BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14550.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478873 jgi|Araly1|478873|fgenesh2_kg.3__1574__AT3G14550.1 1541 0.0
Ahg947419 jgi|Araly1|947419|scaffold_703648.1 420 1e-116
> Ahg478873 jgi|Araly1|478873|fgenesh2_kg.3__1574__AT3G14550.1
Length=1172
Score = 1541 bits (834), Expect = 0.0
Identities = 1049/1152 (91%), Gaps = 18/1152 (2%)
Strand=Plus/Plus
Query 5 TTATAAAGTTCTATTAGAGACGGTGGATAGGCCATGGCTACTACTGTTCATCTCAGCTCA 64
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1 TTATAAAGTTCTATTGGAGACGGTGGACAGGCCATGGCTACTACTGTTCCTCTCAGCTCA 60
Query 65 TTCTCCCTCTTCATCCAATCCAGAGGAAGAAGAGACAACTCCATATCTTCCGTCAAGAGT 124
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCCCACTTCATCCAATCCAGAGGAAGAAGAGACAACTCCATATCTTCCGTCAAGAGT 120
Query 125 CTCAAAAAACGCACAGGTTTGTCTCCCTCTTCTGCCCTCACCTCACAAGGTGGCAGAGAC 184
||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||
Sbjct 121 CTCCAAAAACGCACAGGTTTGTCTCTCTCTTCTGCGCTCACCTCACAAGGTGCCAGAGAC 180
Query 185 ATGATTCCACCAGAGGGAAAATGCAATGATCACAACTCTGCTTTTGATTTCAAGTTGTAT 244
||||||||||||||||||||| || | |||| ||||||||| ||||| ||||||| |||
Sbjct 181 ATGATTCCACCAGAGGGAAAAAGCGACGATCGCAACTCTGCCTTTGACTTCAAGTCCTAT 240
Query 245 ATGATCCGCAAAGCCGAATCTGTAAATGCGGCTCTCGACGTTTCTGTACCGCTCCGAGAA 304
||||| |||||| |||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 241 ATGATTAATAAAGCCAAATCTGTAAACGCGGCTCTCGACATTTCAGTACCGCTCCGAGAA 300
Query 305 CCCCTCACTGTCCAGGAAGCCGTGCGGTACTCATTGCTAGCGGGCGGAAAACGTGTGAGG 364
|||||||| |||||||| |||||||||||||||||| | ||||| |||||||||||||||
Sbjct 301 CCCCTCACGGTCCAGGAGGCCGTGCGGTACTCATTGTTGGCGGGTGGAAAACGTGTGAGG 360
Query 365 CCTCTGCTCTGCATTGCCGT-CTGCGAGCTTGTGGGAGGCG-ACGAGGCTACTGCCATGT 422
||| |||||||||||| | | ||||||||| ||||| || | |||||||||||||||||
Sbjct 361 CCTATGCTCTGCATTG-CTTCCTGCGAGCTCGTGGGTGG-GAACGAGGCTACTGCCATGC 418
Query 423 CAGCTGCTTGCGCGGTTGAGATGATCCACACAAGCTCTCTTATTCATGACGATCTTCCGT 482
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAGCCGCTTGCGCAGTCGAGATGATCCACACAAGCTCTCTTATTCATGACGATCTTCCGT 478
Query 483 GCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAGGTATATGGAGAAG 542
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 479 GCATGGACAATGCCGACCTCCGCAGAGGCAAGCCAACCAACCACAAGGTATTTGGAGAAG 538
Query 543 ACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTGGCGTTTGAGCACATGACGTTTG 602
||||||| |||||||| ||||||||||||||||| || |||||||||||||||||| |||
Sbjct 539 ACATGGCTGTTTTGGCGGGTGATGCACTCCTTGCTTTAGCGTTTGAGCACATGACGGTTG 598
Query 603 TGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTCGCGCGGTGGTTGAGCTGGCCAGGG 662
|||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 TGTCGAGTGGTTTGGTCCCTCCCGAGAGGATGATTCGCGCGGTGGCTGAGCTGGCCAGGG 658
Query 663 CCATAGGGACTACAGGGCTAGTTGCTGGACAAATGATAGACCTAGCCAGCGAAAGACTGA 722
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 659 CCATAGGGACAACAGGGCTCGTTGCTGGACAAATGATAGACCTAGCCAGCGAAAGATTGA 718
Query 723 ATCCAGACAAGGTTGGATTGGAGCATCTAGAGTTCATCCATCTCCACAAAACGGCGGCAT 782
||||| || | | ||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 719 ATCCACACGACGCTGGATTGGAGCGTCTAGAGTTCATCCACCTCCACAAAACAGCGGCAT 778
Query 783 TGTTGGAGGCAGCGGCGGTTTTAGGGGTTATAATGGGAGGTGGAACAGAGGAAGAGATCG 842
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 779 TGTTGGAGGCAGCGGCGGTGTTAGGGGCCATAATGGGAGGTGGAACAGAGGAAGAGATCG 838
Query 843 A-AAAGCTTAGAAAGTATGCTAGGTGTATTGGACTACTGTTTCAGGTGGTTGATGACATT 901
| ||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||
Sbjct 839 AGAAA-CTTAGAAAGTATGCGAGATGTATTGGGCTACTGTTTCAGGTGGTTGATGATATT 897
Query 902 CTCGACGTAACAAAATCTACTGAGGAATTGGGAAAGACTGCAGGAAAAGACGTAATGGCT 961
||||||||||| ||||||||||||||||||| ||||| || ||||||||| |||||||
Sbjct 898 CTCGACGTAACGGAATCTACTGAGGAATTGGGTAAGACCGCCGGAAAAGACTTAATGGCC 957
Query 962 GGAAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGAGATCAAAGGAAGTTGCAGAGAAA 1021
|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 958 GGAAAGCTGACGTATCCAAGACTGATAGGTTTGGAGAGATCGAGGGAAGTTGCAGAGAAG 1017
Query 1022 CTGAGGAGAGAAGCAGAGGAACAACTTCTAGGGTTTGAT-CC-AAGTAAGGCGGCGCCTC 1079
||||||| ||||||||||||||| || ||||||||||| || || || | |||||||
Sbjct 1018 CTGAGGAAAGAAGCAGAGGAACAGGTTTTAGGGTTTGATTCCGAA--AATTCAGCGCCTC 1075
Query 1080 TGGTGGCTCTTGCTAGCTACATCGCTTGCAGACACAACTGA-A-T------GGACTGATC 1131
|||||||||||||||| ||||| |||||||||||||||||| | | |||||||||
Sbjct 1076 TGGTGGCTCTTGCTAGTTACATTGCTTGCAGACACAACTGATACTTTTCATGGACTGATC 1135
Query 1132 ATATCCTCAATG 1143
||||||||||||
Sbjct 1136 ATATCCTCAATG 1147
> Ahg947419 jgi|Araly1|947419|scaffold_703648.1
Length=615
Score = 420 bits (227), Expect = 1e-116
Identities = 436/531 (82%), Gaps = 38/531 (7%)
Strand=Plus/Plus
Query 669 GGACTACAGGGCTAGTTGCTGGACAAATGA-TAGACCT-AGCCAGCGAAAGACTGAATCC 726
|||| | |||| |||| || || ||| | | | ||||| || |||||||||| |||||||
Sbjct 88 GGACAAAAGGGTTAGTAGCAGGGCAAGTAACT-GACCTAAG-CAGCGAAAGATTGAATCC 145
Query 727 AGACAAGGTTGGATTGGAGCATCTAGAGTTCATCCATCTCCACAAAACGGCGGCATTGTT 786
| || | | ||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 146 ACACGACGCTGGATTGGAGCGTCTAGAATTAATCCATCTCCACAAAACGGCGGCATTGTT 205
Query 787 GGAGGCAGCGGCGGTTTTAGGGGTTATAATGGGAGGTGGAACAGAGGAAGAGATCGA-AA 845
||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||| ||
Sbjct 206 GGAGGAAGCGGCTATTTTAGGGGTCATAATGGGAGATGGAACAGAGGAGGAGATCGAGAA 265
Query 846 AGCTTAGAAAGTATGCTAGGTGTATTGGACTACTGTTTCAGGTGGTTGATGACATTCTCG 905
| |||||||||||||| || |||||||| ||| ||||||| ||||||||||||||||| |
Sbjct 266 A-CTTAGAAAGTATGCGAGATGTATTGGCCTATTGTTTCAAGTGGTTGATGACATTCTTG 324
Query 906 ACGTAACAAAATCTACTGAGGAATTGGGAAAGACTG-CAGGAAAAGACGTAA-------- 956
||||||| ||||||||||||| ||||| ||||||| | ||||||||| |||
Sbjct 325 ACGTAACGGAATCTACTGAGGATTTGGGTAAGACTGTC-GGAAAAGACTTAAGAGCAACC 383
Query 957 ----TGG---CT-----GG----AAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGAGA 1000
||| || || ||||||||||||||||||||| |||||||||||||||
Sbjct 384 ACAATGGTTGCTCTAATGGCCGGAAAGCTGACGTATCCAAGGCTAATAGGTTTGGAGAGA 443
Query 1001 TCAAAGGAAGTTGCAGAGAAACTGAGGAGAGAAGCAGAGGAACAACTTCTAGGGTTTGAT 1060
|| | || ||||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 444 TCGAGGGCAGTTGCAGAGAAACTGAACAGAGAAGCAGAGGAACAACTTCTAAGGTTTCAT 503
Query 1061 CC-AAGTAAGGCGGCGCCTCTGGTGGCTCTTGCTAGCTACATCGCTTGCAGACACAACTG 1119
| || |||||| ||||||||| ||||||||||||||||||| ||| | || | ||
Sbjct 504 CGGAA-TAAGGCAGCGCCTCTGATGGCTCTTGCTAGCTACATTGCT--CTGATATTT-TG 559
Query 1120 AATGGACTGATCATATCCTCAATGCATC-AATCTCCTAACAAGTCCTTTTA 1169
|| || |||||||||||||| ||||| |||||||||||| |||| ||||
Sbjct 560 TATCAACAGATCATATCCTCAACGCATCTAATCTCCTAACACGTCCCTTTA 610
Score = 84.2 bits (45), Expect = 2e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 588 AGCACATGACGTTTGTGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTC 638
||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 35 AGCACATGACGGTTGCGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTC 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5