BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14580.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904390 jgi|Araly1|904390|Al_scaffold_0003_1518 1748 0.0
> Ahg904390 jgi|Araly1|904390|Al_scaffold_0003_1518
Length=1230
Score = 1748 bits (946), Expect = 0.0
Identities = 1131/1219 (93%), Gaps = 17/1219 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTTCGGAGGCTTGTTCTGTCTGCAACATCGAATTCAAATCCCAGAAGAAG-C-C 58
|||||| |||||||||| ||||| | |||| ||||||||||||||||| || | | | |
Sbjct 1 ATGATTATTCGGAGGCTGGTTCTATTTGCAGCATCGAATTCAAATCCCGGACG--GCCTC 58
Query 59 AATCACTTTCATCTTCTGGTGTTCGTA-TTCTCTCATCATCATCTTCAGATAGATATACG 117
|||||||||| ||||| |||||| | ||||||||||||||||||| ||||||||||||
Sbjct 59 AATCACTTTCCGCTTCTACTGTTCG-ACTTCTCTCATCATCATCTTCGGATAGATATACG 117
Query 118 TCGTCCTCGCAACGATATTCCGGTGACGAT-AGACTCGCCAGGCTAAGGCACAAGGACTG 176
|||| ||||||||||| |||||||||||| || ||||||||||||| |||||| || ||
Sbjct 118 CCGTCGTCGCAACGATACTCCGGTGACGATAAG-CTCGCCAGGCTAAAGCACAAAGATTG 176
Query 177 GTTAGCCCCAAACGAAGTTTTGAAAATCTTCGACAATGTCAAAGATCCGAGCTTCCTGCT 236
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 177 GTTAGCCCCAAACGAGGTTTTGAAAATCTTCGAGAATGTCAAAGATCCGAGCTTTCTGAT 236
Query 237 GCCAGCTTACCAGCATTACTCTAAACGGAAAGACTATCAACCAACGGAATCTCTCTACGC 296
||| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 237 GCCGGCTTACCAACATTACTCTAAACGTAAAGATTATCAACCGACGGAATCTCTCTACGC 296
Query 297 CCTTATGATCAACAAGTTTGGCCAAGCTAAAATGTACGATGAAATCGAAGAAGTAATGAG 356
|||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 297 CCTTCTGATCAACAAGTTTGGACAAGCTAAAATGTTCGATGAAATCGAAGAGGTAATGAG 356
Query 357 AACTATAAAGCTTGAGAAAAGATGTCGTTTCTCAGAGGAGTTT-TTCTACAATTTGATGA 415
||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 357 TACTATAAAGCTTGAGAAAAGATGTCGTTTTTCAGAGGA-TTTCTTCTACAATTTGATGA 415
Query 416 GGATTTACGGGAACTTAGCCGGAAGAATCAACCGAGCGATCGAGATATTGTTCGGTATGC 475
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 416 GGATTTACGGGAATTTAGCCGGAAGAATCAACCGAGCGATCGAGATTTTGTTCGGTATGC 475
Query 476 CGGATTTTGGATGCTGGCCAAGTTCTAAGAGTTTCAATTTCATACTGAATTTACTTGTTT 535
||||||| |||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct 476 CGGATTTCGGATGCTGGCCAAGCGCCAAAAGTTTCAATTTCATTCTGAATTTACTTGTTT 535
Query 536 CCGCGAAGTTGTTCGATGAGATTCATAAGATCTTTGTGAGTGCTCCTAAGCTAGGTGTTG 595
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 CGGCGAAGTTGTTCGATGAGATTCATAAGATCTTTGTGAGTGCTCCTAAGCTGGGTGTTG 595
Query 596 AGATCGATGCTTGTTGCTTGAATATACTCATCAAAGGACTCTGTGAGAGTGGGAATTTAG 655
| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 596 AAATCGATGCTTGTTGTTTGAATATACTCATCAAAGGACTGTGCGAGAGTGGGAATTTGG 655
Query 656 AAGCTGCACTCCAACTGCTCGACGAATTTCCTCAACAAAAATCACGGCCTAATGTGATGA 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 AAGCTGCACTCCAACTGCTCGACGAATTTCCTAAACAAAAATCACGGCCTAATGTGATGA 715
Query 716 CGTTTTCTCCTTTGATTCGTGGTTTCTGTAATAAGGGAAAGTTCGAAGAAGCTTTTAAAT 775
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 CGTTTTCTCCTTTGATCCGTGGTTTCTGTAATAAGGGAAAGTTCGAAGAAGCTTTTAAGT 775
Query 776 TGTTGGAGAGGATGGAGAAGGAACGAATCGAACCAGATACTATCACGTTTAACATTTTGA 835
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 776 TGTTGGAGAGGATGGAGAAGGAACGAATCAAACCAGACACTATCACGTTTAACATTTTGA 835
Query 836 TTTCAGGGCTTAGGAAGAAAGGTAGAGTTGAAGAAGGGATTGATCTTTTAGAGAGAATGA 895
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 836 TTCCAGGGCTTAGGAAGAAAGGTAGGGTTGAAGAAGGGATTGATCTTTTGGAGAGAATGA 895
Query 896 AGGTAAAGGGGTGTGAACCAAATCCTGGGACTTATCAGGAGGTGTTGTATGGTCTCTTGG 955
|| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 896 AGCTAAAGGGGTGTGAACCAAATCCTGGGACTTATCAAGAGGTGTTATATGGTCTCTTGG 955
Query 956 ATAAAAAGAGGAACTTGGAAGCTAAAGAGATGATGAGTCAGATGATTTCATGGGGTATGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATAAAAAGAGGAACTTGGAAGCTAAAGAGATGATGAGTCAGATGATTTCATGGGGTATGA 1015
Query 1016 GACCCAGTTTTCTGTCTTACAAGAAGATGGTTTTGGGGCTTTGTGAAACGAAGTCGGTTG 1075
|||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1016 GACCCAGTTTTCTGTCGTACAAGAAGATGGTTCTGGGGCTCTGCGAAACGAAGTCGGTTG 1075
Query 1076 TGGAAATGGACTGGGTTTTGAGGCAAATGGTGAATCATGGTTTTGTTCCAAAGACATTG- 1134
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 1076 CGGAAATGGACTGGGTTTTGAGGAAAATGGTGAATCATGGTTTTGTTCCAAAAACAG-GC 1134
Query 1135 ATGTGGTGGAAAGTTGTTCAG-TGTGTTGTTTCAAAGAACAATGATGACTCTCAAGCAAA 1193
||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 1135 ATGTGGTGGAAAGCCGTTT-GCTGTGTTGTTTCAAAGAACAATGA---CTCTCAAGCAAA 1190
Query 1194 TTTGGATCGTATTACTGCT 1212
||||||||| |||||||||
Sbjct 1191 TTTGGATCGCATTACTGCT 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5