BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14730.1
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478885 jgi|Araly1|478885|fgenesh2_kg.3__1586__AT3G14730.1 2983 0.0
> Ahg478885 jgi|Araly1|478885|fgenesh2_kg.3__1586__AT3G14730.1
Length=1959
Score = 2983 bits (1615), Expect = 0.0
Identities = 1852/1967 (94%), Gaps = 13/1967 (1%)
Strand=Plus/Plus
Query 1 ATGACCGTCTCGTTTCTACGGATCGAGATTCAAAA-TTGTTCTGCCGGAATTTTG-AGAT 58
|||||||| | ||||||||||||| |||||||||| ||| ||| ||||| || || ||
Sbjct 1 ATGACCGTTTTGTTTCTACGGATCAAGATTCAAAATTTG-TCTTCCGGAGTTCTGAAG-C 58
Query 59 TTCTCCCACGGAACCCAGATTTATTCGCAGCTATAAAGCCTTCTTCTGCTTTAGCATCTT 118
|||||||||||||||||||||| |||||||||||||| | ||||| |||| |||||||
Sbjct 59 TTCTCCCACGGAACCCAGATTTCTTCGCAGCTATAAA---TCCTTCTACTTTCGCATCTT 115
Query 119 TATATTCGACTGTTTCTGGGCAAATCGAAGAAAACCCGAAGAGATACGAGCACCACAATG 178
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 116 TATATTCGACAGTTTCTGGGCAAATCGAAGAACACCCGAAGAGATACGAGCACCACAATG 175
Query 179 TTGCTACATGTATCGCCACATTGCAACGCTGTGCACAGCGCAAAGATTACGTTTCCGGCC 238
||||||||| |||||||||||||||||| ||||||||| | ||||||| |||||||||||
Sbjct 176 TTGCTACATCTATCGCCACATTGCAACGGTGTGCACAGAGAAAAGATTCCGTTTCCGGCC 235
Query 239 AACAGATCCACGGTTTCATGGTTAGAAAAGGGTTTCTGGATGATTCGCCACGCGCCGGCA 298
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 236 AACAGATCCACGGTTTCATGGTTAGAAAAGGGTTTCTCGATGATTCTCCACGCGCCGTCA 295
Query 299 CGAGCCTCGTTAACATGTACGCTAAGTGTGGTCTCATGCGGCGTGCGGTGTTGGTCTTTG 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 296 CGAGCCTCGTTAACATGTACGCTAAGTGTGGTCTTATGCGGCGTGCGGTGTTGGTCTTTG 355
Query 359 GTGGATCCGAACGCGATGTATTTGGTTACAACGCTTTGATTTCTGGGTTTGTGGTAAATG 418
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 356 GTGGATCAGAACGCGATGTGTTTGGTTATAACGCTTTGATTTCTGGGTTTGTGGTAAATG 415
Query 419 GGTCTCCTTTGGATGCGATGGAGACGTACAGAGAAATGAGAGCTAATGGGATTTTACCTG 478
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 416 GGTCTCCTTTGGATGCGATGGATATGTACAGAGAAATGAGAGCTAAAGGGATTTTACCTG 475
Query 479 ATAAGTATACATTTCCTAGTTTGCTAAAAGGAAGCGATGCTATGGAGCTTTCTGATGTTA 538
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 476 ATAAGTATACATTTCCTAGTTTGCTAAAAGGAAGCGATGCTATGGAGGTTTCTGATGTAA 535
Query 539 AGAAGGTTCATGGATTGGCGTTTAAACTTGGGTTTGAT-TCCGATTGTTATGTGGGGAGT 597
|||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 536 AGAAGGTTCATGCATTGGCGTTTAAACTTGGGTTTG-TATCCGATTGTTATGTAGGGAGT 594
Query 598 GGCTTAGTTACTTCTTACTCGAAGTTCATGTCAGTGGAGGATGCTCAGAAGGTGTTCGAT 657
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCCTTAGTTACTTCTTACTCGAAGTTCATGTCAGTGGAGGATGCTCAGAAGGTGTTCGAT 654
Query 658 GAATTGCCTGATAGAGATGACAGTGTGCTTTGGAATGCTTTAGTTAATGGGTATTCACAG 717
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 655 GAATTGCCTGATAGAGATGATAGTGTGCTTTGGAATGCTTTGGTTAATGGGTATTCACAG 714
Query 718 ATTTTTAGATTTGAGGATGCTTTATTAGTCTTTAGTAAAATGCGTGAAGAAGGTGTAGGT 777
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 715 ATTTTTAGATTTGAGGATGCTTTAATAGTCTTTAGTAAAATGCGTGAAGAAGGTGTAGCT 774
Query 778 GTGAGCAGGCATACCATTACAAGCGTCTTATCAG-CATTTACTGTTTCAGGGGATATTGA 836
|||| ||||||||||| || ||||||||||| | |||||||||| ||||||||| ||||
Sbjct 775 ATGAGTAGGCATACCATCACTAGCGTCTTATC-GTCATTTACTGTGTCAGGGGATCTTGA 833
Query 837 CAACGGTAGGTCAATCCATGGCCTTGCGGTGAAAACGGGA-TCTGGTTCTGATATTGTTG 895
||||||||||||||||||||| ||||||||||||| |||| || | ||||| ||||||||
Sbjct 834 CAACGGTAGGTCAATCCATGGTCTTGCGGTGAAAATGGGATTC-GATTCTGGTATTGTTG 892
Query 896 TGTCAAATGCATTGATTGATATGTATGGGAAGAGTAAATGGCTAGAAGAGGCAAACAGTA 955
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 893 TGTCAAATGCATTGATTGATATGTATGGAAAGAGTAAATGGCTAGAAGAGGCAAACAGTA 952
Query 956 TATTCGAAGCAATGGATGAGAGAGACCTGTTTACATGGAACTCTGTTTTATGTGTTCATG 1015
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 953 TATTTGAAGCAATGGATGAGAGAGACCTGTTTACTTGGAACTCTGTTTTGTGTGTTCATG 1012
Query 1016 ACTACTGTGGTGATCATGATGGAACATTAGCTCTTTTCGAAAGGATGCTTTGTTCTGGAA 1075
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1013 ACTACTGTGGTGATCATGATGGAACCTTAGCTCTTTTCGAAACGATGCTTTGTTCTGGAA 1072
Query 1076 TCCGACCTGATATTGTTACATTGACAACTGTTCTGCCCACCTGCGGTCGTCTAGCTTCAC 1135
|||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1073 TCCGACCTGATATTGTCACATTGACAACCGTTCTACCCACTTGCGGTCGTCTAGCTTCAC 1132
Query 1136 TGAGGCAGGGCAGAGAGATTCATGGGTACATGATCGTCAGTGGACTTCTAAACCGCAAAT 1195
||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1133 TGAAGCAAGGAAGAGAGATTCATGGCTACATGATCGCCAGTGGACTTCTAAACCGCAAAT 1192
Query 1196 CTAGTAATGAATTTATACATAATTCTTTGATGGATATGTACGTGAAATGCGGGGACTTGA 1255
||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1193 CTAGTAATGGATTCATACATAACTCTTTAATGGATATGTACGTGAAATGCGGGGACTTGA 1252
Query 1256 GGGACGCTCGGATGGTTTTCGACTCAATGAGGGTTAAAGACTCAGCTTCTTGGAATATTA 1315
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1253 GGGACGCTCGGATGGTTTTCGACTCGATGAGGGTTAAAGACTCAGCTTCTTGGAATATCA 1312
Query 1316 TGATTAATGGCTATGGTGTGCAGAGCTGCGGTGAGTTAGCTTTGGATATGTTTTCATGTA 1375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGATTAATGGTTATGGTGTGCAGAGCTGCGGTGAGTTAGCTTTGGATATGTTTTCATGTA 1372
Query 1376 TGTGCAGAGCCGGTGTCAAACCCGATGAAATCACATTTGTTGGGTTGCTACAAGCGTGTA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TGTGCAGAGCCGGTGTCAAACCCGATGAAATCACATTTGTTGGGTTGCTACAAGCGTGTA 1432
Query 1436 GCCACTCTGGTTTTTTGAACGAAGGGAGAAATTTTTTGGCACAGATGGAGACGGTATATA 1495
||||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1433 GCCACTCAGGTTTTGTGAACGAAGGGCGAAATTTTTTGGCACAGATGGAGACGTTATATA 1492
Query 1496 ACATTCTCCCAACAAGTGATCACTACGCTTGTGTAATAGACATGCTTGGCCGTGCAGACA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ACATTCTCCCAACAAGTGATCACTACGCTTGTGTAATAGACATGCTTGGCCGTGCAGACA 1552
Query 1556 AGCTAGAGGAAGCATATGAGTTAGCAATATCAAAGCCCATTTGCGATAATCCTGTAGTCT 1615
|||| |||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1553 AGCTGGAGGAAGCATATGATTTAGCGATATCGATGCCCATTTGCGATAATCCTGTAGTCT 1612
Query 1616 GGCGGTCAATATTGTCATCTTGTCGTCTCCACGGGAACAAAGATCTCGCACTGGTGGCAG 1675
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1613 GGAGGTCAATATTGTCATCTTGTCGTCTCCACGGGAACAAAGATCTTGCACTGGTTGCAG 1672
Query 1676 GAAAGCGGCTACATGAGCTCGAGCCAGAGCATTGTGGCGGTTATGTATTAATGTCTAATG 1735
||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1673 GAAAGCGGCTATATGAGCTTGAGCCAGAGCATTGCGGCGTTTATGTATTAATGTCTAATG 1732
Query 1736 TTTATGTGGAAGCTGGGAAGTACGAGGAAGTGTTGGACGTTAGAGACGCAATGAGACAAC 1795
|||||||||||||| |||||| |||||||| ||||||||||||||| |||||| | | |
Sbjct 1733 TTTATGTGGAAGCTAAGAAGTATGAGGAAGTCTTGGACGTTAGAGACACAATGAAAGAGC 1792
Query 1796 AGAATGTGAAGAAGACACCAGGTTGCAGCTGGATTGTGCTCAAGAACGGTGTTCACACGT 1855
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1793 AGAATGTGAAGAAGACACCAGGTTGCAGCTGGATTGGGCTCCAGAACGGTGTTCACACGT 1852
Query 1856 TCTTTACCGGCAATCAGACTCACCCGGAATTTAAATCTATCCACGATTGGTTAAGCCTAG 1915
||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1853 TCTTTACTGGCGATCAGACTCACCCGGAATTTGAATCTATCCACGGTTGGTTAAGCCTAT 1912
Query 1916 TGATTTCTCATATGCACGGTCATGAGTATATGACGGTCGACGACTAA 1962
|||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1913 TGATTTCTCATATGCATGGTCATGAGTATATGACGCTCGACGACTAA 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5