BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14470.1
Length=3308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478871 jgi|Araly1|478871|fgenesh2_kg.3__1572__AT3G14470.1 4667 0.0
> Ahg478871 jgi|Araly1|478871|fgenesh2_kg.3__1572__AT3G14470.1
Length=3191
Score = 4667 bits (2527), Expect = 0.0
Identities = 2970/3182 (93%), Gaps = 38/3182 (1%)
Strand=Plus/Plus
Query 1 ATGACCGGCATAGGAGAGATGTTCCT-TGCAGCTTTTTTACAAGCTCTCTTCCAGACGCT 59
||||||||||||| || |||||| || | | |||||||||||||||||||||||||||||
Sbjct 1 ATGACCGGCATAGAAGGGATGTTTCTCT-CCGCTTTTTTACAAGCTCTCTTCCAGACGCT 59
Query 60 GGTGTCTGAACCTTTCAGGAGCTTCTTCAAGAGGCGAGAACTGAATGAGAATTTACTCGA 119
| ||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 60 GCTGTCTGAGCCTTTCAAGAGCTTCTTCAAGAGGCGAGAACTGAATGAGGATGTACTCGA 119
Query 120 GAGGCTCAGCACTGCGTTGTTGACAATAACTGCTGTTCTGATAGATGCAGAGGAGAAGCA 179
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 120 GAGGCTCAGCACTGCGTTGTTGACAATAACTGCTGTTCTGATTGATGCGGAGGAGAAGCA 179
Query 180 GATTACAAATCCGGTGGTGGAAAAATGGGTTAACGAGCTGAGAGATGTTGTTTACCATGC 239
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GATTACAAACCCGGTGGTGGAAAAATGGGTCAACGAGCTGAGAGATGTTGTTTACCATGC 239
Query 240 TGAAGATGCTCTTGATGATATTGCTACAGAAGCTCTGCGTCTCAACATAGGAGCTGAATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAAGATGCTCTTGATGATATTGCTACAGAAGCTCTGCGTCTCAACATAGGAGCTGAATC 299
Query 300 TTCTTCCTCCAACAGGCTGAGACAGCTTCGTGGCAGAATGTCCCTGGGAGATTTTCTTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTTCCTCCAACAGGCTGAGACAGCTTCGTGGCAGAATGTCCCTGGGAGATTTTCTTGA 359
Query 360 TGGGAACAGTGAACATTTGGAGACCCGGCTTGAGAAGGTCACAATTAGGCTCGAGCGTTT 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGGGAACAGTGAACATTTGGAGACCCGGCTTGAGAAGGTCACAATAAGGCTCGAGCGTTT 419
Query 420 AGCCTCACAAAGAAATATCCTGGGTTTGAAAGAGCTTACTGCAATGATACCCAAACAAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCCTCACAAAGAAATATCCTGGGTTTGAAAGAGCTTACTGCAATGATACCCAAACAAAG 479
Query 480 GTTGCCAACAACATCTCTTGTGGATGAATCTGAAGTGTTTGGTAGAGAC-GATGATAAAG 538
||||||||| ||||||||||||||||||||| ||||||||||||||| | || |||||||
Sbjct 480 GTTGCCAACGACATCTCTTGTGGATGAATCTCAAGTGTTTGGTAGAG-CTGACGATAAAG 538
Query 539 ATGAGATAATGAGATTCTTGATTCCAGAGAATGGGAAA-GACAACG-GTATTACCGTTGT 596
||||||| || ||||| |||||||| || ||||| ||| || ||| || | ||||||||
Sbjct 539 ATGAGATCATAAGATTTTTGATTCCTGAAAATGG-AAACGATAACCAGT-TAACCGTTGT 596
Query 597 AGCTATTGTTGGAATTGGAGGGGTTGGAAAAACCACACTTTCACAACTCCTTTACAATGA 656
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 597 AGCTATTGTTGGAACTGGAGGGGTTGGCAAAACCACACTTTCACAACTCCTATACAATGA 656
Query 657 TCAACATGTTCGGAGTTATTTTGGAACAAAAGTCTGGGCTCATGTCTCAGAGGAGTTTGA 716
||| | ||||| |||| |||||||||| | |||||||||||||||||| || ||||||||
Sbjct 657 TCAGCGTGTTCAGAGTCATTTTGGAACTAGAGTCTGGGCTCATGTCTCTGAAGAGTTTGA 716
Query 717 CGTTTTTAAGATCACCAAAAAGGTTTATGAATCTGTTACTTCCCGGCCTTGTGAATTCAC 776
|||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 717 CGTTTTTAAGATTACCAAAAAGGTTTATGAGTCCGTTACTTCCCGACCTTGCGAATTCAC 776
Query 777 TGACCTGGATGTACTTCAAGTCAAATTGAAGGAGAGATTAACAGGAACAGGCTTACCGTT 836
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 CGACCTGGATGTACTTCAAGTCAAATTGAAGGAGAGGTTAACAGGAACAGGCTTACCGTT 836
Query 837 TCTGCTTGTTCTAGATGATCTGTGGAATGAAAATTTTGCGGATTGGGATCTTCTACGCCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTGCTTGTTCTAGATGATCTGTGGAATGAAAATTTTGCGGATTGGGATCTTCTACGCCA 896
Query 897 ACCTTTTATACATGCTGCTCAAGGGAGCCAGATTCTTGTGACAACACGAAGCCAACGTGT 956
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 ACCTTTTATACATGCTGCTCAAGGGAGCCATATTCTTGTGACAACACGAAGCCAACGTGT 956
Query 957 TGCATCCATAATGTGTGCCGTCCATGTACACAACCTTCAGCCATTATCTGATGGAGATTG 1016
||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||
Sbjct 957 TGCATCCATTATGTGTGCTGTCCATGTACATAACCTTCAGCCACTATCTGATGGAGATTG 1016
Query 1017 CTGGTCGTTGTTTATGAAAACTGTATTTGGTAATCAAGAACCGTGCCTAAATCGAGAAAT 1076
||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct 1017 CTGGTTGTTGTTTATAAAAACTGTATTTGGTAATCAAGATCCGTGCCTAGATCAAGAAAT 1076
Query 1077 TGGAGATCTTGCTGAAAGGATAGTGCACAAATGCCGCGGTCTGCCTTTGGCTGTGAAAAC 1136
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1077 TGGAGATCTTGCGGAAAGGATAGTGCACAAGTGCCGCGGCCTGCCTTTGGCTGTGAAAAC 1136
Query 1137 ACTTGGTGGCGTTCTACGGTTTGAAGGAAAAGTCATAGAATGGGAGAGAGTTCTAAGCAG 1196
||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 1137 ACTTGGTGGTGTTCTACGGTTTGAAGGTAAAGTCAAAGAATGGGAGAGAGTTTTAAGCAG 1196
Query 1197 CCGGATTTGGGATCTTCCAGCTGATAAGAGCAATCTACTTCCAGTTTTACGTGTAAGCTA 1256
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1197 CAGGATTTGGGATCTTCCAGCTGATAAGAGCAATCTACTTCCAGTTTTACGGGTAAGCTA 1256
Query 1257 TTACTACCTTCCAGCTCACTTGAAACGATGTTTTGCCTATTGCTCGATATTTCCCAAAGG 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 TTACTACCTTCCAGCTCACTTGAAACGATGTTTTGCCTATTGCTCGATATTTCCAAAAGG 1316
Query 1317 GCATGCATTTGAGAAGGACAAGGTAGTTCTTTTGTGGATGGCAGAAGGTTTCTTGCAACA 1376
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1317 GCATGCATTTGAGAAGGAAAAGGTAGTTCTTTTGTGGATGGCAGAAGGTTTTTTGCAACA 1376
Query 1377 GACGAGAAGCAGTAAGAATCTAGAAGAGCTCGG-GAATGAGTACTTTTCTGAATTAGAAT 1435
|||||||||| ||| ||||||||||| ||||| || ||||||||||| |||| || |||
Sbjct 1377 AACGAGAAGCAATAAAAATCTAGAAGAACTCGGAGA-TGAGTACTTTTATGAACTACAAT 1435
Query 1436 CAAGGTCACTTCTTCAAAAGACCAAAACAAGATATATAATGCATGATTTTATCAATGAGC 1495
||||||| ||| |||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1436 CAAGGTCGCTTTTTCAAAAGACCAAAACGAGATATATTATGCATGACTTTATCAATGAGC 1495
Query 1496 TGGCTCAGTTTGCTTCAGGAGAGTTCAGCTCGAAGTTTGAAGATGGATGCAAACTTCAGG 1555
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TCTCTCAGTTTGCTTCTGGAGAGTTCAGCTCGAAGTTTGAAGATGGATGCAAACTTCAGG 1555
Query 1556 TTTCAGAAAGGACCAGATATTTATCGTACCTACGAGATAATTATGCAGAGCCTATGGAGT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TTTCAGAAAGGACCAGATATTTATCGTACCTACGAGATAATTATGCAGAGCCTATGGAGT 1615
Query 1616 TTGAGGCTCTACGTGAGGTCAAGTTTCTCAGAACTTTTCTACCACTCAGCCTCACAAATT 1675
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TTGAGGCTCTTCGCGAGGTCAAGTTTCTCAGAACTTTTCTACCACTCAGCCTCACAAATT 1675
Query 1676 CTTCTCGGTCATGCTGCTTAGAT-CAAATGGTCAGTGAGAAGTTACTTCCAACGCTCACC 1734
||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||| || |||
Sbjct 1676 CTTCTCGATCATGCTGCTTAGATACAA-TGGTCAGCGAGAAGTTACTTCCAACACTTACC 1734
Query 1735 CGCTTGCGTGTTTTGTCTTTATCACATTACAAGATCGCGAGGCTGCCGCCAGATTTTTTC 1794
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CGCTTGCGTGTTTTGTCCTTATCACATTACAAGATCGCGAGGCTGCCGCCAGATTTTTTC 1794
Query 1795 AAGAACATTA-GCCATGCTCGGTTTTTGGATCTCTCTCGCACTGAACTCGAGAAACTTCC 1853
| |||| ||| |||||| |||||||||||||||||||| ||||||||| || ||||||||
Sbjct 1795 AGGAAC-TTAAGCCATGTTCGGTTTTTGGATCTCTCTCTCACTGAACTAGAAAAACTTCC 1853
Query 1854 GAAATCCCTTTGTTATATGTACAACCTCCAGACACTTCTTC-TCTCCTACTGTTCAAGTC 1912
||||||||||||||||||||||||||||||||||||| || ||||||||||||| || |
Sbjct 1854 GAAATCCCTTTGTTATATGTACAACCTCCAGACACTT-TTGATCTCCTACTGTTCTAGCC 1912
Query 1913 TGAAGGAGCTGCCTACAGATATTAGCAACCTCATCAATTTGCGGTATCTTGATCTGATTG 1972
|||||||||| |||||||| |||||||||||||||||| |||| ||||||||||| ||||
Sbjct 1913 TGAAGGAGCTACCTACAGACATTAGCAACCTCATCAATCTGCGTTATCTTGATCTAATTG 1972
Query 1973 GGACGAAGCTAAGACAAATGCCGCGGAGATTTGGTAGATTGAAGAGTCTCCAGACTCTTA 2032
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1973 GGACGAAGCTAAGACAAATGCCGCGGAGATTTGGTAGATTGAAGAGCCTCCAGACTCTTA 2032
Query 2033 CAACATTTTTCGTGAGTGCTAGTGACGGGTCAAGGATTTCTGAACTTGGAGGGCTTCATG 2092
|||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 2033 CAACTTTTTTCGTGAGTGCTAGTGACGGGGCAAGGATTTGTGAACTTGGAGAGCTTCATG 2092
Query 2093 ACCTTCATGGAAAACTTAAAATAGTTGAGCTACAACGAGTTGTGGATGTTGCTGATGCTG 2152
| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||
Sbjct 2093 ATCTTCATGGAAAACTCAAAATAATTGAGCTACAGCGAGTTGTGGATGTTGCTGATGCTG 2152
Query 2153 CAGAAGCAAATTTAAACAGCAAGAAACATCTGAGGGAGATAGATTTTGTCTGGAGAACTG 2212
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2153 CAGGAGCAAATTTAAACAGCAAGAAACATCTGAAGGAGATAGATTTTGTCTGGAGAACTG 2212
Query 2213 GATCTAGTAGCTCAGAGAACAACACAAATCCTCACAGGACGCAAAACGAAGCTGAAGTGT 2272
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2213 GATCTAGTAGCTCAGAGAGCAACACAAATCCTCACAGGACGCAAAACGAAGCTGAAGTTT 2272
Query 2273 TTGAGAAGTTACGCCCACATCGTCATATTGAGAAACTTGCCATTGAGAGATACAAAGGAA 2332
|||||||||||||||| ||| ||| ||| |||||||| |||||||||||||||||||||
Sbjct 2273 TTGAGAAGTTACGCCCGCATAGTCGTATCGAGAAACTCACCATTGAGAGATACAAAGGAA 2332
Query 2333 GAAGGTTTCC-AGATTGGTTGAGTGATCCTTCGTTCTCTAGAATTGTGTGTATACGCCTC 2391
|| ||||||| | | ||||| |||||| |||| ||||| ||||| ||||| |||| ||||
Sbjct 2333 GATGGTTTCCTA-AGTGGTTAAGTGATTCTTCATTCTCAAGAATCGTGTGCATACACCTC 2391
Query 2392 AGAGAATGTCAATACTGTACCTCCTTGCCATCTCTTGGTCAACTACCATGTCTCAAAGAA 2451
||||| |||||||||||| |||||||||||||||| |||||||||||| |||| ||||||
Sbjct 2392 AGAGAGTGTCAATACTGTTCCTCCTTGCCATCTCTCGGTCAACTACCAGGTCTTAAAGAA 2451
Query 2452 CTTCACATTTCAGGAATGGTCGGGCTTC-AAAGCATAGGTCGCAAGTTCTACTTCAGCGA 2510
||| ||||||||||||||| |||| || ||| |||||||| | ||||||| ||||||||
Sbjct 2452 CTTAACATTTCAGGAATGGCCGGGATTAGAAA-CATAGGTCCCGAGTTCTATTTCAGCGA 2510
Query 2511 TCAACAACTGCGTGATCA-AGACCAACAGCCGTTTAGATCACTTGAAACACTGCGATTTG 2569
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 TCAACAACTGCGGGAT-AGAGACCAACAGCCGTTTAGATCACTTGAAACACTGCGATTTG 2569
Query 2570 ATAACCTGCCAGATTGGCAAGAGTGGTTAGACGTAAGGGTCACAAGAGGAGACTTGTTCC 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2570 ATAACCTGCCAGATTGGCAAGAGTGGTTAGACGTAAGGGTCACAAGAGGAGACTTGTTCC 2629
Query 2630 CTTCTCTCAAGAAACTTTTCATACTGAGATGTCCAGAGCTAACCGGGACTCTACCTACCT 2689
|||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 2630 CTTCTCTCAAGAAACTTTTCATACTGAGATGTCCAGCGCTAACGGGGAATCTACCTACCT 2689
Query 2690 TTCTTCCTTCTCTGATCTCACTTCACATCTATAAATGTGGCCTCTTAGATTTCCAGCCAG 2749
||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||||||||||
Sbjct 2690 TTCTTCCTTCTCTGAGCTCTCTTCATGTCTATAAATGCGGCTTCTTAGATTTCCAGCCAG 2749
Query 2750 ATCACCACGAATACAGTTACAGGAACCTTCAAACGCTAAGCATAAAAAGCAGCTGTGACA 2809
| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2750 ACCACCACGAATACAG-----G-AACCTTCAAACGCTAAGCATAAAAAGCAGCTGTGACT 2803
Query 2810 CTCTCGTTA-AGTTTCCTTTAAACCATTTCGCCAATCTCGACAAGCTTGAAGTCGATCAG 2868
||||||||| | |||||||||| ||| |||||||| ||||| ||||||||| |||||||
Sbjct 2804 CTCTCGTTACA-TTTCCTTTAAGCCAGTTCGCCAAGCTCGAAAAGCTTGAAATCGATCAA 2862
Query 2869 TGCACATCCTTGTACTCTCTTGAGCTCTCAAATGAGCATTTGCGTGGTCCGAATGCCCTA 2928
|||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 2863 TGCACATCCTTGCACTCTCTTCAGCTCTCAAATGAGCATTTGCATGGTCTGAATGCCCTA 2922
Query 2929 AGGAACCTGAGAATCAATGACTGTCAGAACCTGCAGCTTCTTCC-GAAACTAAACGCT-C 2986
|| |||||||||||||||||||||||||| ||||||| |||||| || |||| ||| |
Sbjct 2923 AGAAACCTGAGAATCAATGACTGTCAGAATCTGCAGCGTCTTCCAGAG-CTAA--GCTTC 2979
Query 2987 -TGCCTCAA-AACTTACAGGTCACGATCACGAACTGCAGGTATCTCAGACAGCCAATGGA 3044
|| ||||| || || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2980 CTGTCTCAACAA-TTGCAGGTCACGATCACGAACTGCAGGTATCTCAGACAGTCAATGGA 3038
Query 3045 ACAGCAGCCTCAATATCATCATCCTCAGTTTCATCTTCCAAGATCAAACGTGTCAGGCTC 3104
||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 3039 ACAACAGCATCAATATCATCATCCTCAGTTTCATCTTCCTAGATCAAACGTTTCAGGCTC 3098
Query 3105 ACCGAAGTCTCATGGTTCACACAGATCATATGATTCACGTTCATCTTCAAGATATGACTA 3164
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3099 ACCGAGGTCTCATGGTTCACACAGATCATATGATTCACGTTCATCTTCAAGATATGACTA 3158
Query 3165 AA 3166
||
Sbjct 3159 AA 3160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124866897013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5