BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14520.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341583 jgi|Araly1|341583|fgenesh1_pg.C_scaffold_3001346 780 0.0
> Ahg341583 jgi|Araly1|341583|fgenesh1_pg.C_scaffold_3001346
Length=1041
Score = 780 bits (422), Expect = 0.0
Identities = 594/674 (88%), Gaps = 23/674 (3%)
Strand=Plus/Plus
Query 143 CTCTCTGTCTCACGTCCAACCTCTCTCTCTTTCCTCAGCGTTTGCTTCAAAAG-CACACT 201
||| |||||| | | | |||||||||||||||||| |||||||||| | || ||||||
Sbjct 44 CTCACTGTCTTAAGACAAACCTCTCTCTCTTTCCT---CGTTTGCTTC-ACAGCCACACT 99
Query 202 CTTCCCCT-GAAACCGGCaaaaaaaCACCACTTGGTAT-G-TGTAAGGTCTACAAAGAGT 258
|| | | ||| || || ||||||| |||| || | | |||||||||||| ||||||
Sbjct 100 -TTTTCTTGGAAGCCCGC---AAAACACGACTT-GT-TCGTTGTAAGGTCTACTAAGAGT 153
Query 259 AGTGATGATCTTGAGGGTAGTCGTCCTTCAACGTACTTTTCTCCCTCTCTTTGGGGAGAT 318
| ||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 154 AATGATGATCTTGAGAGTAGTCGTCCTTTGACGCAATTTTCTCCCTCTCTTTGGGGAGAT 213
Query 319 CACTTTC-TCTCTGTTTCCCTCGACCGCGGTGAATTTGATGAACTAGAAAGAGAGATTGA 377
||| ||| |||||||||||||||| ||| ||||||| |||||||||||||||||||| |
Sbjct 214 CAC-TTCTTCTCTGTTTCCCTCGATAGCGCTGAATTTTATGAACTAGAAAGAGAGATTAA 272
Query 378 AACTATGAAGCCACTGGTGAAAGACATGCTCATGTCTTCTCAAAGCAGCGACAAGGAGAA 437
||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 273 AACTACCAAGCCACTGGTGAGAGACATGCTCATGTCTTCTCACAGCAGCGACAAGGAGAA 332
Query 438 GATTCGTCTAATCCATTTGCTCGTTAGCCTCGGGAGCTCTTATCATTTTGATAAGGAGAT 497
||||||| | ||||||||||| || ||| | |||| ||||||||||||||||||||| ||
Sbjct 333 GATTCGTTTCATCCATTTGCTTGTCAGCATGGGGATCTCTTATCATTTTGATAAGGACAT 392
Query 498 TCAAGATATCCTTAAACACAGTTTCACAAAGTTGGATGACATAATAGTTGGGGAAGATGA 557
|||||| |||||||| |||||||| ||||||||||| |||||||||| |||| ||||
Sbjct 393 TCAAGAGATCCTTAACCACAGTTTTACAAAGTTGGAAGACATAATAGACAAGGAAAATGA 452
Query 558 TTTGGAGACAATCTCCATCATGTTTGAGGTCTTTAGACTATACGGTCACAAGATGTCTTG 617
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 453 TTTGGAAACAATCTCCATTATGTTTGAGGTCTTTAGGCTATACGGTCACAAGATGTCTTA 512
Query 618 TGATGCCTTTGATAGATTCAGAGGTGAAGATGGGAGGTTCAAGGAGAGTCTAGCCAAAGA 677
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 513 TGATGCCTTTGATAGATTCAGAGGTAAAGATGGGAGGTTCAAGGAGAGTCTAGCCACAGA 572
Query 678 TGTTAGAGGAATGCTACAGTTGTTCGAAG-TCGCGCATCTAGGAACACCCTCTGAAGATA 736
||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 573 TGTTAGAGGAATGCTACAGTTGTTC-CAGTTCGCGCATCTCGGAACACCCTCTGAAGATA 631
Query 737 TAATGGACGAAGCA-TCGAGTTTCGCCCAGAATCACTTGGATTCTTGGATAGGTGGTAAC 795
|||||||||||||| | ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 632 TAATGGACGAAGCAAT-GAGTTTCGCGCGGAATCACTTGGAGTCTTGGATAGGTGGTAAC 690
Query 796 GTATCCGGTG-CAA 808
|| | |||| |||
Sbjct 691 -TA-CTGGTGGCAA 702
Score = 425 bits (230), Expect = 5e-118
Identities = 310/349 (89%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 872 TACTAGTGGCAAGAGAATATATATC----TTACTACGAACAAGAAGAAGGTCACAACAAG 927
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 691 TACTGGTGGCAAGAGAATATATATCTTAATTACTACGAACAAGAAGGAGGTCACAATGAG 750
Query 928 ATCCTGCTCAAGTTTGCAAAGCTTAACTTCAACTTTTGCCAGTTTCATTATATCCAAGAA 987
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 751 ATCCTGCTCAAGTTTGCAAAGCTTAACTTCAACTTTTGCCAGTTTCATTACATCCAAGAA 810
Query 988 CTCAAAACTCTCACCAAATGGTGGAAGGACCTAGATCTTGCATCTAAGTTACCTTACATT 1047
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 811 CTCAAAACTCTCACCAAATGGTGGAAGGACTTAGATCTTGTATCTAAGTTACCTTACATT 870
Query 1048 AGGGATAGACTTGTAGAGAGCCATCTCGGGGGTTTGGGGCCGTACTTCGAGCCACACTAT 1107
|||||||||||||| ||| ||||| ||| | | |||| |||| || |||||||| |||
Sbjct 871 AGGGATAGACTTGTGGAGTGCCATTTCGCGTCTCTGGGAACGTATTTTGAGCCACAATAT 930
Query 1108 TCTCTTGGGAGGATCATAGTGGCTAAAATCATCATGACCATGGTTGTTGTGGATGACACT 1167
|| |||||||| || ||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 931 TCCCTTGGGAGAATAATATTGGCTAAAATCATGATGATTGTGGTTGTTGTGGATGACACA 990
Query 1168 TATGATGCACATGCAACTGTACCCGAAGTTGCGGTTCTTACCGAATGTT 1216
||||||||| |||||||| | ||||||||| | | |||||| |||||||
Sbjct 991 TATGATGCATATGCAACTCTTCCCGAAGTTACCGCTCTTACGGAATGTT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5