BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14630.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478882 jgi|Araly1|478882|fgenesh2_kg.3__1583__AT3G14660.1 1057 0.0
Ahg478880 jgi|Araly1|478880|fgenesh2_kg.3__1581__AT3G14610.1 704 0.0
Ahg929245 jgi|Araly1|929245|scaffold_301702.1 318 6e-86
> Ahg478882 jgi|Araly1|478882|fgenesh2_kg.3__1583__AT3G14660.1
Length=1621
Score = 1057 bits (572), Expect = 0.0
Identities = 1224/1533 (80%), Gaps = 68/1533 (4%)
Strand=Plus/Plus
Query 25 GCTTTAGTTGTTGTATTGTGGTGTATATGGAGAATTTTGGAGTGGGTTTGGCTTAAACCT 84
||| ||| |||||| | |||||| |||||||||| ||| ||||||||||| |||| ||
Sbjct 52 GCTATAGCTGTTGTGTCGTGGTGGATATGGAGAACTTTACAGTGGGTTTGGTTTAAGCCA 111
Query 85 AAGATGCTTGAGAGTTACCTGAGAAGACAAGGTCTTGTCGGAACTCGTTACACGCCTCTT 144
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 112 AAGATGCTTGAGAGTTACCTGAGAAGACAAGGTCTTGTCGGAACTCCTTACACGCCTCTT 171
Query 145 GTAGGAGATGTGA-GAAGGAGTTTTAGCATGTTGAAGGAAGCAAGATCCAAACCGATGAA 203
|| || ||| | | || ||| ||| |||||| || || |||||||||||||| || ||
Sbjct 172 GTCGGCGATTTAAAGA-GGAATTTCAGCATGCTGGCTGAGGCAAGATCCAAACCCATCAA 230
Query 204 ACCAACGGATGATCTCATCTCACTTGT--CATGCCTTA-CTCTTTTCACATGCTCAACAC 260
| ||| |||||| ||| | | || || | ||||||| | ||| || ||| |||| ||
Sbjct 231 TCTAACAGATGATATCA-CAC-CTCGTATCGTGCCTTATCCCTTG-CAAATGTTCAAGAC 287
Query 261 TTACGGGAAGA-CATTT-T-TCACATGG-TCAGGACCCATACCTGCCATAACAATAATGA 316
|||||||| || | ||| | | |||||| | ||||||||||| | || || ||||||
Sbjct 288 TTACGGGA-GAAC-TTTCTAT-ACATGGCTT-GGACCCATACCAACAATCACCATAATGG 343
Query 317 ATCCACAGCTGATCAAAGAAGTGTACAACAA-GTTTTATGATTTCGAGAAGA-CGCACAC 374
|||| ||| ||||| ||||||| |||||| |||| |||||||| |||| | | || ||
Sbjct 344 ATCCTGAGCAAATCAAGGAAGTGTTCAACAAAGTTT-ATGATTTCCAGAA-ATCACATAC 401
Query 375 GTTTCCTTTGACTTCATTGCTAACTGATGGACTTGCTAATGCCGATGGAGATAAATGGGT 434
||| |||||| | ||| || | | |||||| | || | ||||| ||||||||||
Sbjct 402 GTTCCCTTTGGCCAGATTAATAGCCGCTGGACTCGTTAGTTATGATGGTGATAAATGGGC 461
Query 435 GAAACACCGGAAGATT-ATCAACCCGGCATTCCATTTTGAGAAGATTAAGAATATGGTCC 493
||||||||| |||| | |||||||| || ||||| |||||||||| ||||||||||| |
Sbjct 462 GAAACACCG-AAGAATCATCAACCCAGCTTTCCACCTTGAGAAGATCAAGAATATGGTAC 520
Query 494 CTACGTTTTATAAAAGTTGCATCGAGGTCATGTGTG---AATGGGAGAAGTTAGTTTCAG 550
|| |||| | || || | |||||| ||| || ||||||| |||||||| || |
Sbjct 521 CTGCGTTCCACCTGAGCTGTAGCGAGGT--TGT-TGGCCAATGGGATAAGTTAGTGTCGG 577
Query 551 ATAAAGGGTCGTCGTGCGAGCTTGATGTTTGGCCATGGA-TTGTGAATATGACCGGAGAT 609
||||||| | ||| || ||| | ||| ||||||| ||| |||||| |||||| | ||||
Sbjct 578 ATAAAGGCTTGTCATGTGAGGTAGATATTTGGCC-TGGGCTTGTGAGTATGACTGCAGAT 636
Query 610 GTGATCTCTCGAACCGCTTTTGGTAGCAGTTACAAAGAAGGACAGAGGATATTC-ATATT 668
||||||||||| || |||||||| ||||| ||||||||||| |||||||| || | |
Sbjct 637 GTGATCTCTCGTACAGCTTTTGGCAGCAGCTACAAAGAAGGGCAGAGGATCTTTGAGCTC 696
Query 669 ACAAGCAGAATTAGCCCACCTCATCATACTAGCTCTT-GGAAAGAATTACATTCCTGCAT 727
||||||||| |||| || |||||||| | |||| || |||||| || ||| |||| ||
Sbjct 697 -CAAGCAGAACTAGCACAGCTCATCATTCAAGCTTTTAGGAAAGCTTT-CATCCCTGGAT 754
Query 728 ACCGGCATTTCCCAACTAA-GAATAACAGAAGGATGAAAACAATAGTCAA-AGAAATCCA 785
| || ||||||| || | ||||||||| |||||| ||| || ||| |||||||||
Sbjct 755 TTAGTTATCTCCCAACAAAAGG-TAACAGAAGAATGAAAGCAAAAG-CAAGAGAAATCCA 812
Query 786 AGTCATACTAAGAGGGATCATTAGCCATAGAGAAAAGG-CGAGAGACGCTGGAGAAGCAC 844
||| ||||| ||||||||| ||| | | || | |||| | || || ||||| |||||||
Sbjct 813 AGTTATACTGAGAGGGATCGTTAACAAAAG-GTTAAGGGCCAGGGAAGCTGGGGAAGCAC 871
Query 845 CGAGTGACGATTTGTTAGGTATACTTCTTAAATCGAATTCAGAG-CAAA-GTAAAGGAAA 902
| || ||||||||| | || ||||||||| |||| |||| ||| |||| | || |||||
Sbjct 872 CAAGCGACGATTTGCTGGGAATACTTCTTGAATCAAATTT-GAGGCAAACGGAA-GGAAA 929
Query 903 TGGACTGA--ACATGGAAGAAATCATGGAAGAGTGCAAGTTGTTTTATTTTGC-GGGACA 959
||| ||| || || | || | ||||| |||||||||||||| ||||| || ||| ||
Sbjct 930 CGGAATGAGTAC-TG-AGGATCTGATGGAGGAGTGCAAGTTGTTCTATTTCGCCGGG-CA 986
Query 960 AGAGACCACTTCAGTACTTTTGGCTTGGACTATGGTTTTGTTAAGCCAACACCAAGACTG 1019
||||||||| ||||||||| ||| |||||| ||| || ||||||| ||||||||||| ||
Sbjct 987 AGAGACCACATCAGTACTTCTGGTTTGGACAATGATTCTGTTAAGTCAACACCAAGATTG 1046
Query 1020 GCAAGCTCGTGCACGAGAGGAAGTGATGCAAGTTTTTGGCCATAACA-AACCTGAT-CTA 1077
||| |||||||||||||| ||||||| ||||||||||||| |||| | |||| ||| | |
Sbjct 1047 GCAGGCTCGTGCACGAGAAGAAGTGAAGCAAGTTTTTGGCGATAA-AGAACCGGATGC-A 1104
Query 1078 CAAGGCATT-AACCAACTCAAAGTTATGACAATGATTAT-ATATGAAGTCCTGAGGCTAT 1135
|||| | | ||||| |||||||||||| | ||||| || |||||| ||||| |||||||
Sbjct 1105 GAAGG-ACTCAACCAGCTCAAAGTTATGTCGATGAT-ATTATATGAGGTCCTCAGGCTAT 1162
Query 1136 ATCCTCCAGTAATCCAGATGAACAGAGCGACTCACAAAGAGATAAAGCTAGGTGATATGA 1195
|||||||||||| |||| ||| | |||| | |||||||||||| |||||||| ||| |||
Sbjct 1163 ATCCTCCAGTAACCCAGCTGACCCGAGCCATTCACAAAGAGATGAAGCTAGGCGATCTGA 1222
Query 1196 CACTACCAGGCGGTATTCA-AGTCCA-TATGCCTGTTCTGCTAATCCACCGTGACACTAA 1253
| |||||||||||| |||| | || | | | ||| |||||||| |||| |||||||| |
Sbjct 1223 CGCTACCAGGCGGTGTTCAGA-TC-AGTCTACCTATTCTGCTAGTCCAACGTGACACGGA 1280
Query 1254 GCTTTGGGGCGATGATGCAGCGGAGTTCAAGCCCGAGAGGTTCAAAGACGGGATCGCAAA 1313
||| ||||| | |||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 1281 GCTGTGGGGAAAGGATGCAGCGGAGTTCAAGCCAGAGAGATTCAAAGACGGTCTTTCAAA 1340
Query 1314 GGCAACAAAGAACCAGGTCTGC-TTCTTGCC-TTTCGGGTGGGGACCGAGGATTTGCATC 1371
||||||||||| ||| |||| | ||||| || ||| | ||||||||||||||| ||||||
Sbjct 1341 GGCAACAAAGAGCCAAGTCT-CATTCTTTCCCTTT-GCGTGGGGACCGAGGATATGCATC 1398
Query 1372 GGTCAGAACTTCGCTCTGTTGGAAGCAAAGATGGCTCTGGCTTTGATTCTTCAGAGATTC 1431
|| ||||| || || |||||||| ||||||||||| |||| |||||||| ||||||||
Sbjct 1399 GGCCAGAATTTTGCCCTGTTGGAGGCAAAGATGGCAATGGCATTGATTCTGAAGAGATTC 1458
Query 1432 TCCTTCGAGCTTTCACCTTCCTATGTTCATTCACCTTACAGAGTCTTCACTATACATCCA 1491
||||| ||||| || ||||||||||| ||| | ||||||| |||| |||| || || |||
Sbjct 1459 TCCTTTGAGCTCTCTCCTTCCTATGTCCATGCGCCTTACACAGTCATCACCATTCACCCA 1518
Query 1492 CAGTGTGGG-GCTCATCTTATCCTGCACAAGCT 1523
|| | | || ||||| |||||| ||||||||||
Sbjct 1519 CAAT-TCGGTGCTCAGCTTATCATGCACAAGCT 1550
> Ahg478880 jgi|Araly1|478880|fgenesh2_kg.3__1581__AT3G14610.1
Length=1783
Score = 704 bits (381), Expect = 0.0
Identities = 1154/1515 (76%), Gaps = 101/1515 (7%)
Strand=Plus/Plus
Query 65 AGTGGGTTTGGCTTAAACCTAAGATGCTTGAGAGTTACCTGAGAAGACAAGGTCTTGTCG 124
||||||| ||| | ||||| ||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 170 AGTGGGTCTGGATAAAACCGAAGATGCTTGAGAATTACCTGAGAAGACAGGGTCTTGCCG 229
Query 125 GAA-CTCGTTACACGCCTCTTGTAGGAGATGTGAGA-AGGAGT-TTTAGCATGTTGAAGG 181
||| ||| |||||| ||||| || |||||| | | | |||| | || | ||| ||| ||
Sbjct 230 GAACCTC-TTACACTCCTCTCGTCGGAGATAT-AAAGAGGAATGTTGA-TATGATGATGG 286
Query 182 AAGCAAGATCCAAACCGATGAA-ACCAACGGATGATCTCATCTCACTTGTCATGCCTTAC 240
| || ||||| ||||| || || | |||||||||| ||| | ||| ||| | |||| |
Sbjct 287 AGGCGAGATCTAAACCCATCAATA-TAACGGATGATATCACCCCAC--GTC-T-CCTTCC 341
Query 241 TCTT---TT-CACATGCTCAACACTTACGGGAAGACATTT-TTCACATGG-TCAGGACCC 294
|||| || | ||| |||| || |||| ||||| ||| |||| |||| | |||||
Sbjct 342 TCTTGCCTTGAAGATGTTCAATTCTCACGGAAAGAC-TTTCTTCATATGGAT-TGGACCA 399
Query 295 ATACCTGCCATAACAATAATGAATCCACAGCTGATCAAAGAAG-TGTACAA-CAAGTTTT 352
|| || | || |||| |||||| ||| |||| ||| || | | || ||| |||
Sbjct 400 ATTCCAACGATTGTGATAACGAATCCTGAGCAGATC-AAGGAGATCTTTAATAAAG-TTT 457
Query 353 ATGA-TTTCGAGAAGACGC-AC-ACGTTTCCTTTGACTTC--ATTGCTAACTGATGGACT 407
| || ||| ||||| | || | || || ||||||| || |||| || | | || ||
Sbjct 458 ACGACTTT-GAGAA-A-GCTTCTACATTCCCTTTGA--TCAGATTGTTAGCAGGCGGGCT 512
Query 408 TGCTAATGCCGATGGAGATAAATGGGTGAAACACCGGAAGATTATCAACCCGGCATTCCA 467
|| | | | | ||||||||||||| || ||| ||| ||| ||||||||||| || ||
Sbjct 513 CGCGAGTTACAAGGGAGATAAATGGGCGAGTCACAGGAGGATCATCAACCCGGCTTTTCA 572
Query 468 TTTTGAGAAGATTAAGAATATGGTCCCTACGTTTTATAAAAGTTGCATCGAGGTCATGTG 527
| || ||||| ||||| ||| ||||| |||| || | |||||| |||||| |||
Sbjct 573 CCTCGAAAAGATCAAGAACATGATCCCTGCGTTCTACCATTGTTGCAGCGAGGT--TGTC 630
Query 528 TG--AATGGGAGAAGTTAGTTT-CAGATAAAGGGTCG--TCGTGCGAGCTTGATGTTTGG 582
|| ||||||||||| || ||| ||||||||| ||| || || || | |||||||||
Sbjct 631 TGCCAATGGGAGAAGCTA-TTTACAGATAAAGAATCGCCTCTTG-AAG-TAGATGTTTGG 687
Query 583 CCATGGATTGTGAATATGACCG-GAGATGTGATCTCTCGA-ACCGCTTTTGGTAGCAGTT 640
|| ||| ||||||||||||| | | ||||||||||| | | || |||||||| ||||| |
Sbjct 688 CCTTGGCTTGTGAATATGACTGCG-GATGTGATCTCAC-ATACTGCTTTTGGAAGCAGCT 745
Query 641 ACAAAGAAGGACAGAGGATATT-CATATTACAAGCAGAATTAGCCCACCTCATCA-TACT 698
| |||||||| ||||| || || || | |||||| ||||| || | ||||| | ||
Sbjct 746 ATAAAGAAGGGCAGAGAATTTTCCA-ACTACAAGGGGAATTGGCTGAGCTCAT-AGCACA 803
Query 699 AGCTCTTGGAAAG-AA--TTACATTCCTGCATACCG-GCATTT-CCCAACTAAGAATAAC 753
|||| || ||| || |||||| |||| || || | ||| |||||| |||| ||
Sbjct 804 AGCT-TT--CAAGAAATCTTACATCCCTGGAT--CGAGGTTTTACCCAACAAAGAGCAAT 858
Query 754 AGAAGGATGAAAACAATAG-TCAAAGAAATCCAAGTCATACTAAGAGGGATCATTAGCCA 812
|||||||||||| |||||| | | |||| | | || ||||| ||||| || | || ||
Sbjct 859 AGAAGGATGAAAGCAATAGAT-AGAGAAGTAGACGTAATACTGAGAGGTATTGTGAG-CA 916
Query 813 TA-GAGA-AAAGGCGAGAGACGCTGGAGAAGCACCGAGTGACGATTTGTTAGGTATACTT 870
| | || ||| || ||||| ||||||||| || | | || |||||||| || |||||
Sbjct 917 AACGGGAGAAA-GCAAGAGAAGCTGGAGAACCAGCAAACGATGATTTGTTGGGGATACTG 975
Query 871 CTTAAATCGAATTCAGAGCAAAGTAAAGGAAATGGACTGAACATGGAAGAAATCATGGAA 930
|| |||| ||||||||| || | ||||||||||| ||| | | |||||| | ||| ||
Sbjct 976 CTCGAATCAAATTCAGAGGAATCTCAAGGAAATGGAATGAGCGTAGAAGAAGTGATGAAA 1035
Query 931 GAGTGCAAGTTGTTTTATTTTGCGGGACAAGAGACCACTTCAGTACTTTTGG-CTTGGAC 989
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 1036 GAGTGCAAGTTGTTTTATTTTGCGGGACAAGAGACAACTTCAGTACTTTTGGTCT-GGAC 1094
Query 990 TATGGTTTTGTTAAGCCAACACCAAGACTGGCAAGCTCGTGCACGAGAGGAAGTGATGCA 1049
||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 1095 TATGGTTTTATTAAGCCATCACCAAGACTGGCAAGCTCGCGCACGAGAGGAAGTGAGGCA 1154
Query 1050 AGTTTTTGGCCA---TAACAAACCTGATCTACAAGGCA-TTAACCAAC-TCAAAGTTATG 1104
||| | || | ||| ||||| ||| | | | | ||||| ||| | ||||| |||
Sbjct 1155 AGTACTCGGTGAAAATAATAAACCCGATTTGGA-GTCCCTTAAC-AACCTGAAAGTCATG 1212
Query 1105 ACAATGAT-TAT-ATATGAAGTCCTGAGGCTATATCCTCCAGTAA-TCCAGATGAA-CAG 1160
|| ||||| | | | |||| || |||||||||| ||||| || || || | || | |
Sbjct 1213 ACTATGATCT-TCA-ATGAGGTTTTGAGGCTATACCCTCCGGTGGCTC-AGCTTAAAC-G 1268
Query 1161 AGC-GACTCA-CAAAGAGATAAAGCTAGGTGA-TATGACACTACCAGGC-GGTATTCAAG 1216
||| | ||| |||||| || |||||||| || | | || || |||| | || ||||||
Sbjct 1269 AGCTG--TCAACAAAGAAATGAAGCTAGGAGAGTTT-ACCCTTCCAG-CTGGAATTCAAA 1324
Query 1217 TCCATATGCCTGTTC-TGCTAATCCACCGTGACACTAAGCTTTGGGGCGATGATGCAGCG 1275
| || | || | | || |||| || ||||| |||||||||||||||||||||||
Sbjct 1325 TTTATTTACCAAC-CATTCTTGTCCAGCGCGACACCGAGCTTTGGGGCGATGATGCAGCG 1383
Query 1276 GAGTTCAAGCCCGAGAGGTTCAAAGACGGGATCGCAAAGGCAACAAAGAACCAGGTCTGC 1335
|| || || || ||| |||||| ||||||| || |||||||||||||||||||||||| |
Sbjct 1384 GATTTTAAACCTGAGCGGTTCAGAGACGGGCTCTCAAAGGCAACAAAGAACCAGGTCTCC 1443
Query 1336 TTCTTGCC-TTTCGGGTGGGGACCGAGGATTTGCATCGGTCAGAACTTCGCTCTGTTGGA 1394
||||| || ||| ||||||||||| |||||||||||||||||||| || ||| | |||||
Sbjct 1444 TTCTTTCCCTTT-GGGTGGGGACCAAGGATTTGCATCGGTCAGAATTTTGCTATTTTGGA 1502
Query 1395 AGCAAAGATGGCTCTGGCTTTGATTCTTCAGAGATTCTCCTTCGAGCTTTCACCTTCCTA 1454
||||||||||| ||||||||||||| || | ||||||||||||||| || ||||| ||
Sbjct 1503 GGCAAAGATGGCAATGGCTTTGATTCTACACAAATTCTCCTTCGAGCTCTCTCCTTCTTA 1562
Query 1455 TGTTCATTCACCTTACAGAGTCTTCACTA-TACATCCACAGTGTGGG-GCTCATCTTATC 1512
|||||| | ||| | | |||| | || | | | ||| || | | || |||||||| |||
Sbjct 1563 TGTTCACGCGCCTCAAACAGTCATGACCACT-CGTCCGCAAT-TCGGAGCTCATCTAATC 1620
Query 1513 CTGCACAAGCTTTGA 1527
||| |||||| |||
Sbjct 1621 CTGTGCAAGCTCTGA 1635
> Ahg929245 jgi|Araly1|929245|scaffold_301702.1
Length=319
Score = 318 bits (172), Expect = 6e-86
Identities = 191/200 (96%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 903 TGGACTGAACA-TGGAAGAAATCATGGAAGAGTGCAAGTTGTTTTATTTTGCGGGACAAG 961
||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1 TGGACTGAACACT-GAAGAAATCATGGAAGATTGCAAGTTGTTTTATTTCGCGGGACAAG 59
Query 962 AGACCACTTCAGTACTTTTGGCTTGGACTATGGTTTTGTTAAGCCAACACCAAGACTGGC 1021
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 AGACCACTTCAGTACTTTTGGCTTGGACTATGGTCTTGTTAAGCCAACACCAAGACTGGC 119
Query 1022 AAGCTCGTGCACGAGAGGAAGTGATGCAAGTTTTTGGCCATAACAAACCTGATCTACAAG 1081
||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 120 AAGCTCGCGCACGAGAAGAAGTGGTGCAAGTTTTTGGCGATAACAAACCTGATCTACAAG 179
Query 1082 GCATTAACCAACTCAAAGTT 1101
||||||||||||||||||||
Sbjct 180 GCATTAACCAACTCAAAGTT 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5