BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14490.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904386 jgi|Araly1|904386|Al_scaffold_0003_1514 2385 0.0
Ahg341583 jgi|Araly1|341583|fgenesh1_pg.C_scaffold_3001346 418 7e-116
Ahg891372 jgi|Araly1|891372|Al_scaffold_0007_3358 222 6e-57
> Ahg904386 jgi|Araly1|904386|Al_scaffold_0003_1514
Length=1809
Score = 2385 bits (1291), Expect = 0.0
Identities = 1645/1817 (91%), Gaps = 19/1817 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCAACAAGAACGAGT--TT-TGGTCTTCATAACGCCCCTCTCTGCCC-CACA-A 55
||||||||||||||||||| | || |||||| | ||||| |||||||| ||| || | |
Sbjct 1 ATGGAAGCAACAAGAACGATTAATTATGGTCTCCCTAACGTCCCTCTCT-CCCTCA-AGA 58
Query 56 CAAACCCCTCTCTTTTTCCTCGGCGTTGGCTTCACAAGCACACTCT-TTCCTTGAAACCG 114
| || |||||| ||||||||||||||| ||||||| |||||||| || ||||||||||
Sbjct 59 CCAATTTCTCTCTCTTTCCTCGGCGTTGGATTCACAACCACACTCTCTT-CTTGAAACCG 117
Query 115 GCAAAACAACACCACTTGGTCTGCGTTAGGGCTACTGAGAGTAATGATAATCTTGAAAGT 174
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 118 ACAAAAGAACACCACTTGGTCTGCGTTAGGGCTACTGAGAGTAATGCTGATCTTGAAAGT 177
Query 175 AGTCGTCCCTTGGCACACTTTTCTCCCACTCTTTGGGGAGATCACTTCCTTTCTGTTCCC 234
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 AGTCGGCCCTTGGCACACTTTTCTCCCACTCTTTGGGGAGATCACTTCCTTTCTGTCCCC 237
Query 235 CTCCATGTCGCTGAATTTGATGATTTCTCAAGAGAGATTGAAGTGACGATGAAGCCAAAA 294
||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 238 CTCGATGTCGCTGAATTTGCTGATTTCTCAAGAGAGATGGAAGTGACGATGAAGCCAAAA 297
Query 295 GTGAGAGACATGCTCAAGTCTTCCAAAAACAGCGACAATGAGAGGATCCGTCTCATCCAT 354
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 298 GTGAGAAACATGCTCATGTCTTCCAAAAACGGCGACAATGAGAGGATCCGTCTCATTTAT 357
Query 355 TTGCTAATGAACCTCGGAATCGCATATCATTTCGAGATTGAGATTGATGAGATTCTTGGC 414
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGCTCATTAACCTCGGAATCGCATATCATTTCGAGATTGAGATTGATGAGATTCTTGGC 417
Query 415 CAAGCTTTTGGGAATTTGGACGATATAATAGCCAAGGAAAATGATTTGGAAACAATCTCC 474
|||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||
Sbjct 418 CAAGCTTTTGGGAATTTGGAGGACATGATAGCCAAGCAAAATGATTTGGAAACAATCTCC 477
Query 475 ACCATGTTTGAGGTTTTCAGACTACGCGGTTACTATATGCCTTGCTATGCATTCAATAGA 534
| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 478 ATCATGTTTGAGGTTTTCAGACTACGCGGTTACTATATGCCTTGCGATGCATTCTATAGA 537
Query 535 TTCAAAGGTGAAGATGGGAGGTTCAAGGAAAGTCTAGCTGAGGATATTAGAGGAATGCTA 594
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 538 TTCAAAGGTGAAGATGGTAGGTTCAAGGAAAGTCTAGCTGAAGATATTAGAGGGATGCTA 597
Query 595 CAGTTGTACGAAGCAGCACATCTCGGGACACCATCTGAAGATATTATGGACGAAGCATTG 654
||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 598 CAGCTGTACGAAGCAGCACATCTCGCGACACCATCTGAAGATATAATGGACGAAGCATTG 657
Query 655 AGCTTCACTCGGTATCGCTTAGAGTCGTTGACAAGTAATCACACAGCAACTGCTAGTCCC 714
|| ||||||||||||| ||| ||||| |||| | || ||||| ||| | |||||| |||
Sbjct 658 AGTTTCACTCGGTATCACTTGGAGTCATTGATAGGTCATCACGCAGTTAGTGCTAGCCCC 717
Query 715 CATCTCTCTAAACATATACAAAACGCACT-ATATAGAGCTCGATATCATAACTTGGAGAT 773
||||||||||| |||||| ||||| || | | | |||||||||||||||||| |||||||
Sbjct 718 CATCTCTCTAAGCATATAAAAAACACATTGA-ACAGAGCTCGATATCATAACATGGAGAT 776
Query 774 ATTAGTCGCAAGAGAATATATCTCTTTCTACGAACAAGAAGAAGATCATGACGAGACGCT 833
| ||||| ||||||||| ||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 777 AATAGTCTCAAGAGAATTTATCTCTTTCTACGATCAAGAAGAAGATCACAACGAGACCCT 836
Query 834 GCTCAAGTTTGCAAAACTCAACTTCAACTATTGCCAGCTACATTATATCCAAGAGCTAAA 893
||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct 837 GCTCAAGTTTGCAAAGCTCAACTTTAATTATTGCCAGCTTCATTACATCCAAGAGCTAAA 896
Query 894 AGATCTGACCAAATGGTGGAAGGAGCTAGATCTTGCATCTAAGCTGCCTTACATCAGGGA 953
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 897 AGATCTGACCAAATGGTGGAAGGAGTTAGATCTTGCATCTAAGCTACCTTATATCAGGGA 956
Query 954 CAGAATTGTAGAGGTCTACTTTGGGGCACTCGCATTGTATTTTGAGCCACGGTATTCACT 1013
|||||||||||||||||| |||||| ||||| || ||||||||||||| |||||||| |
Sbjct 957 CAGAATTGTAGAGGTCTATTTTGGGACACTCACAATGTATTTTGAGCCGCGGTATTCGTT 1016
Query 1014 AGGGAGAATTATAGTCACTAAAATTACCATGATTGTGACTGTTTTTAATGATACATGTGA 1073
||||||| ||||||||||||| |||||||| ||| ||||||||| ||||| ||||||||
Sbjct 1017 TGGGAGAAATATAGTCACTAAACTTACCATGCTTGCGACTGTTTTGAATGACACATGTGA 1076
Query 1074 TGCATATGGTACTCTTCCTGAAGTTACAAGCCTCGTTGATTCTTTCCAAAGGTGGGATCT 1133
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1077 TGCATATGGAACTCTTCCTGAAGTTACAAGTCTCATTGATTCTTTCCAAAGGTGGGATCT 1136
Query 1134 TGGGGACA-TAGAAAAGCTACCAAGTTATGTAAAAATCGTCTTTCGAGGTGTATTTGAAA 1192
|||||| | | |||||||||||||| ||| ||| ||||||||||||| || | ||||| |
Sbjct 1137 TGGGGAAACT-GAAAAGCTACCAAGCTATATAAGAATCGTCTTTCGAAGTTTGTTTGATA 1195
Query 1193 CTTTAGAAGAGATTGAACAAGAAATGAGGCCAC-AGGGAAGGTCACGCATTGTGCAAGTA 1251
||||||||||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||||
Sbjct 1196 CTTTAGAAGAGATTGAACAAGAAATAAGGCCACGAGG-AAGATCACGCAGTGTGCAAGTA 1254
Query 1252 GCGGTAGATGAGATCAAGAAGTTGGGGAAAGCATACTTGGCTATCTCGAAATGGGCACGC 1311
|| |||||| ||| || ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1255 GCCATAGATGCGATGAAAAAGTTGGGGAAAGCATACTTGGCCATCGCAAAATGGGCACGC 1314
Query 1312 GCAAGTCACGTGCCAACCTTTGAGGAGTACATGGAGTTTGGTATGCAGACGTCAATGGAT 1371
||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||||
Sbjct 1315 GCAAGTCACGTGCCAACCTTTGAGGAGTATATGGAGTTTGCAATGCAAACATCAATGGAT 1374
Query 1372 CATTTTGCAGCCTATAGCTTTATCGCGATGGAAGATTGTGATGAGAATCAAACGTGCGAG 1431
|| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1375 CAATATGCAGCCTATAGCTTTATTGTTATGGAAGATTGTGATGAGAATCAAACGTGCGAG 1434
Query 1432 TGGTACAAATCCAGACCTAAAATGATGGAAGCTCTGAATGGTGTGTTTCGTATTAAGAAC 1491
|||||||| |||||||| ||||||||||||||| | ||| | ||||| ||| ||||||||
Sbjct 1435 TGGTACAATTCCAGACCCAAAATGATGGAAGCTTTAAATAGCGTGTTCCGTCTTAAGAAC 1494
Query 1492 GACATAAACACCTTTGAGCAAGAGATGAGCAGAGGAGAAGTGGCTAAAGGGCTGAATTGT 1551
||||||| |||| |||| |||||| || ||||||||| |||||||||||||||||||||
Sbjct 1495 GACATAATTACCTATGAGAAAGAGACGAACAGAGGAGATGTGGCTAAAGGGCTGAATTGT 1554
Query 1552 TACATGAAGCAACATGGTGTTTCCAAAGAAGAGGCGATTGGAGAGAT-GAACAAGATTTA 1610
||||||||||||||||||||| |||||||||| ||| ||||||| || |||||||||
Sbjct 1555 TACATGAAGCAACATGGTGTTACCAAAGAAGAAGCGGTTGGAGA-ATTGAACAAGATGGC 1613
Query 1611 TAGTAATTATTACAAAATAATAATGGAGGAGTACTTGACGACAACCGCTGTGCCACGTCC 1670
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1614 TAGTGATTATTACAAAATAATAATGGAGGAGTACTTGACGACAACAGCTGTGCCACGCCC 1673
Query 1671 GATTCTGGTGCGATGCCTCAACGTTTCACGACCCATCCATCATTTTTACAAGGAGAGAGA 1730
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||| || ||
Sbjct 1674 GATTCTGGTGCGATGCCTCAACGTTTCACGACCCATTGATCTTTTTTACAGGGATAGTGA 1733
Query 1731 TGAATTCACAGATCCTTATTTCGGAATGCTTAAAGAAGTCATCACTTCTTTGTTCATCCA 1790
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 1734 TGAATTCACAGATCCTTCTTTCGGAAAGCTCAAAGAAGTCATCACTTCTTTCTTCATCCA 1793
Query 1791 TCCAATTC-CTCTTTGA 1806
|||||| | ||||||||
Sbjct 1794 TCCAAT-CGCTCTTTGA 1809
> Ahg341583 jgi|Araly1|341583|fgenesh1_pg.C_scaffold_3001346
Length=1041
Score = 418 bits (226), Expect = 7e-116
Identities = 509/642 (79%), Gaps = 34/642 (5%)
Strand=Plus/Plus
Query 55 ACAAACCCCTCTCTTTTTCCTCGGCGTTGGCTTCACAAG-CACACTCTTTCCTT-GAAAC 112
||||||| |||||| |||||| |||| ||||||| || |||||| ||| ||| ||| |
Sbjct 58 ACAAACCTCTCTCTCTTTCCT---CGTTTGCTTCAC-AGCCACACT-TTTTCTTGGAAGC 112
Query 113 CGGCAAAACAACACCACTTGGTCTG-CGTTAGGGCTACTGAGAGTAATGATAATCTTGAA 171
| || || ||||| ||||| || | || ||| ||||| ||||||||||| |||||||
Sbjct 113 CCGC--AA-AACACGACTTGTTC-GTTGTAAGGTCTACTAAGAGTAATGATGATCTTGAG 168
Query 172 AGTAGTCGTCCCTTGGCACACTTTTCTCCCACTCTTTGGGGAGATCACTTCCTT-TCTGT 230
||||||||||| ||| | || ||||||||| ||||||||||||||||||| ||| |||||
Sbjct 169 AGTAGTCGTCCTTTGACGCAATTTTCTCCCTCTCTTTGGGGAGATCACTT-CTTCTCTGT 227
Query 231 TCCCCTCCAT-GTCGCTGAATTTGATGATTTCTCAAGAGAGATTGAAGTGACGATGAAGC 289
| ||||| || | |||||||||| |||| | |||||||||| || || | ||||
Sbjct 228 TTCCCTCGATAG-CGCTGAATTTTATGAACTAGAAAGAGAGATT-AA--AACTACCAAGC 283
Query 290 CAAAAGTGAGAGACATGCTCAAGTCTTC-CAAAAACAGCGACAATGAGAGGATCCGTCTC 348
|| |||||||||||||||| |||||| | | | ||||||||| |||| ||| ||| ||
Sbjct 284 CACTGGTGAGAGACATGCTCATGTCTTCTC-ACAGCAGCGACAAGGAGAAGATTCGTTTC 342
Query 349 ATCCATTTGCTAATGAACCTCGGAATCGCATATCATTTCGAGATTGAGATTGATGAGATT 408
||||||||||| | | | | || ||| | |||||||| || | || ||| | |||||
Sbjct 343 ATCCATTTGCTTGTCAGCATGGGGATCTCTTATCATTTTGATAAGGACATTCAAGAGATC 402
Query 409 CTTGGCCA-AGCTTTTGGGAATTTGGACGATATAATAGCCAAGGAAAATGATTTGGAAAC 467
||| ||| || |||| || ||||| || ||||||| |||||||||||||||||||||
Sbjct 403 CTTAACCACAG-TTTTACAAAGTTGGAAGACATAATAGACAAGGAAAATGATTTGGAAAC 461
Query 468 AATCTCCACCATGTTTGAGGT-TTTCAGACTACGCGGTTACTATATGCCTTGCT-ATGCA 525
|||||||| ||||||||||| ||| || ||| |||| || | ||| ||| | ||||
Sbjct 462 AATCTCCATTATGTTTGAGGTCTTT-AGGCTATACGGTCACAAGATGTCTTA-TGATGCC 519
Query 526 TTCAATAGATTCAAAGGTGAAGATGGGAGGTTCAAGGAAAGTCTAGCTG-AGGATATTAG 584
|| ||||||||| |||| ||||||||||||||||||| |||||||| || || ||||
Sbjct 520 TTTGATAGATTCAGAGGTAAAGATGGGAGGTTCAAGGAGAGTCTAGCCACAG-ATGTTAG 578
Query 585 AGGAATGCTACAGTTGTACGAAG--CAGCACATCTCGGGACACCATCTGAAGATATTATG 642
||||||||||||||||| | | | | || |||||||| ||||| ||||||||||| |||
Sbjct 579 AGGAATGCTACAGTTGTTCCA-GTTC-GCGCATCTCGGAACACCCTCTGAAGATATAATG 636
Query 643 GACGAAGCATTGAGCTTCACTCGGTATCGCTTAGAGTCGTTG 684
||||||||| |||| ||| | ||| ||| ||| ||||| |||
Sbjct 637 GACGAAGCAATGAGTTTCGCGCGGAATCACTTGGAGTC-TTG 677
> Ahg891372 jgi|Araly1|891372|Al_scaffold_0007_3358
Length=1845
Score = 222 bits (120), Expect = 6e-57
Identities = 479/645 (74%), Gaps = 53/645 (8%)
Strand=Plus/Plus
Query 1188 TGAAACTTTAGAAGAGATTGAACA-AGAAATGAGGCCACAG-GGAAGGTCACGCATTGTG 1245
||||||| | | |||||||||| | |||||||| ||| | | ||||| || || |||||
Sbjct 1224 TGAAACTATGGGAGAGATTGAA-AGAGAAATGATGCC-CCGAGGAAGATC-TGC-TTGTG 1279
Query 1246 -CAAGTAG-CGGTAGATGAGATC-AAGAAGTTGGGGAAAGCATACTTGGCTA-TCTCGAA 1301
|| || || |||| |||| | ||||| | |||| | | ||| | || | | || ||
Sbjct 1280 TAAAACAGACGATAGAGGAGA-CTAAGAACCTAGGGAGATCGTACCTAGC-ATTATCAAA 1337
Query 1302 ATGGGCACGCGCAA-GTCACGTGCCAACCTTTGAGGAGTACATGGAGTTTGGTAT-G-CA 1358
||||||| | | || |||| |||||||||||||| ||||||||| || |||| | | ||
Sbjct 1338 ATGGGCAAGTG-AAGGTCATGTGCCAACCTTTGATGAGTACATGAAGGTTGGGCTGGTCA 1396
Query 1359 GACGTCA---ATGGATCATTTTGCAGCCTATAGCTTTATCGCGATGGAAGATTGTGATGA 1415
|| || |||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 1397 -CCG-CAGGGATGGATGATTTTGCTTTGTACAGCTTTATCGCGATGGAAGATTGTGATGA 1454
Query 1416 GAATCAAACGTGCGAGTGGTACAAATCCA-GACCTAAAATGATGG-AAGCTCTGAATGGT 1473
||| ||| || ||| |||| ||| |||| | | ||||| || ||||| || || |
Sbjct 1455 GAAACAATTGTACGAATGGTTCAACTCCAAGTCA-AAAAT-ATTCCAAGCTTTG--TGCT 1510
Query 1474 GTGT-T-TCGTATTAAGAACGACATAAACACCTTTGAGCA-AGAGATGAGCAGAGGAGAA 1530
| | | |||| | || |||||||| | ||||| ||| | ||||||||||| ||||||
Sbjct 1511 ATATGTATCGTGTAAACAACGACATCATCACCTACGAG-AGAGAGATGAGCAAAGGAGAG 1569
Query 1531 GTGGCTAAA-GGGCTGAATTGTTACATGAAGCAACATGGTGTTTCCAAAGAAGAGGCGAT 1589
|||| | || ||| | || | ||||||||| ||||| |||||| | |||||| | ||| |
Sbjct 1570 GTGG-TGAATGGGGTCAACTCTTACATGAATCAACACGGTGTTACTAAAGAAAAAGCGGT 1628
Query 1590 TGGAGAGAT-GAACAAGATTTATAGTA-ATTATTACAAAATAATAATGGAGGAGTACTTG 1647
|| ||| || || ||||| ||| | || | || || ||| | |||||||||| |||
Sbjct 1629 TGAAGA-ATTGAGTAAGATGGCTAG-AGATAACTATAAGATAGTCATGGAGGAGTTGTTG 1686
Query 1648 ACGACAACCGCTGTGCCACGTCC-GATTCTGGTGCGATGCCTCAACGTTTCACGACCC-A 1705
|||||||| | ||||||||| | | |||||||||| ||||||||| || |||| | |
Sbjct 1687 ACGACAACTGATGTGCCACGACAAG-TTCTGGTGCGTTGCCTCAACATTGCACG-CTTGA 1744
Query 1706 TCCATCAT-TTTTACAAGGA-GA-GA-GATGAATTCAC-AGATCCTTATTTCGGAATGCT 1760
|| || | |||| |||||| | | ||||||||| | | |||| || |||| |||
Sbjct 1745 TCGATG-TGTTTTGCAAGGATGGTGCTGATGAATTCTCCA-ATCCGCAT---GGAAAGCT 1799
Query 1761 TAAAGAAGTCATCACTTCTTTGTTCATCCATCCA-ATTCCTCTTT 1804
||||| ||||||| ||| | |||||| ||| | |||||| |||
Sbjct 1800 CAAAGATCTCATCACCTCTCTATTCATCTATC-ATATTCCTGTTT 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5