTCCTAAAACGGCTGATCCT 479
||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||
Sbjct 418 GCGGAGGGTTTCCTTGTGAGCCACGAGAGGCTACACCCTCTTCCTAAAACGTCTGATCCT 477
Query 480 AGTGTTCAGATCGCCGGAAATTTTGCTCCGGTGAATGAACAGCCCGTCCGGCGTAATCTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTGTTCAGATCGCCGGAAATTTTGCTCCGGTGAATGAACAGCCCGTCCGGCGTAATCTT 537
Query 540 CCGGTGGTCGGAAAACTTCCCGATTCCATCAAAGGAGTGTATGTGCGCAACGGAGCTAAC 599
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCGGTGGTCGGAAAAATACCTGATTCCATCAAAGGAGTGTATGTGCGCAACGGAGCTAAC 597
Query 600 CCACTTCACGAGCCGGTGACAGGTCACCACTTCTTCGACGGAGACGGTATGGTTCACGCC 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 CCACTTCACGAGCCGGTGACAGGACACCACTTCTTCGACGGAGACGGTATGGTTCACGCC 657
Query 660 GTCAAATTCGAACACGGTTCAGCTAGCTACGCTTGCCGGTTTACTCAGACTAACCGGTTT 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTCAAATTCGAAGACGGTTCAGCTAGCTACGCTTGCCGGTTTACTCAGACTAACCGGTTT 717
Query 720 GTTCAGGAACGTCAATTGGGTCGACCGGTTTTCCCCAAAGCCATCGGTGAGCTTCACGGC 779
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 GTTCAGGAGCGTGAATTGGGTCGACCGGTTTTCCCCAAAGCTATCGGTGAGCTTCACGGC 777
Query 780 CACACCGGTATTGCCCGACTCATGCTATTCTACGCCAGAGCTGCAGCCGGTATAGTCGAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CACACCGGTATTGCCCGACTCATGCTATTCTACGCCAGAGCTGCAGCCGGTATAGTCGAC 837
Query 840 CCGGCACACGGAACCGGTGTAGCTAACGCCGGTTTGGTCTATTTCAATGGCCGGTTATTG 899
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 838 CCGGCACACGGAACCGGTGTAGCCAACGCCGGTTTGGTCTATTTCAACGGCCGGTTATTG 897
Query 900 GCTATGTCGGAGGATGATTTACCTTACCAAGTTCAGATCACTCCCAATGGAGATTTAAAA 959
|| ||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 898 GCGATGTCGGAGGACGATTTGCCTTACCAAGTTCGGATCACTCCCAGTGGAGATTTAAAA 957
Query 960 ACCGTTGGTCGGTTCGATTTTGATGGACAATTAGAATCCACAATGATTGCCCACCCGAAA 1019
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 958 ACCGTTGGTCGGTTCGATTTTGACGGACAATTGGATTCCACAATGATTGCCCACCCGAAA 1017
Query 1020 GTCGACCCGGAATCCGGTGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTAC 1079
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 GTCGACCCGGAATCCGGTGAACTCTTCGCTTTAAGTTACGACGTCGTTTCAAAGCCTTAC 1077
Query 1080 CTAAAATACTTCCGATTCTCACCGGACGGAACTAAATCACCGGACGTCGAGATTCAGCTT 1139
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTGAAATACTTCCGATTCTCGCCGGACGGAACTAAATCACCGGACGTCGAGATTCAGCTT 1137
Query 1140 GATCAGCCAACGATGATGCACGATTTCGCGATTACAGAGAACTTCGTCGTCG-TACCTGA 1198
|||||||| || |||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 1138 GATCAGCCGACAATGATGCACGATTTCGCGATTACAGAGAACTTCGTCGT-GATACCGGA 1196
Query 1199 CCAGCAAGTCGTTTTCAAGCTGCCGGAGATGATCCGCGGTGGGTCTCCGGTGGTTTACGA 1258
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 CCAGCAAGTCGTTTTCAAGTTGCCGGAGATGATCCGCGGTGGCTCTCCGGTGGTTTACGA 1256
Query 1259 CAAGAACAAGGTCGCAAGATTCGGGATTTTAGACAAATACGCCGAAGATTCATCGAACAT 1318
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1257 CAAGAACAAGGTCTCAAGATTCGGAATTTTAGACAAATACGCCGAAGATTCATCGAATAT 1316
Query 1319 TAAGTGGATTGATGCTCCAGATTGCTTCTGCTTCCATCTCTGGAACGCTTGGGAAGAGCC 1378
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TAAGTGGATTGATGCGCCTGACTGCTTCTGCTTCCATCTCTGGAACGCTTGGGAAGAGCC 1376
Query 1379 AGAAACAGATGAAGTCGTCGTGATAGGGTCCTGTATGACTCCACCAGACTCAATTTTCAA 1438
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1377 AGAAACAGAGGAAGTCGTCGTGATCGGGTCGTGTATGACTCCACCAGACTCAATTTTCAA 1436
Query 1439 CGAGTCTGACGAGAATCTCAAGAGTGTCCTGTCTGAAATCCGCCTGAATCTCAAAACCGG 1498
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 CGAGTCTGACGAGAATCTCAAGAGTGTCCTCTCTGAAATCCGCCTGAATCTCAAAACCGG 1496
Query 1499 TGAATCAACTCGCCGTCCGATCATCTCCAACGAAGATCAACAAGTCAACCTCGAAGCAGG 1558
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1497 TGAATCAACTCGCCGTCCGATCATCGCCGACGAAGATCAACAAGTCAACCTCGAAGCAGG 1556
Query 1559 GATGGTCAACAGAAACATGCTCGGCCGTAAAACCAAATTCGCTTACTTGGCTTTAGCCGA 1618
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1557 GATGGTCAACAGAAACATGCTCGGCCGGAAAACAAAATTCGCTTACTTGGCTTTAGCCGA 1616
Query 1619 GCCGTGGCCTAAAGTCTCAGGATTCGCTAAAGTTGATCTCACTACTGGAGAAGTTAAGAA 1678
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1617 GCCATGGCCTAAAGTCTCAGGATTCGCTAAAGTTGATCTCACTACCGGAGAAGTCAAGAA 1676
Query 1679 ACATCTTTACGGCGATAACCGTTACGGAGGAGAGCCTCTGTTTCTCCCCGGAGAAGGAGG 1738
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ACATCTCTACGGCGATAACCGTTACGGAGGAGAGCCTCTGTTTCTCCCCGGAGAAGGAGG 1736
Query 1739 AGAGGAAGACGAAGGATACATCCTCTGTTTCGTTCACGACGAGAAGACATGGAAATCGGA 1798
||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1737 AGAAGAAGACGAAGGACACATCCTCTGTTTCGTTCACGACGAAAAGACATGGAAATCGGA 1796
Query 1799 GTTACAGATAGTTAACGCCGTTAGCTTAGAGGTTGAAGCAACGGTTAAACTTCCGTCAAG 1858
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1797 GTTACAGATAGTTAACGCCGTTAGCTTGGAGGTTGAAGCAACGGTTAAACTTCCGTCAAG 1856
Query 1859 GGTTCCGTACGGATTTCACGGTACATTCATCGGAGCCGATGATTTGGCGAAGCAGGTCGT 1918
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1857 GGTTCCGTACGGATTTCACGGTACATTCATCGGAGCAGATGATTTGGCTAAGCAGGTCGT 1916
Query 1919 GTGAGTTCTTATGTGTAAATACGCACAAAATACATATACGTGATGAAGAAGCTTCTAGAA 1978
||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1917 GTGAGTTCTTATGTGTATATACACACAAAATACGTATACGTGATGAAGAAGCTTCTAGAA 1976
Query 1979 GGAAAAGAGAGAGCGAGATTTACCAGTGGGATGCTCTGCATATACGTCCCCGGAATCTGC 2038
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 G-AAAAGAGAGAGCGAGATTTACCAGTGGGATGCTCTGCATATACGTCCCCGGAATCTGC 2035
Query 2039 TCCTCTGtttttttttttttgctctgtttctt-gtttgttgtttcttttggggtgcggtt 2097
|||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||
Sbjct 2036 TCCTCTGTTTTTTTTTGT--GCTCTGTTTCTTTGGTTGTTGTTTCTTTTGGGGTGCGGTT 2093
Query 2098 tgctagttccctttttttt-GGGGTCAATCTAGAAATCTGAAAGATTTTGAGGGACCAGC 2156
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TGCTAGTTCCCTTTTTTTTTGGGGTCAATCTAGAAATCTGAAAGATTTTGAGGGACCAGT 2153
Query 2157 TTGTAGCTTTTGGGCTGTAGGGTAGCCTAGCCGTT-CGAGCTCAGCTGGTTTCTGTTATT 2215
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2154 TTGTAGCTTTTGGGCTGTAGGGTAGCCTAGCCGTTTCGAGCTCAGCTGGTTTCTGTTATT 2213
Query 2216 CTTTCACTTATTGTTCATCGTAATGAGAAGTATATAAAATATTAAACAACAAAGATATGT 2275
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 2214 CTTTCACTTATTGTTCATCGTAATGAGAAGTATATAAA-TATTAAACAA-AAAGATATGT 2271
Query 2276 TTGTATATGTGCATGAATT 2294
|| |||||||||||| |||
Sbjct 2272 TTATATATGTGCATGTATT 2290
> Ahg952338 jgi|Araly1|952338|scaffold_6000006.1
Length=1862
Score = 706 bits (382), Expect = 0.0
Identities = 1133/1482 (76%), Gaps = 105/1482 (7%)
Strand=Plus/Plus
Query 456 CCGCTTCCTAAAACGGCTGATCCTAG-TGTTCAGATCGCCGGAAA-TT-TTGCTCCGGTG 512
||||||||||||||||| ||||| | || || || |||||||| || || | |||||
Sbjct 381 CCGCTTCCTAAAACGGCGGATCC-CGCCGTCCAAATAGCCGGAAACTTCTT-C-CCGGT- 436
Query 513 A-ATGAACAGCCCGTCCG-GCGTAATCTTCCGGTGGTC-GGAAAACTTCCCGATTCCA-T 568
| || || || || || || ||| |||||||||| | |||| | | || |||| || |
Sbjct 437 ACCGGAGCAACCAGT-CGTGCATAACCTTCCGGTGG-CTGGAACAGTACCAGATTGCATT 494
Query 569 CAAAGGAGTGTATGTGC-GCAACGGAGCTAACCCACTTCACGAG-CCGGTGACAGGTCAC 626
| ||||||| || || | | |||||||| || || |||||| || || | | || |||
Sbjct 495 C-AAGGAGTTTACGT-CAGAAACGGAGCGAATCCGCTTCAC-AGACCAATCTCCGGGCAC 551
Query 627 CACTTCTTCGACGGAGACGGTATGGTTCACGCCG-TCAAATTCGA-ACACGGTTCAGCTA 684
|| || |||||||||||||||||||||||||| | || || || | ||||||| | ||
Sbjct 552 CATTTATTCGACGGAGACGGTATGGTTCACGCTGTTC-GGTTTGATA-ACGGTTCGGTTA 609
Query 685 GCTACGCTTGCCGGTTTACTC-AGACTAACCGGTTTGTTCAGGAACGTCAATTGGGTCGA 743
|||||||||| |||||||| | | || |||||||| ||||| ||||| |||| |||||
Sbjct 610 GCTACGCTTGTCGGTTTAC-CGAAACAAACCGGTTGGTTCAAGAACGAGAATTTGGTCGC 668
Query 744 CCGGTTTTCCCCAAAGCCATCGGTGAGCTTCACGGCCACACCGGTATTGCCCGA-CTCAT 802
|| |||||||||||||| || || ||||||||||| || || || | || | || ||
Sbjct 669 CCTGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAATCG-CCAAGCTTAT 727
Query 803 GCTATTCTACGCCAGAGCTGC-A-GCCGGTATAGTCGACCCGGCACACGGAAC-CGGTGT 859
||| ||| || || | | || | | ||| ||||||||||| | || || || ||||||
Sbjct 728 GCTCTTCAACACCCGCG-GGCTATTCGGGT-TAGTCGACCCGACCCAAGG-ACTCGGTGT 784
Query 860 AGCTAACGCCGGTTTGGTCTATTTCAATGGCCGGT-TATTGGCTATGTCGGAGGATGATT 918
|||||||||||||| |||||||||||||| | | | || || ||||| || || ||||
Sbjct 785 CGCTAACGCCGGTTTAGTCTATTTCAATGGTC-ATCTCTTAGCAATGTCTGAAGACGATT 843
Query 919 TACCTTACCAAGTTCAGA-TCACTCCCAA-TGGAGATTTAAAAACCGTT--GGTCGGTTC 974
|||| ||||| | ||| | ||||| | || ||||||||| ||| | || ||||||| |
Sbjct 844 TACCGTACCATG-TCAAAGTCACT-CAAACCGGAGATTTAGAAA-C-TTCGGGTCGGTAC 899
Query 975 GATTTTGATGGACAATTAGAATCCACAATGATTGCCCACCCGAAAG-TCGACCCGGAATC 1033
||||| || || || ||| ||||||||||||| ||||||||| ||| ||||||||||| |
Sbjct 900 GATTTCGACGGTCAGTTAAAATCCACAATGATAGCCCACCCG-AAGATCGACCCGGAAAC 958
Query 1034 CGGTGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATACTTCCG 1093
| | || || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 CCGAGAGCTATTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATACTTCAG 1018
Query 1094 ATTCTCA-CCGGACGGA-ACTAAATCACCGGACGTCGAGATTCAGCTTGATCAGCCAACG 1151
|||| || ||| |||| | |||||||| ||||||||||||| ||||||| | ||||||
Sbjct 1019 ATTCACATCCG-ACGGCGAG-AAATCACCAGACGTCGAGATTCCGCTTGATGAACCAACG 1076
Query 1152 ATGATGCACGATTTCGCGATTAC-AGAGAACTTCGTCGTCG-TACCTGACCAGCAAGTCG 1209
||||| ||||||||||| ||||| | |||| ||||| || | | || ||||| ||||| |
Sbjct 1077 ATGATCCACGATTTCGCAATTACTA-AGAATTTCGTAGT-GATCCCAGACCAACAAGTGG 1134
Query 1210 TTTTCAAGCT-GCCGGAGATGATCCGCGGTGGGTCTCCGGTGGTTTACGACAAGAACAAG 1268
||||| | | ||||||||||||| | ||||| |||||||||||||||||| |||| |||
Sbjct 1135 TTTTCC-GATTGCCGGAGATGATCAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1193
Query 1269 GTCGCAAGATTCGGGATTTTAGAC-AAATACGCCGAA-GATTCATCGAAC-ATT-AAGTG 1324
||||||| |||||||| || |||||||| ||| || | ||| | ||| || ||
Sbjct 1194 AAATCAAGATTTGGGATTTT-GAATAAATACGC-GAAAGAGGCTTCGT-CGATTCAA-TG 1249
Query 1325 GATTGATGCT-CCAGATTGCTTCTGCTTCCATCTCTGGAACGCTTGGGAAGAGCCAGAAA 1383
||| || | | |||||||| ||||| || |||||||||||| |||||||||| |||||||
Sbjct 1250 GATCGAAG-TACCAGATTGTTTCTGTTTTCATCTCTGGAACTCTTGGGAAGAACCAGAAA 1308
Query 1384 CAGATGAAGTCGTCGTGATAGGGTCCTGTATGACTCCACCAGACTCAATTTTCAACGAGT 1443
|||| ||||| |||||||| || || || ||||| ||||| || || |||||||||||
Sbjct 1309 CAGACGAAGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCGATTTTCAACGAAC 1368
Query 1444 -CTGACGAGAAT-CT-CAAGAGTGTCCTGTCTGAAATCCGCCTGAATCTCAAAACCGGTG 1500
| ||||| || || || |||| |||| || || | || || || ||||| || |
Sbjct 1369 AC-GACGA-AACGCTTCATT-GTGTTTTGTCGGAGATAAGGCTAAACCTGAAAACAGGGG 1425
Query 1501 AATCAACTCGCCGTCCGATCATCTCCAACGAAGATCAACAAGTCAACCTCGAAGCAGGGA 1560
||||||| || | ||| | || ||| ||| ||| || || |||||||| || |
Sbjct 1426 AATCAACACGTAGACCGGTTATTTCC---GAA---CAA---GTTAATCTCGAAGCCGGTA 1476
Query 1561 TGGTCAACAGAAACATGCTCGGCCGTAAAAC-CAAATTCGCTTACTTGGCTTTAGCCGAG 1619
|||| ||| | || | | || ||||| | || ||||| ||||||||| ||||
Sbjct 1477 TGGTAAACCGGAATTTATTAGGTAAAAAAACACGGTTT-GCTTATTTGGCTTTAACCGAA 1535
Query 1620 CCGTGGCCTAAAGTCTCAGGATTCGCTAAAGTTGATCTCA-CTACTGGAGA-AGTTAAGA 1677
|||||||||||||| || || |||| |||||| || || | | || ||||| | || | |
Sbjct 1536 CCGTGGCCTAAAGTGTCCGGTTTCGTTAAAGTGGA-CTTATCGACCGGAGATA-TTCA-A 1592
Query 1678 AAC-ATCTTTACGGCGATAACCGTTACGGAGGAGAGCCTCTGTTTCT-CC--CCGGAGAA 1733
|| || | || || ||| ||||||||||||||||||||||| || |||| ||
Sbjct 1593 AAGTATATATATGGAGATGGGAAATACGGAGGAGAGCCTCTGTTTCTGCCTTCCGGTGAC 1652
Query 1734 GGAGGAGAGGAAGACGAAGGATACATCCTC-TGTTTCGTTCACGACGAGAAGACATG-GA 1791
|| | | || |||||| || ||||| | |||| ||||||||||||| ||| | | ||
Sbjct 1653 GGTG-A-AG-AAGACGGTGGTTACATTATGGTGTT-CGTTCACGACGAGGAGA-AGGTGA 1707
Query 1792 AATCGGAGTTACAGAT-AGTTAACGCCGTTAGCT-TAGAGG-TTGAAGCAACGGTTAAAC 1848
||||||| | || || | | |||||||||| | | || | ||||||| || |||| |
Sbjct 1708 AATCGGAACTCCAAATCA-TAAACGCCGTTAA-TAT-GAAGCTTGAAGCTACCGTTACGC 1764
Query 1849 TTCCGTCAAGGGTTCCGTACGGATTTC-ACGGTACATTCATC 1889
||||||| || || || || || |||| |||| || ||||||
Sbjct 1765 TTCCGTCGAGAGTGCCTTATGG-TTTCCACGGAACGTTCATC 1805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87074300070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5