BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14600.1
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478879 jgi|Araly1|478879|fgenesh2_kg.3__1580__AT3G14600.1 937 0.0
Ahg482410 jgi|Araly1|482410|fgenesh2_kg.4__1470__AT2G34480.1 501 3e-141
> Ahg478879 jgi|Araly1|478879|fgenesh2_kg.3__1580__AT3G14600.1
Length=672
Score = 937 bits (507), Expect = 0.0
Identities = 578/612 (94%), Gaps = 6/612 (1%)
Strand=Plus/Plus
Query 4 AGCGCCACCGTTTAGCTCTTTTCTCTCTGTTTTGCTCTTGGCTGA-TTCGTTGGAGCTTG 62
|||||||||||||||||| |||||||||| ||| || ||||| ||||| |||||||
Sbjct 1 AGCGCCACCGTTTAGCTCCTTTCTCTCTG-TTT-ATC---GCTGATTTCGTCAGAGCTTG 55
Query 63 ATCTCTCCGTGGAAATGGGTGGTTTCCGGTTTCACCAGTATCAGGTGGTTGGGAGAGCCC 122
|||||||||| |||||||||| ||||||||||||||| || || ||||||||||||||||
Sbjct 56 ATCTCTCCGTAGAAATGGGTGCTTTCCGGTTTCACCAATACCAAGTGGTTGGGAGAGCCC 115
Query 123 TCCCGACAGAGAACGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTAGAAATG 182
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCCCGACTGAGAAAGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTAGAAATG 175
Query 183 AAGTATGCGCCAAGTCCAAGTTCTGGTACTTCATGAGGAAACTGAAGAAGGTGAAGAAAA 242
|||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 176 AAGTATGCGCCAAGTCCAAGTTTTGGTACTTCATGAGGAAATTGAAGAAGGTCAAGAAAA 235
Query 243 GCAACGGACAGATGCTTGCCATCAATGAGATTTTCGAGAAGAACCCAACGACCATCAAGA 302
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 236 GCAACGGACAGATGCTTGCCATCAATGAGATTTTCGAGAAGAATCCTACGACAATCAAGA 295
Query 303 ACTACGGGATCTGGTTGCGTTATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGT 362
||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACTACGGTATCTGGCTGCGATATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGT 355
Query 363 ACCGTGACACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACCGTGACACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTC 415
Query 423 ATAGAGTGAGGTTCCCTTGCATTCAGATCATCAAGACTGCGACTGTCCCTGCAAAGCTTT 482
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 416 ATAGAGTGAGGTTCCCTTGCATTCAGATCATCAAGACTGCAACAGTCCCTGCAAAGCTGT 475
Query 483 GCAAGAGAGAGATCACCAAGCAGTTCCATAACTCGAAGATCAAGTTCCCTCTTGTTTTCA 542
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 476 GCAAGAGAGAGATCACCAAGCAGTTCCACAACTCGAAGATCAAGTTCCCTCTTGTTTTCA 535
Query 543 GGAAGGTCAGACCACCAAGCAGGAAGCTTAAGACTACATACAAGGCATCAAAACCTAACC 602
| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 536 GAAAGGTCAGACCACCAACCAGGAAGCTGAAGACTACATACAAGGCATCAAAGCCTAACC 595
Query 603 TTTTCATGTAGA 614
||||||||||||
Sbjct 596 TTTTCATGTAGA 607
Score = 95.3 bits (51), Expect = 6e-19
Identities = 61/66 (92%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 640 ATAGGCTTCTTGTTCCTAGTCTGAACAAAACACTGGAGTTATCTTCTTTTGAACATTTTT 699
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 607 ATAGGGTTCGTGTTCCTAGTCTGAACAAAACACTGGAGTTATCTTCTCTTGAAGATTTTT 666
Query 700 CAACtt 705
|||||
Sbjct 667 GAACTT 672
> Ahg482410 jgi|Araly1|482410|fgenesh2_kg.4__1470__AT2G34480.1
Length=802
Score = 501 bits (271), Expect = 3e-141
Identities = 457/546 (84%), Gaps = 16/546 (3%)
Strand=Plus/Plus
Query 75 AAATGGGTGGTTTCCGGTTTCACCAGTATCAGGTGGTTGGG-AGAGCCCTCCCGACAGAG 133
||||||||| |||| ||||||||||||| ||||| | |||| ||||| || |||||||||
Sbjct 81 AAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTG-TGGGAAGAGCTCTACCGACAGAG 139
Query 134 AACGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTA-GAAATGAAGTAT-GCG 191
|| |||| ||| |||||||| ||| |||||||||| |||| | | || || || | | |
Sbjct 140 AAGGATGTGCAGCCTAAGATTTACCGGATGAAGCTCTGGGCCACG-AACGAGGT-TCGTG 197
Query 192 CCAAGTCCAAGTTCTGGTACTTCATGAGGAAACTGAAGAAGGTGAAGAAAAGCAACGGAC 251
||||||||||||||||||| ||| | ||||| || |||||||| ||||| || |||||||
Sbjct 198 CCAAGTCCAAGTTCTGGTATTTCTTAAGGAAGCTCAAGAAGGTCAAGAAGAGTAACGGAC 257
Query 252 AGATGCTTGCCATCAATGAGAT-TTTCGAGAAGAACCCAACGACCATCAAGAACTACGGG 310
||||||| |||||||| ||||| | | |||||||| ||||| || |||||||||| |||
Sbjct 258 AGATGCTCGCCATCAACGAGATCTAT-GAGAAGAATCCAACAACGATCAAGAACTTCGGT 316
Query 311 ATCTGGTTGCGTTATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGTACCGTGAC 370
|| |||||| | || |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 317 ATTTGGTTGAGGTACCAGAGCAGAACTGGGTACCACAACATGTACAAGGAATACCGTGAC 376
Query 371 ACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTCATAGAGTG 430
|| || || || || | || || ||||||||||||||||||||||||||||| | ||
Sbjct 377 ACCACTCTTAACGGAGCTGTTGAACAGATGTACACTGAGATGGCTTCTCGTCACCGTGTC 436
Query 431 AGGTTCCCTTGCATTCAGATCATCAAGACTGCGACTGTCCCTGCAAAGCTTTGCAAGAGA 490
|| |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 437 AGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCTGCCAAGCTGTGCAAGAGA 496
Query 491 GAGATCACCAAGCAGTTCCATAACT-CGAAGATCAAGTTCCCTCTTGTT-TTCAGGAAGG 548
|||| ||| || |||||||| ||| | |||||||||||||| ||| | ||| | ||||
Sbjct 497 GAGAGCACTAAACAGTTCCACAACAGC-AAGATCAAGTTCCCA-TTGGTGTTCCGCAAGG 554
Query 549 TCAGACCACCAAGCAGGAAGCTTAAGACTACATACAAGGC-ATCAAAACCTAACCTT-TT 606
| |||||||||||||||||||| ||||| || |||||||| | ||| || ||| || ||
Sbjct 555 TTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAAGCCC-AAC-TTGTT 612
Query 607 CATGTA 612
||||||
Sbjct 613 CATGTA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31565775276
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5