BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14610.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478880 jgi|Araly1|478880|fgenesh2_kg.3__1581__AT3G14610.1 2822 0.0
Ahg929245 jgi|Araly1|929245|scaffold_301702.1 182 1e-44
> Ahg478880 jgi|Araly1|478880|fgenesh2_kg.3__1581__AT3G14610.1
Length=1783
Score = 2822 bits (1528), Expect = 0.0
Identities = 1704/1789 (95%), Gaps = 11/1789 (1%)
Strand=Plus/Plus
Query 4 TTGTATAATCAAAACTCCAGTGACAGCCAAAAAGTCTCAATCTTTATAAAGACCCACAAA 63
|||||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1 TTGTATAATCGAAACTCCAGTGAAAGATAAAAAGTCTCAATCTTTATAAAGACCCACGAA 60
Query 64 AACTTGCGGACTCCAGAGTGAGTGTGAGAATCGGAGATGTCTTTTTCAGTAGTAGCAGCT 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACTTGCGGACTCCAGAGTGAGTGTGAGAATCGGAGATGTCTTTTTCAGTAGTAGCAGCT 120
Query 124 TTACCGGTGCTTGTAGCAGTAGTGGTACTGTGGACATGGCGGATCGTGAAGTGGGTCTGG 183
||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAGTGGTGGTTGTAGCACTAGTGGTACTGTGGACATGGCGGATCGTGAAGTGGGTCTGG 180
Query 184 ATAAAACCAAAGATGCTTGAGAGTT-CTTTGAAAAGACAGGGTCTTACCGGAA-CTCCTT 241
|||||||| ||||||||||||| || | ||| ||||||||||||| |||||| || |||
Sbjct 181 ATAAAACCGAAGATGCTTGAGAATTAC-CTGAGAAGACAGGGTCTTGCCGGAACCT-CTT 238
Query 242 ACACTCCTCTCGTCGGAGATATAAAGAGGAATGTTGATATGATGATGGAAGCGAGATCTA 301
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 ACACTCCTCTCGTCGGAGATATAAAGAGGAATGTTGATATGATGATGGAGGCGAGATCTA 298
Query 302 AACCCATCAATGTAACGGATGATATCACCCCACGTCTCCTTCCTCTTGCCTTAAAGATGC 361
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 AACCCATCAATATAACGGATGATATCACCCCACGTCTCCTTCCTCTTGCCTTGAAGATGT 358
Query 362 TCAATTCTCACGGAAAGACTTTCTTCATATGGATTGGACCACTTCCAACGATTGTGATAA 421
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TCAATTCTCACGGAAAGACTTTCTTCATATGGATTGGACCAATTCCAACGATTGTGATAA 418
Query 422 CGAATCCTGAGCAGATCAAGGAAG-TCTTTAATAAAGTCAACGACTTTGAGAAAGCTTCT 480
||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 419 CGAATCCTGAGCAGATCAAGG-AGATCTTTAATAAAGTTTACGACTTTGAGAAAGCTTCT 477
Query 481 ACATTCCCTTTGATCAGATTGTTAGCAGGTGGGCTTGCAAGTTACAAGGGAGATAAATGG 540
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 478 ACATTCCCTTTGATCAGATTGTTAGCAGGCGGGCTCGCGAGTTACAAGGGAGATAAATGG 537
Query 541 GCGAGTCACAGGAGGATCATCAACCCGGCTTTTCACCTCGAAAAAATCAAGAACATGATC 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 GCGAGTCACAGGAGGATCATCAACCCGGCTTTTCACCTCGAAAAGATCAAGAACATGATC 597
Query 601 CCTGCGTTCTACCATTGTTGCAGCGAGGTTGTCTGTCAATGGGAGAAGCTATTTACAGAT 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 CCTGCGTTCTACCATTGTTGCAGCGAGGTTGTCTGCCAATGGGAGAAGCTATTTACAGAT 657
Query 661 AAAGAATCGCCTCTTGAAGTCGATGTTTGGCCTTGGCTTGTGAATATGACTGCGGATGTC 720
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAGAATCGCCTCTTGAAGTAGATGTTTGGCCTTGGCTTGTGAATATGACTGCGGATGTG 717
Query 721 ATCTCACATACTGCTTTTGGAAGTAGCTATAAAGAAGGGCAGAGAATATTT-CAACTACA 779
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 718 ATCTCACATACTGCTTTTGGAAGCAGCTATAAAGAAGGGCAGAGAAT-TTTCCAACTACA 776
Query 780 AGGGGAATTGGCTGAGCTTATCGCACAAGCTTTTAAGAAATCTTACATCCCTGGATCGAG 839
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 777 AGGGGAATTGGCTGAGCTCATAGCACAAGCTTTCAAGAAATCTTACATCCCTGGATCGAG 836
Query 840 GTTTTACCCAACAAAGAGCAATAGAAGGATGAAAGCAATAGATAGAGAAGTAGACGTAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTTTTACCCAACAAAGAGCAATAGAAGGATGAAAGCAATAGATAGAGAAGTAGACGTAAT 896
Query 900 ATTGAGAGGTATTGTGAGCAAACGGGAGAAAGCGAGAGAAGCTGGAGAACCAGCAAACGA 959
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 ACTGAGAGGTATTGTGAGCAAACGGGAGAAAGCAAGAGAAGCTGGAGAACCAGCAAACGA 956
Query 960 TGATTTGTTGGGGATATTGCTTGAATCCAATTCAGAGGAATCTCAAGGAAATGGAATGAG 1019
|||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 957 TGATTTGTTGGGGATACTGCTCGAATCAAATTCAGAGGAATCTCAAGGAAATGGAATGAG 1016
Query 1020 CGTAGAAGATGTGATGAAAGAGTGCAAGTTGTTTTATTTCGCGGGACAAGAGACAACTTC 1079
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1017 CGTAGAAGAAGTGATGAAAGAGTGCAAGTTGTTTTATTTTGCGGGACAAGAGACAACTTC 1076
Query 1080 AGTACTTTTGGTGTGGACTATGGTTTTATTAAGCCATCACCAAGACTGGCAAGCTCGCGC 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGTACTTTTGGTCTGGACTATGGTTTTATTAAGCCATCACCAAGACTGGCAAGCTCGCGC 1136
Query 1140 ACGAGAGGAAGTGATGCAAGTACTCGGTGAAAATAATAAACCTGATATGGAGTCCCTTAA 1199
|||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1137 ACGAGAGGAAGTGAGGCAAGTACTCGGTGAAAATAATAAACCCGATTTGGAGTCCCTTAA 1196
Query 1200 CAACCTTAAAGTCATGACTATGATCTTCAATGAGGTTTTGAGGCTATACCCTCCGGTGGC 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CAACCTGAAAGTCATGACTATGATCTTCAATGAGGTTTTGAGGCTATACCCTCCGGTGGC 1256
Query 1260 TCAGCTTAAACGAGTTGTCAACAAAGAAATGAAGCTCGGAGAGTTGACCCTTCCAGCTGG 1319
|||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1257 TCAGCTTAAACGAGCTGTCAACAAAGAAATGAAGCTAGGAGAGTTTACCCTTCCAGCTGG 1316
Query 1320 AATTCAAATTTACTTACCAACTATTCTTGTCCAGCGTGACACCGAGCTTTGGGGCGATGA 1379
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1317 AATTCAAATTTATTTACCAACCATTCTTGTCCAGCGCGACACCGAGCTTTGGGGCGATGA 1376
Query 1380 TGCAGCGGATTTTAAACCCGAGCGGTTCAGAGACGGGCTCTCAAAGGCAACAAAGAACCA 1439
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGCAGCGGATTTTAAACCTGAGCGGTTCAGAGACGGGCTCTCAAAGGCAACAAAGAACCA 1436
Query 1440 GGTCTCTTTCTTCCCCTTTGGATGGGGACCTAGGATTTGCATCGGTCAGAATTTTGCTAT 1499
|||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1437 GGTCTCCTTCTTTCCCTTTGGGTGGGGACCAAGGATTTGCATCGGTCAGAATTTTGCTAT 1496
Query 1500 GTTGGAGGCAAAGATGGCAATGGCTTTGATTCTACA-AAAGTTCTCCTTCGAGCTCTCTC 1558
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1497 TTTGGAGGCAAAGATGGCAATGGCTTTGATTCTACACAAA-TTCTCCTTCGAGCTCTCTC 1555
Query 1559 CTTCTTATGTTCACGCGCCTCAAACAGTCATGACCACTCGTCCCCAATTCGGAGCTCATC 1618
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1556 CTTCTTATGTTCACGCGCCTCAAACAGTCATGACCACTCGTCCGCAATTCGGAGCTCATC 1615
Query 1619 TAATTCTGCACAAGCTCTGATTTTGTATATCCATGGATATGTCATCAAAAGTCTCATATT 1678
|||| ||| |||||||||||||||||| |||||| | ||||||||| ||| |||| |||
Sbjct 1616 TAATCCTGTGCAAGCTCTGATTTTGTATTTCCATGAAGATGTCATCAGAAGACTCA-ATT 1674
Query 1679 ATGTAACAAAAAGATGTCATAGAAAGCCCTGTAGCCATATGTTGTGAAATTGTCAATATC 1738
|||||||||||| ||| ||||||||| | ||||||| |||||||||||||| ||||||||
Sbjct 1675 ATGTAACAAAAATATGACATAGAAAGGCTTGTAGCCGTATGTTGTGAAATTTTCAATATC 1734
Query 1739 TTTGTCTGAAACTAGTCGCTATTCTATAAGGTAAAAGTCTTCTTCAGTC 1787
|||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1735 TTTGTCTGAAACTAGTAGCTATTCTCTAAGGTAAAGGTCTTCTTCAGTC 1783
> Ahg929245 jgi|Araly1|929245|scaffold_301702.1
Length=319
Score = 182 bits (98), Expect = 1e-44
Identities = 119/129 (92%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 1033 ATGAAAGAGTGCAAGTTGTTTTATTTCGCGGGACAAGAGACAACTTCAGTACTTTTGG-T 1091
||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 23 ATGGAAGATTGCAAGTTGTTTTATTTCGCGGGACAAGAGACCACTTCAGTACTTTTGGCT 82
Query 1092 GTGGACTATGGTTTTATTAAGCCATCACCAAGACTGGCAAGCTCGCGCACGAGAGGAAGT 1151
||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 83 -TGGACTATGGTCTTGTTAAGCCAACACCAAGACTGGCAAGCTCGCGCACGAGAAGAAGT 141
Query 1152 GATGCAAGT 1160
| |||||||
Sbjct 142 GGTGCAAGT 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5