BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14450.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478869 jgi|Araly1|478869|fgenesh2_kg.3__1570__AT3G14450.1 1363 0.0
Ahg485298 jgi|Araly1|485298|fgenesh2_kg.5__1290__AT3G49390.2 141 9e-33
> Ahg478869 jgi|Araly1|478869|fgenesh2_kg.3__1570__AT3G14450.1
Length=1014
Score = 1363 bits (738), Expect = 0.0
Identities = 938/1025 (92%), Gaps = 52/1025 (5%)
Strand=Plus/Plus
Query 1 ATGGCTACGGTCACTGAGATGCCCACTGATGTTGTTGTTGTCGACGATGTTAA-GGAAGT 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 ATGGCTACGGTCACTGAGATGCCCACTGATGTTGTTGTTGTCGACGATGTTAATGGAA-T 59
Query 60 TAGTACC-AAA---A--GCGAAAAGATCATCGATGAGGGAATTGAGAAGAGCTCGATCAC 113
||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TAGTACCAAAAGCGATGGCGAAAAGATCATAGATGAGGGAATTGAGAAGAGCTCGATCAC 119
Query 114 G-GATTCTAAAACCGAAACTG-A----A--T------C---T-CGGC-TTGATATGCACA 154
| | |||||||||||| |||| | | | | | || | |||||||||| |
Sbjct 120 GTG-TTCTAAAACCGAGACTGAATCCGAGCTCAAACCCAAATCCGACTTTGATATGCAGA 178
Query 155 AGCTTGTGGCTATGTTCAAGAAACTGAATCCTTTGGCCAAGGAGTTTTTCCCTTCTTACT 214
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 179 AGCTTGTGGCTATGTTCAAGAAACTCAATCCTTTGGCCAAAGAGTTTTTTCCTTCTTACT 238
Query 215 ACGATCCGAAGAAGAACAATCAGGTAGCTAAGGCTAACCAATTTCTGCCGGCTGACGATT 274
| ||||||||||||||| ||||||| | || ||||| |||||||| ||||||||||||
Sbjct 239 ATGATCCGAAGAAGAACCATCAGGTGGGGAAAGCTAATCAATTTCTATCGGCTGACGATT 298
Query 275 TTGAGACCACCAAGAAGCAATCTGGTGAAGAATTTGATCTTGATGCCAAGAAGGATGACA 334
||| |||||||| || |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 299 TTGCCACCACCAATAAACAATCTGGTGAAGAATTTGATCCTGATGCCAAAAAGGATGACA 358
Query 335 ATACCCGCAAGAGAAGAAACTATAGCCAAGGGAGAAGGAGGTTAACTGGAAGAATTTCTA 394
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 ATACGCGCAAGAGAAGAAACTATAGCCAAGGGAGGAGGAGGTTAACTGGAAGAATTTCTA 418
Query 395 AGGCTCAAAGAGAGGATAGTATTAGAAGAACAGTTTATGTTTCTGACATTGACCAGAGTG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGGCTCAAAGAGAGGATAGTATTAGAAGAACAGTTTATGTTTCTGACATTGACCAGAGTG 478
Query 455 TGACTGAGGAGGGTCTTGCTGGCTTGTTTAGTAACTGTGGACAAGTTGTTGACTGTAGAA 514
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 479 TGACTGAGGAGGGTCTTGCAGGCTTGTTTAGTAACTGTGGACAAGTTGTTGACTGTCGAA 538
Query 515 TTTGTGGCGATCCACATTCGGTTCTTCGATTTGCGTTTGTTGAGTTTGCTGATGACCAGG 574
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTGTGGCGATCCACATTCAGTTCTTCGATTTGCGTTTGTTGAGTTTGCTGATGACCAGG 598
Query 575 GCGCAC-ATGAAGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTC 633
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCGCACGA-GAAGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTC 657
Query 634 TTACCCTCAAAAACTGCCATCCTACCAGTGAATCCCACATTTCTTCCAAGG-T-----C- 686
| |||| ||||||| |||||||||||||||||||||||||||||| | |
Sbjct 658 --A-----AAAA-CTGCCATTCTACCAGTGAATCCCACATTTCTTCCAAGGGTAAATGCT 709
Query 687 ---A----GAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACCAACATCGACA 739
| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 710 CCGATTCAGAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACAAATATCGACA 769
Query 740 AGAAAGTTTCTCAAGCTGATGTGAGAAACTTCTTTGAATCTGCATGTGGTGAGGTAACTC 799
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 AGAAGGTTTCTCAAGCTGATGTGAGAAACTTCTTTGAGTCTGCATGTGGTGAGGTAACTC 829
Query 800 GTCTGAGGCTTCTTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GTCTGAGGCTTCTTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTC 889
Query 860 TGGCAGATAGTGCACTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGA 919
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 890 TGGCAGATAGTGCACTTAGGGCGCTCAATTGCAGCGGGATGGTCGTTGGATCCCAACCGA 949
Query 920 TAAGGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TAAGGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAA 1009
Query 980 ACTAG 984
|||||
Sbjct 1010 ACTAG 1014
> Ahg485298 jgi|Araly1|485298|fgenesh2_kg.5__1290__AT3G49390.2
Length=1666
Score = 141 bits (76), Expect = 9e-33
Identities = 420/580 (72%), Gaps = 47/580 (8%)
Strand=Plus/Plus
Query 396 GGCTCA-AAGAGAGGATAGT-ATTAGAAGAACAGTTTATGTTTCTGACATTGACC-AGAG 452
|||||| ||| || ||| || || || ||||| || ||||| || |||||||||| | ||
Sbjct 743 GGCTCAGAAG-GACGAT-GTAATCAGGAGAACTGTATATGTCTCCGACATTGACCAACAG 800
Query 453 TGTGACTGAGGAGGGTCTTGCTGGCT-TGTTTAGTAACTGTGGACAAGTTGTTGACTGTA 511
|| || |||||| || || || | | |||| ||| |||||||| |||||||| |||
Sbjct 801 -GTTACCGAGGAGAACCTCGCAGG-TGTCTTTATTAATTGTGGACAGGTTGTTGATTGTC 858
Query 512 GAATTTGTGGCGATCCACATTCGGTTCTTCGATTTGCGTTT-GTTGAGTTTGCTGATGAC 570
| | || || || ||| |||| || ||||| ||||| ||| |||| ||| | ||||
Sbjct 859 GTGTATGCGGTGACCCAAATTCTGTCCTTCGTTTTGC-TTTCATTGAATTTACCAATGAA 917
Query 571 CAGGGCGCACA-TGAAGCTTTAAGCCT-TGGTGGAACAATGCTCGGGTTCTA-CC-CGGT 626
|||| || | | ||||| ||| | | | || || ||||||| || || || | |
Sbjct 918 GAGGGAGC-TAGGGCTGCTTTGAGCATGTCG-GGTACTGTGCTCGGTTTTTATCCTC-TT 974
Query 627 GAGGGTCTTACCCTCAAAAACTGCCA-T-CCTACCAGTGAATCCC-ACATTTCTTCCAAG 683
||| |||| || || ||||| || | | || || || || ||| || |||||||||||
Sbjct 975 AAGGTTCTT-CCTTCCAAAACCGCTATTGCC--CCTGTTAA-CCCAACTTTTCTTCCAAG 1030
Query 684 GTCAGAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACCAACATCGACAAGAA 743
|| || ||||| | ||||||||| ||||| | || || |||||||| ||||||
Sbjct 1031 ATCTGAGGATGAGCGTGAGATGTGCGTTAGGACTGTTTACTGTACCAACATTGACAAG-C 1089
Query 744 AG-TTTCTCAAGCTGA-TGTGAGAA-ACTTCTTTGAATCTGC-ATGTGGTGAGG-TAACT 798
| | ||||| ||| | ||| || |||||||||| ||| || || |||| | | |
Sbjct 1090 GGATCACTCAAATTGACT-TGA-AAGGCTTCTTTGAA-ATGCTTTGCGGGGAGGTTCA-T 1145
Query 799 CGTCTGAGGCTTCTTGGCGATCAAT-TGCATTC-AACTCGCATAGCTTTTGTTGAATTTG 856
||||||| | ||||| || | || || | ||| || || ||||||||||| ||||
Sbjct 1146 CGTCTGA-G--ACTTGGAGA-CTATCACCA-CCAAACCCGTATTGCTTTTGTTGAGTTTG 1200
Query 857 CTCTGGCAGATAGTGCACTTAGC-GCGC-TCAATTGCAGCGGAATGGTCGTT-GGATCAC 913
| |||| || |||||| || || |||| || | ||||| || || ||| || || |||
Sbjct 1201 CGATGGCGGAAAGTGCAATT-GCTGCGCTTC-ACTGCAGTGGTATTGTC-TTGGGGGCAC 1257
Query 914 AACCGATAAGGGTAAGTCCATCAAAGACACCAGTGAGGCC 953
|| ||||||||||||||||||||||||||||| |||||
Sbjct 1258 TCCCAATAAGGGTAAGTCCATCAAAGACACCAGTAAGGCC 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5