BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14710.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478883 jgi|Araly1|478883|fgenesh2_kg.3__1584__AT3G14710.1 1881 0.0
> Ahg478883 jgi|Araly1|478883|fgenesh2_kg.3__1584__AT3G14710.1
Length=1332
Score = 1881 bits (1018), Expect = 0.0
Identities = 1234/1338 (92%), Gaps = 15/1338 (1%)
Strand=Plus/Plus
Query 1 ATGCATCCCGAGACAGAGCAAG--CCTGTT--T-A--GTTCCATCTTCCAAGAAGACTAA 53
|||||||| |||||||| |||| ||| || | | ||| || ||||||||||||||||
Sbjct 1 ATGCATCCAGAGACAGAACAAGCCCCT-TTAGTGACGGTTTCACCTTCCAAGAAGACTAA 59
Query 54 GCTATGCAGTGAGAACTTTGAAGACAAATTCAGCAGCTTGCTTGAGAGTGTTGTTAGCAT 113
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 60 GCTATGCAGTGAGAACTTTGAAGACAAATTCAGCAGCTTGCATGAGAGTGTTCTTAGCAG 119
Query 114 AATTCTT-AGTCAACTTCCAACTGCTGAAGCTGTTAGTACTTCTGTGTTATCAAAGTCAT 172
|||| || |||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 AATT-TTGAGTCAACTTCAAACTGTTGAAGCTGTTAGTACTTCTGTGTTATCAAAGTCAT 178
Query 173 GGAAGAACATTTGGACAAACATCACAGATTTACATTTTGATGATACAAAGCAGAGGGATC 232
||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 179 GGAGGAACATGTGGACAAACATCACAGAGTTACATTTTGATGATCCAAAGCAGAGGGATC 238
Query 233 CGAGTGATTCTCGATTTACTGACTTCGTTGAGCGTGTGGTTGGCGACATTGGAAGTCCGC 292
||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 239 CGAGTGATTCTCGGTTTACTGACTTCGTTGAGCGTGTGCTTAGCGACATTGGAAGTCCGC 298
Query 293 ACATTAGCAGTTTCTATCTATGCTCTGTTAATACTTTCGATGAGACTCTTCTCTTCTCGT 352
| |||| ||||||| ||||| | ||||||||| ||| |||||||||||||||||||||||
Sbjct 299 AGATTAACAGTTTCCATCTACGTTCTGTTAATTCTTACGATGAGACTCTTCTCTTCTCGT 358
Query 353 GGTTATCAAAGGTACTAAAGCGCAATCTTCAGAGACTTGTTGTCACTTGCAACGATCTAG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 GGTTATCAAAGGTACTAAAGCGCAATCTTCAGAGACTTGTTGTCACTTGCAACGATCTTG 418
Query 413 AGATCATCAGTTTTTCTTCACTTTTTCCTAGTTTTGTTTCGCTTGTGGAGTTAAGGCTCC 472
| ||||||| ||||||| | |||||||||||| |||||||||||||||||||||| ||||
Sbjct 419 AAATCATCAATTTTTCTCCTCTTTTTCCTAGTCTTGTTTCGCTTGTGGAGTTAAGACTCC 478
Query 473 GTACAAAAAGCATTCTTGACATTTCGGCTCCCGCTATTCTCCCGAACCTTAAGTTCCTTA 532
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |||
Sbjct 479 GTACAAAGAGCATTCTTGACATTTCGGCTCCTGCTCTTCTCCCGAACCTTAAGTTCTTTA 538
Query 533 GTCTCGAGGATGCTAGAATCTTCAACATGTCTTCTGTCTCAAAGAACCTCGTTCTGAACT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCTCGAGGATGCTAGAATCTTCAACATGTCTTCTGTCTCAAAGAACCTCGTTCTGAACT 598
Query 593 TTCCTGTCTTGGAAACTTTTGAAGCCTCTTATTGCCGCTGCTTTAGAACCGATACTGTGA 652
|||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 599 TTCCTGTCCTGGAAACTTTTGAAGCCTCTTATTGCTGCTACTTTAGAACCGATACTGTGA 658
Query 653 TCATAGACTCTCC-ATTGCTTAGGATCTTTGAGATGTTCAAGTGTACATCTGAACACGTA 711
|| |||| ||||| || ||| ||||||||||||||||| |||||||| |||||||| |||
Sbjct 659 TCCTAGATTCTCCGAT-GCTCAGGATCTTTGAGATGTTTAAGTGTACCTCTGAACATGTA 717
Query 712 CCTAATCCTTCTCAAGTGTGTAAGATCAGGGTGTTAGCTTCAAAGCTTGAGAAAATCACA 771
|| ||| | || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 CCGAAT--T-CTGAAGTGTGTAAGATCAGGGTGTTAGCTTCAAAGCTTGAGAAAATTACA 774
Query 772 TTCTGTGGAGACGAACCCCGAAAAATCCATCTGTCTTTTCCACCGTCTTTACCTGATGCT 831
|||| || ||||| ||||||| || | |||||||||||||||||||||||||||||||
Sbjct 775 TTCTCCGGGGACGATTCCCGAAAGATTCGTCTGTCTTTTCCACCGTCTTTACCTGATGCT 834
Query 832 TATCTTGCCCTCAGCAGATCCGAGTGGCCCAAGACGTTTCTACGTAGCTTCACATGCGTG 891
||||| |||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 835 TATCTAGCCCTCAGCAAATCGGAGTGGCCCAAGAAGTTTCTACATAGCTTCACATGCGTG 894
Query 892 ACGAGTTTGGCTCTCGTGCTTAGCAAGGATTTTCATGTGATGGCAGTACCCAAATTCAGC 951
| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 895 AATAGTTTGGCTCTCGAGCTTAGCAAGGATTTTCATGTGATCGCAGTACCCAAATTCAGA 954
Query 952 CAGTTGGTATACCTGCATTTGATATACGACATGACACAACATTTTAGATTAATGCAGTTC 1011
|||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 955 CAGTTGGTTTACCTGCATTTGATATACGACATGACACAACATTGTAAATTAATTCAGTTC 1014
Query 1012 CTTAAATCCGCACCAATACTCGAGATGCTCAGCATCCGCGACCTGACATCTCCTCGTTCA 1071
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CTCGAATCCGCACCAATACTCGAGATGCTCAGCATCCGCGACCTGACATCTCCTCGTTCA 1074
Query 1072 ACACCTACTGCAAAGTCCTTGAAGGAACTACGTTCAGTAGAATCTCCGGATTGCGTTACA 1131
|| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 1075 ACCCCTACTACAAAGTCCTTGAAGGAACTACGTTCAGAAGAATCACCGGATTGCGTTAGA 1134
Query 1132 ACAATGCTCAAAGTCCTGCAGATCAGGAACTTTAAGCCAAACAGGCTACAGATATCAGTG 1191
|||||||||||| |||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1135 ACAATGCTCAAAATCCTACAAATCAGGAATTTTAAGCCAAACAGGCTGCAGATATCAGTG 1194
Query 1192 TTGAGGTACGTGTTGGACAATGCTGAGATTCTTGGATCAGTCATCCTTTCCTCGCCCAAT 1251
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTGAGGTACGTGTTGGACAACGCTGAGATTCTTGGATCAGTCATCCTTTCCTCGCCCAAT 1254
Query 1252 CCAATCACAGAAGAAGAGAAAGCAAGAATCTTGGCTTTTCCTAAAGCCTCTCCCCATGCC 1311
|||||||||||||||| ||||||||||||||| ||| |||||||||||| || ||||||
Sbjct 1255 CCAATCACAGAAGAAGCTAAAGCAAGAATCTTGTCTTATCCTAAAGCCTCACCTCATGCC 1314
Query 1312 TCTGTCTTGTTCGAATGA 1329
|||||||| ||||| |||
Sbjct 1315 TCTGTCTTCTTCGAGTGA 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5