BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14740.2 Length=1273 Score E Sequences producing significant alignments: (Bits) Value Ahg904398 jgi|Araly1|904398|Al_scaffold_0003_1526 1463 0.0 > Ahg904398 jgi|Araly1|904398|Al_scaffold_0003_1526 Length=1029 Score = 1463 bits (792), Expect = 0.0 Identities = 961/1040 (92%), Gaps = 21/1040 (2%) Strand=Plus/Plus Query 118 ATGGATGCTCAATATCAAGATCTACCTCCTCTCAAAAGATTAAGACTGTTGCAGAGAGAT 177 ||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| Sbjct 1 ATGGATGCTCAATATCAAGATCTACCTCCTCTCAAAAGATTGAGATTGATGCAGCGAGAT 60 Query 178 CTCGAAGCTGCTCAACAGCACCAGCTACCGAACCAACCGGAGATGAAGTCGTTGCAGTTG 237 ||||||||||| ||||| || ||||||| ||||||||||||| |||||||||||||||| Sbjct 61 CTCGAAGCTGCGCAACAACAACAGCTACTGAACCAACCGGAGGCGAAGTCGTTGCAGTTG 120 Query 238 CCGGCAAAGAAGAGGAAGCAGACTCGTGTTGATTATGACGATGACGACGCAGAGAACTCC 297 || || |||||||||||||||||||||||||| | | |||| ||||| || ||||||||| Sbjct 121 CCTGCGAAGAAGAGGAAGCAGACTCGTGTTGA-T-T-ACGACGACGATGCCGAGAACTCC 177 Query 298 AATCCCACCTATCATTGTCTTCCGGCGAAGAAAAGGATCTGGGCGATTGATCCCGATCTT 357 ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct 178 AATCCTACCTATCATTGTCTTCCGGCGAAGAAAAGGATTTGGGCGATTGATCCTGAT-TT 236 Query 358 -CTCTCCGGTGGTGGTAACCCCTTTTCGCCTTTTGATCTAAATGTAGAGTATAAG---CC 413 |||||| ||||| || ||||||||||||||||| ||||| ||||||||| || Sbjct 237 GCTCTCC------GGTAATCCTTTTTCGCCTTTTGATCTGAATGTTGAGTATAAGCCTCC 290 Query 414 TTATGTTGAAGAGAAATCAATTGAGAAAAAGTCAACTCTAAAT-GTTGAATCTAGTCTAG 472 || ||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 291 TTCCGTTGAGGAGAAGTCAATTGAGAAAAAGTCAACTCT-AATGGTTGAATCTAGTCTAG 349 Query 473 AGGTAGAAGA--A-GATGATGATAAAGAGAATATAGATCCTCTAGGGAAAGGAAAAGCTT 529 |||| ||||| | |||||||||||||||||| |||||||||||||||||| ||||| || Sbjct 350 AGGTGGAAGATGATGATGATGATAAAGAGAATGTAGATCCTCTAGGGAAAGAAAAAGTTT 409 Query 530 TAGATCTCTCTGATAGAGAAGTAGAAGATGAAGATGGGATTATGTGTGCTGTATGTCAAA 589 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 410 TAGATCTCTCAGATAGAGAAGTAGAAGATGAAGATGGGATTATGTGTGTTGTATGTCAAA 469 Query 590 GTACAGATGGTGATCCATTGAATCCAATTGTGTTCTGTGATGGTTGTGATTTGATGGTTC 649 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 470 GCACAGATGGTGATCCATCGAATCCAATTGTGTTCTGTGATGGTTGTGATTTGATGGTTC 529 Query 650 ATGCTTCTTGCTATGGGAATCCTCTTGTTAAGGCTATTCCAGAAGGTGATTGGTTTTGTA 709 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 530 ATGCTTCTTGCTATGGGAATCCTCTTGTTAAGGCTATACCAGAAGGTGATTGGTTTTGTA 589 Query 710 GACAGTGTTTATCGTCGAAGAACCGAGAAAAGATCTTCTCTTGCTGCTTGTGTACAACTA 769 |||||||| |||| |||||||| ||||||||| | ||||||||||||||||||||||||| Sbjct 590 GACAGTGTATATCATCGAAGAATCGAGAAAAGCTTTTCTCTTGCTGCTTGTGTACAACTA 649 Query 770 AAGGCGGG-GCGATGAAACCTACGAATGATGGTAGATGGGCTCATATTACTTGTGCGTTG 828 |||| ||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||| Sbjct 650 AAGG-GGGAGCGATGAAACCTACTAATGATGGTCGATGGGCTCATATTACTTGCGCGTTG 708 Query 829 TTTGTTCCGGAAGTTTACTTTGAGGATCCTGAAGGAAGAGAAGGGATTTGTTGTAGTGAG 888 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 709 TTTGTGCCTGAAGTTTACTTTGAGGATCCTGAAGGAAGAGAAGGGATTTGTTGTAGCGAG 768 Query 889 GTATTGAGTAAGAGATGGAAAGATAGGTGTTATTTGTGTAAGGTTAGACGCGGTTGTGTT 948 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 ATACCGAGTAAGAGATGGAAAGATAGGTGTTATTTGTGTAAGGTTAGACGCGGTTGTGTT 828 Query 949 ATTGAGTGTTCGGAGATGAGATGTAAGTTGGCTTTTCATGTTACTTGTGGGTTAAAGGAA 1008 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 829 ATCGAGTGTTCGGAGATGAGATGTAAGTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAA 888 Query 1009 GATCTTTGTATTGAGTATCGTGAAGGGAAGAAGAGTGGTGGTATTGTTGTTGGTTTCTGT 1068 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 889 GATCTTTGCATTGAGTATCGTGAAGACAAGAAGAGTGGTGGTATTGTTGTTGGTTTCTGC 948 Query 1069 AATGAGCATACCAAACTTTGGGAAAGGCAACAGGAAAGTGGAAAGTACAAGATTGTTGCC 1128 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 949 AATGAGCATACCAAACTATGGGAAAGGCAACAGGAAAGTGGAAAGTACAAGATTGTTGCC 1008 Query 1129 AGAGAAGAAGATAAAAAGTA 1148 ||||| |||||||| ||||| Sbjct 1009 AGAGATGAAGATAAGAAGTA 1028 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47577400416 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5