BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14740.2
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904398 jgi|Araly1|904398|Al_scaffold_0003_1526 1463 0.0
> Ahg904398 jgi|Araly1|904398|Al_scaffold_0003_1526
Length=1029
Score = 1463 bits (792), Expect = 0.0
Identities = 961/1040 (92%), Gaps = 21/1040 (2%)
Strand=Plus/Plus
Query 118 ATGGATGCTCAATATCAAGATCTACCTCCTCTCAAAAGATTAAGACTGTTGCAGAGAGAT 177
||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct 1 ATGGATGCTCAATATCAAGATCTACCTCCTCTCAAAAGATTGAGATTGATGCAGCGAGAT 60
Query 178 CTCGAAGCTGCTCAACAGCACCAGCTACCGAACCAACCGGAGATGAAGTCGTTGCAGTTG 237
||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct 61 CTCGAAGCTGCGCAACAACAACAGCTACTGAACCAACCGGAGGCGAAGTCGTTGCAGTTG 120
Query 238 CCGGCAAAGAAGAGGAAGCAGACTCGTGTTGATTATGACGATGACGACGCAGAGAACTCC 297
|| || |||||||||||||||||||||||||| | | |||| ||||| || |||||||||
Sbjct 121 CCTGCGAAGAAGAGGAAGCAGACTCGTGTTGA-T-T-ACGACGACGATGCCGAGAACTCC 177
Query 298 AATCCCACCTATCATTGTCTTCCGGCGAAGAAAAGGATCTGGGCGATTGATCCCGATCTT 357
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 178 AATCCTACCTATCATTGTCTTCCGGCGAAGAAAAGGATTTGGGCGATTGATCCTGAT-TT 236
Query 358 -CTCTCCGGTGGTGGTAACCCCTTTTCGCCTTTTGATCTAAATGTAGAGTATAAG---CC 413
|||||| ||||| || ||||||||||||||||| ||||| ||||||||| ||
Sbjct 237 GCTCTCC------GGTAATCCTTTTTCGCCTTTTGATCTGAATGTTGAGTATAAGCCTCC 290
Query 414 TTATGTTGAAGAGAAATCAATTGAGAAAAAGTCAACTCTAAAT-GTTGAATCTAGTCTAG 472
|| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 291 TTCCGTTGAGGAGAAGTCAATTGAGAAAAAGTCAACTCT-AATGGTTGAATCTAGTCTAG 349
Query 473 AGGTAGAAGA--A-GATGATGATAAAGAGAATATAGATCCTCTAGGGAAAGGAAAAGCTT 529
|||| ||||| | |||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 350 AGGTGGAAGATGATGATGATGATAAAGAGAATGTAGATCCTCTAGGGAAAGAAAAAGTTT 409
Query 530 TAGATCTCTCTGATAGAGAAGTAGAAGATGAAGATGGGATTATGTGTGCTGTATGTCAAA 589
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 410 TAGATCTCTCAGATAGAGAAGTAGAAGATGAAGATGGGATTATGTGTGTTGTATGTCAAA 469
Query 590 GTACAGATGGTGATCCATTGAATCCAATTGTGTTCTGTGATGGTTGTGATTTGATGGTTC 649
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GCACAGATGGTGATCCATCGAATCCAATTGTGTTCTGTGATGGTTGTGATTTGATGGTTC 529
Query 650 ATGCTTCTTGCTATGGGAATCCTCTTGTTAAGGCTATTCCAGAAGGTGATTGGTTTTGTA 709
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 530 ATGCTTCTTGCTATGGGAATCCTCTTGTTAAGGCTATACCAGAAGGTGATTGGTTTTGTA 589
Query 710 GACAGTGTTTATCGTCGAAGAACCGAGAAAAGATCTTCTCTTGCTGCTTGTGTACAACTA 769
|||||||| |||| |||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 590 GACAGTGTATATCATCGAAGAATCGAGAAAAGCTTTTCTCTTGCTGCTTGTGTACAACTA 649
Query 770 AAGGCGGG-GCGATGAAACCTACGAATGATGGTAGATGGGCTCATATTACTTGTGCGTTG 828
|||| ||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 650 AAGG-GGGAGCGATGAAACCTACTAATGATGGTCGATGGGCTCATATTACTTGCGCGTTG 708
Query 829 TTTGTTCCGGAAGTTTACTTTGAGGATCCTGAAGGAAGAGAAGGGATTTGTTGTAGTGAG 888
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 709 TTTGTGCCTGAAGTTTACTTTGAGGATCCTGAAGGAAGAGAAGGGATTTGTTGTAGCGAG 768
Query 889 GTATTGAGTAAGAGATGGAAAGATAGGTGTTATTTGTGTAAGGTTAGACGCGGTTGTGTT 948
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATACCGAGTAAGAGATGGAAAGATAGGTGTTATTTGTGTAAGGTTAGACGCGGTTGTGTT 828
Query 949 ATTGAGTGTTCGGAGATGAGATGTAAGTTGGCTTTTCATGTTACTTGTGGGTTAAAGGAA 1008
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 829 ATCGAGTGTTCGGAGATGAGATGTAAGTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAA 888
Query 1009 GATCTTTGTATTGAGTATCGTGAAGGGAAGAAGAGTGGTGGTATTGTTGTTGGTTTCTGT 1068
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 889 GATCTTTGCATTGAGTATCGTGAAGACAAGAAGAGTGGTGGTATTGTTGTTGGTTTCTGC 948
Query 1069 AATGAGCATACCAAACTTTGGGAAAGGCAACAGGAAAGTGGAAAGTACAAGATTGTTGCC 1128
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AATGAGCATACCAAACTATGGGAAAGGCAACAGGAAAGTGGAAAGTACAAGATTGTTGCC 1008
Query 1129 AGAGAAGAAGATAAAAAGTA 1148
||||| |||||||| |||||
Sbjct 1009 AGAGATGAAGATAAGAAGTA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5