BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14700.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929248 jgi|Araly1|929248|scaffold_301705.1 917 0.0
> Ahg929248 jgi|Araly1|929248|scaffold_301705.1
Length=634
Score = 917 bits (496), Expect = 0.0
Identities = 590/635 (93%), Gaps = 8/635 (1%)
Strand=Plus/Plus
Query 292 TCTCAGTCCAAAGTAGCTATGAAAAAAGATTC-GATGAGGAAGAATAAGAAATTGGTTAT 350
||||||||||||||||||||||| || ||||| | ||||||||||||||||| | |||||
Sbjct 3 TCTCAGTCCAAAGTAGCTATGAAGAAGGATTCTG-TGAGGAAGAATAAGAAACTCGTTAT 61
Query 351 AAATATTGCTCTAGATAAAGAAGTTCTTGCTTCGAGAGTGGAAGCTGATCATGATCTTGG 410
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 62 AAATATTGCTCTAGATAAAGAAGTTCTTGCTTCGCGATTAGAAGCTGATCATGATCTTGG 121
Query 411 TTCTGTAAGAGATGAGAAAGAGAGGCTTGAATCATCAGAGAGACGAAGAGA---GGTTTG 467
|||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 122 TTCTCTAAGAGATGAGAAAGAGAGGTTTGAATCATCAGAGAGAAGAAGAGATGTGGTTTG 181
Query 468 TTCCAAAGCTGAAGATATTGTTGATAAGGCCATTGATAATCATTCTAGGGTTAGAGGAGA 527
||||||||||||||||||| |||||||||| | | || |||||||||| |||||||||||
Sbjct 182 TTCCAAAGCTGAAGATATTTTTGATAAGGCAACTAATGATCATTCTAGTGTTAGAGGAGA 241
Query 528 TGGGATTATGCGGGAAGCTGATGTCGGGACAGGGTTATCGGGCGCGTTAAACCGTCTTAG 587
|||||| |||||||| | ||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 242 TGGGATCATGCGGGAGGTTGATGTCGGAACAGGATTATCGGGCGCGTTAAACCGTCTGAG 301
Query 588 AGAGCAAGGAACTTTCAAGGAGGAAGGCAAGGTTGTTGGTGTTAAGGACAATAATCATGA 647
||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||
Sbjct 302 AGAGCAAGGAACTTTCAAGGAGGAAAGCAAGATTGTAGGTGTTAAGGAC---AATCATGA 358
Query 648 AGATGACAGATTCAAAGATAGATTTAAGGATATACAGATTCAGAGGGTGAACAAGTGGGG 707
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 359 AGATGACAGATTCAAAGATAGATTTAAGGATATAGAGATTCAGAGGGCGGACAAGTGGGG 418
Query 708 AAGGATAATGACTGAGAAAGAAGCGTATCGGTCACTGTGTCATGGATTCCATGGGAAGGG 767
||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 AAGGATATTGACTGAGAAGGAAGCGTATCGGTCACTGTGTCATAGATTCCATGGGAAGGG 478
Query 768 ACCTGGGAAGAAGAAGCAAGAGAAACAGAGGAAGAAGCATGAAGATAAGTCAAAACAGAT 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCCTGGGAAGAAGAAGCAAGAGAAACAGAGGAAGAAGCATGAAGATAAGTCAAAACAGAT 538
Query 828 GGAATCTTCAGAGAGATCTGTGGAAAGAATAAGAGAAATTCATGCCATATCCAAGACTCC 887
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||
Sbjct 539 GGAATCTTCAGAGAGAGCTGTGGAAAGAATTAGAGAAGTTCATGCCATATCCAAGAGTCC 598
Query 888 TTACATTGTTCTCTAGTCATAAACTTCTCTTTGAT 922
||||||||||||||| |||||||||||||||||||
Sbjct 599 TTACATTGTTCTCTAATCATAAACTTCTCTTTGAT 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5