BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14550.1 Length=1308 Score E Sequences producing significant alignments: (Bits) Value Ahg478873 jgi|Araly1|478873|fgenesh2_kg.3__1574__AT3G14550.1 1541 0.0 Ahg947419 jgi|Araly1|947419|scaffold_703648.1 420 1e-116 > Ahg478873 jgi|Araly1|478873|fgenesh2_kg.3__1574__AT3G14550.1 Length=1172 Score = 1541 bits (834), Expect = 0.0 Identities = 1049/1152 (91%), Gaps = 18/1152 (2%) Strand=Plus/Plus Query 5 TTATAAAGTTCTATTAGAGACGGTGGATAGGCCATGGCTACTACTGTTCATCTCAGCTCA 64 ||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1 TTATAAAGTTCTATTGGAGACGGTGGACAGGCCATGGCTACTACTGTTCCTCTCAGCTCA 60 Query 65 TTCTCCCTCTTCATCCAATCCAGAGGAAGAAGAGACAACTCCATATCTTCCGTCAAGAGT 124 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCTCCCACTTCATCCAATCCAGAGGAAGAAGAGACAACTCCATATCTTCCGTCAAGAGT 120 Query 125 CTCAAAAAACGCACAGGTTTGTCTCCCTCTTCTGCCCTCACCTCACAAGGTGGCAGAGAC 184 ||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| Sbjct 121 CTCCAAAAACGCACAGGTTTGTCTCTCTCTTCTGCGCTCACCTCACAAGGTGCCAGAGAC 180 Query 185 ATGATTCCACCAGAGGGAAAATGCAATGATCACAACTCTGCTTTTGATTTCAAGTTGTAT 244 ||||||||||||||||||||| || | |||| ||||||||| ||||| ||||||| ||| Sbjct 181 ATGATTCCACCAGAGGGAAAAAGCGACGATCGCAACTCTGCCTTTGACTTCAAGTCCTAT 240 Query 245 ATGATCCGCAAAGCCGAATCTGTAAATGCGGCTCTCGACGTTTCTGTACCGCTCCGAGAA 304 ||||| |||||| |||||||||| |||||||||||| |||| ||||||||||||||| Sbjct 241 ATGATTAATAAAGCCAAATCTGTAAACGCGGCTCTCGACATTTCAGTACCGCTCCGAGAA 300 Query 305 CCCCTCACTGTCCAGGAAGCCGTGCGGTACTCATTGCTAGCGGGCGGAAAACGTGTGAGG 364 |||||||| |||||||| |||||||||||||||||| | ||||| ||||||||||||||| Sbjct 301 CCCCTCACGGTCCAGGAGGCCGTGCGGTACTCATTGTTGGCGGGTGGAAAACGTGTGAGG 360 Query 365 CCTCTGCTCTGCATTGCCGT-CTGCGAGCTTGTGGGAGGCG-ACGAGGCTACTGCCATGT 422 ||| |||||||||||| | | ||||||||| ||||| || | ||||||||||||||||| Sbjct 361 CCTATGCTCTGCATTG-CTTCCTGCGAGCTCGTGGGTGG-GAACGAGGCTACTGCCATGC 418 Query 423 CAGCTGCTTGCGCGGTTGAGATGATCCACACAAGCTCTCTTATTCATGACGATCTTCCGT 482 |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 CAGCCGCTTGCGCAGTCGAGATGATCCACACAAGCTCTCTTATTCATGACGATCTTCCGT 478 Query 483 GCATGGACAATGCCGACCTCCGCAGAGGCAAGCCCACCAACCACAAGGTATATGGAGAAG 542 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 479 GCATGGACAATGCCGACCTCCGCAGAGGCAAGCCAACCAACCACAAGGTATTTGGAGAAG 538 Query 543 ACATGGCGGTTTTGGCAGGTGATGCACTCCTTGCATTGGCGTTTGAGCACATGACGTTTG 602 ||||||| |||||||| ||||||||||||||||| || |||||||||||||||||| ||| Sbjct 539 ACATGGCTGTTTTGGCGGGTGATGCACTCCTTGCTTTAGCGTTTGAGCACATGACGGTTG 598 Query 603 TGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTCGCGCGGTGGTTGAGCTGGCCAGGG 662 |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 599 TGTCGAGTGGTTTGGTCCCTCCCGAGAGGATGATTCGCGCGGTGGCTGAGCTGGCCAGGG 658 Query 663 CCATAGGGACTACAGGGCTAGTTGCTGGACAAATGATAGACCTAGCCAGCGAAAGACTGA 722 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 659 CCATAGGGACAACAGGGCTCGTTGCTGGACAAATGATAGACCTAGCCAGCGAAAGATTGA 718 Query 723 ATCCAGACAAGGTTGGATTGGAGCATCTAGAGTTCATCCATCTCCACAAAACGGCGGCAT 782 ||||| || | | ||||||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 719 ATCCACACGACGCTGGATTGGAGCGTCTAGAGTTCATCCACCTCCACAAAACAGCGGCAT 778 Query 783 TGTTGGAGGCAGCGGCGGTTTTAGGGGTTATAATGGGAGGTGGAACAGAGGAAGAGATCG 842 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 779 TGTTGGAGGCAGCGGCGGTGTTAGGGGCCATAATGGGAGGTGGAACAGAGGAAGAGATCG 838 Query 843 A-AAAGCTTAGAAAGTATGCTAGGTGTATTGGACTACTGTTTCAGGTGGTTGATGACATT 901 | ||| |||||||||||||| || |||||||| ||||||||||||||||||||||| ||| Sbjct 839 AGAAA-CTTAGAAAGTATGCGAGATGTATTGGGCTACTGTTTCAGGTGGTTGATGATATT 897 Query 902 CTCGACGTAACAAAATCTACTGAGGAATTGGGAAAGACTGCAGGAAAAGACGTAATGGCT 961 ||||||||||| ||||||||||||||||||| ||||| || ||||||||| ||||||| Sbjct 898 CTCGACGTAACGGAATCTACTGAGGAATTGGGTAAGACCGCCGGAAAAGACTTAATGGCC 957 Query 962 GGAAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGAGATCAAAGGAAGTTGCAGAGAAA 1021 |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct 958 GGAAAGCTGACGTATCCAAGACTGATAGGTTTGGAGAGATCGAGGGAAGTTGCAGAGAAG 1017 Query 1022 CTGAGGAGAGAAGCAGAGGAACAACTTCTAGGGTTTGAT-CC-AAGTAAGGCGGCGCCTC 1079 ||||||| ||||||||||||||| || ||||||||||| || || || | ||||||| Sbjct 1018 CTGAGGAAAGAAGCAGAGGAACAGGTTTTAGGGTTTGATTCCGAA--AATTCAGCGCCTC 1075 Query 1080 TGGTGGCTCTTGCTAGCTACATCGCTTGCAGACACAACTGA-A-T------GGACTGATC 1131 |||||||||||||||| ||||| |||||||||||||||||| | | ||||||||| Sbjct 1076 TGGTGGCTCTTGCTAGTTACATTGCTTGCAGACACAACTGATACTTTTCATGGACTGATC 1135 Query 1132 ATATCCTCAATG 1143 |||||||||||| Sbjct 1136 ATATCCTCAATG 1147 > Ahg947419 jgi|Araly1|947419|scaffold_703648.1 Length=615 Score = 420 bits (227), Expect = 1e-116 Identities = 436/531 (82%), Gaps = 38/531 (7%) Strand=Plus/Plus Query 669 GGACTACAGGGCTAGTTGCTGGACAAATGA-TAGACCT-AGCCAGCGAAAGACTGAATCC 726 |||| | |||| |||| || || ||| | | | ||||| || |||||||||| ||||||| Sbjct 88 GGACAAAAGGGTTAGTAGCAGGGCAAGTAACT-GACCTAAG-CAGCGAAAGATTGAATCC 145 Query 727 AGACAAGGTTGGATTGGAGCATCTAGAGTTCATCCATCTCCACAAAACGGCGGCATTGTT 786 | || | | ||||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct 146 ACACGACGCTGGATTGGAGCGTCTAGAATTAATCCATCTCCACAAAACGGCGGCATTGTT 205 Query 787 GGAGGCAGCGGCGGTTTTAGGGGTTATAATGGGAGGTGGAACAGAGGAAGAGATCGA-AA 845 ||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||| || Sbjct 206 GGAGGAAGCGGCTATTTTAGGGGTCATAATGGGAGATGGAACAGAGGAGGAGATCGAGAA 265 Query 846 AGCTTAGAAAGTATGCTAGGTGTATTGGACTACTGTTTCAGGTGGTTGATGACATTCTCG 905 | |||||||||||||| || |||||||| ||| ||||||| ||||||||||||||||| | Sbjct 266 A-CTTAGAAAGTATGCGAGATGTATTGGCCTATTGTTTCAAGTGGTTGATGACATTCTTG 324 Query 906 ACGTAACAAAATCTACTGAGGAATTGGGAAAGACTG-CAGGAAAAGACGTAA-------- 956 ||||||| ||||||||||||| ||||| ||||||| | ||||||||| ||| Sbjct 325 ACGTAACGGAATCTACTGAGGATTTGGGTAAGACTGTC-GGAAAAGACTTAAGAGCAACC 383 Query 957 ----TGG---CT-----GG----AAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGAGA 1000 ||| || || ||||||||||||||||||||| ||||||||||||||| Sbjct 384 ACAATGGTTGCTCTAATGGCCGGAAAGCTGACGTATCCAAGGCTAATAGGTTTGGAGAGA 443 Query 1001 TCAAAGGAAGTTGCAGAGAAACTGAGGAGAGAAGCAGAGGAACAACTTCTAGGGTTTGAT 1060 || | || ||||||||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 444 TCGAGGGCAGTTGCAGAGAAACTGAACAGAGAAGCAGAGGAACAACTTCTAAGGTTTCAT 503 Query 1061 CC-AAGTAAGGCGGCGCCTCTGGTGGCTCTTGCTAGCTACATCGCTTGCAGACACAACTG 1119 | || |||||| ||||||||| ||||||||||||||||||| ||| | || | || Sbjct 504 CGGAA-TAAGGCAGCGCCTCTGATGGCTCTTGCTAGCTACATTGCT--CTGATATTT-TG 559 Query 1120 AATGGACTGATCATATCCTCAATGCATC-AATCTCCTAACAAGTCCTTTTA 1169 || || |||||||||||||| ||||| |||||||||||| |||| |||| Sbjct 560 TATCAACAGATCATATCCTCAACGCATCTAATCTCCTAACACGTCCCTTTA 610 Score = 84.2 bits (45), Expect = 2e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 588 AGCACATGACGTTTGTGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTC 638 ||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 35 AGCACATGACGGTTGCGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTC 85 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48911702511 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5