BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14750.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478888 jgi|Araly1|478888|fgenesh2_kg.3__1589__AT3G14750.1 1604 0.0
> Ahg478888 jgi|Araly1|478888|fgenesh2_kg.3__1589__AT3G14750.1
Length=1230
Score = 1604 bits (868), Expect = 0.0
Identities = 1005/1070 (94%), Gaps = 14/1070 (1%)
Strand=Plus/Plus
Query 223 CTCGAATTTTCCAGGAAGTGAAACTAGAATT-TGATTCTGC-GTAGTATTGAACATTAAG 280
||||||||| |||| || ||||||||||||| | || | | | ||| || |||||| ||
Sbjct 140 CTCGAATTTACCAGAAATTGAAACTAGAATTGCGCTTAT-CAG-AGTGTTAAACATTGAG 197
Query 281 ATAATGTCTGGAAGAAATCGTGGACCTCCTCCTCCATCAATGAAAGGTGGATCTTACAGT 340
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct 198 ATAATGTCTGGAAGAAATCGTGGACCTCCTCCTCCTTCAGTGAAAGGTGGATCTTACAAT 257
Query 341 GGTTTACAAGCTCCGGTTCATCAACCGCCTTTCGTTAGAGGCTTAGGAGGAGGACCAGTG 400
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 258 GGCTTACAAGCTCCGGTTCATCAACCGCCTTTTGTTAGAGGGTTAGGAGGAGGACCTGTG 317
Query 401 CCTCCTCCTCCTCATCCTTCTATGATTGATGATAGTAGAGAACCTCAATTTAGAGTAGAT 460
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 318 ---CCTCCTCCTCGTCCTTCTATGATTGATGATAGTAGAGAACCTCAATTTAGAGTGGAT 374
Query 461 GCAAGAGGTCTTCCTCCACAATTTTCGATTCTGGAGGATCGTCTCGCTGCTCAGAATCAA 520
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 375 GCAAGAGGTCTTCCTCCACAGTTTTCGATTTTGGAGGATCGACTCGCTGCTCAGAATCAA 434
Query 521 GATGTTCAGGGCTTACTCGCTGATAACCAGAGACTGGCTGCGACTCATGTTGCGCTTAAA 580
||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 435 GATGTGCAGGGTTTACTTGCTGATAACCAGAGGCTGGCTGCTACTCATGTTGCGCTTAAA 494
Query 581 CAGGAGTTAGAAGTTGCTCAGCATGAATTGCAAAGAATAATGCATTACATTGATTCCTTG 640
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 495 CAGGAGCTAGAAGTTGCTCAGCATGAATTGCAAAGAATGATGCATTACATTGATTCCTTG 554
Query 641 AGAGCTGAGGAAGAGATTATGATGAGGGAGATGTATGATAAATCTATGCGATCCGAAATG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AGAGCTGAGGAAGAGATTATGATGAGGGAGATGTATGATAAATCTATGCGATCCGAAATG 614
Query 701 GAATTGCGTGAAGTCGATGCTATGCGAGCTGAGATTCAAAAGATCCGTGCGGATATCAAA 760
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 615 GAATTACGTGAAGTCGATGCTATGCGAGCTGAGATTCAAAAGGTCCGTGCGGATATCAAA 674
Query 761 GAGTTTACTTCAGGTAGACAGGAACTAACGAGTCAGGTTCACCTGATGACTCAAGATTTA 820
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 675 GAGTTTACTTCAGGTAGGCAGGAACTAACGAGTCAGGTTCACGTGATGACTCAAGATTTG 734
Query 821 GCTAGACTTACAGCAGATTTGCAGCAGATACCAACGTTAACTGCAGAAATTGAGAACACA 880
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 735 GCTAGACTTACAGCAGATTTGCAGCAGATACCAACATTAACTGCAGAAATTGAGAACACA 794
Query 881 AAGCAAGAGCTGCAACGCGCAAGAGCGGCTATTGATTATGAGAAGAAAGGGTACGCGGAA 940
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 795 AAGCAAGAGCTGCAACGCGCAAGAGCGGCTATTGATTATGAGAAGAAAGGGTATGCGGAA 854
Query 941 AACTACGAGCATGGCAAAATTATGGAGCATAAATTAGTTGCAATGGCTCGGGAACTGGAG 1000
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 855 AACTACGAGCATGGCAAGATTATGGAGCATAAATTAGTCGCAATGGCTCGGGAACTGGAG 914
Query 1001 AAGCTTCGAGCAGAGATTGCTAACTCAGAAACGAGTGCTTATGCTAA-TGGTCCTGTTGG 1059
||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||
Sbjct 915 AAGCTTCGAGCAGAGATTGCTAACTCAGAAACGAGGGCTCATGC-AGCTGGTCCTGTTGG 973
Query 1060 GAATCCTGGTGGAGTTGCTTATGGTGGTGGATATGGAAATCCTGAGGCTGGGTATCCTGT 1119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 974 GAATCCTGGTGGAGTTGCTTATGGTGGTGGCTATGGAAATCCTGAGGCTGGGTATCCTGT 1033
Query 1120 GAATCCTTATCAACCCAACTATACCATGAATCCAGCACAAACAGGCGTTGTTGGCTATTA 1179
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1034 GAATCCTTATCAACCCAACTATGTCATGAATCCAGCACAAGCAGGCGTTGTTGGCTATTA 1093
Query 1180 TCCTCCTCCTTACGGACCACAGGCTGCGTGGGCTGGTGGCTACGATCCGCAACAGCAACA 1239
||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1094 TCCTCCTCCATACGGACCGCAGGCTGCGTGGGCTGGTGGCTATGATCCGCAACAACAGCA 1153
Query 1240 GCAGCAGCAGCCGCCA-CCACAAGGACAAGGACATCGATGAAAAAGTCAA 1288
||||||||||| || | |||| | ||||||||||||||||||||||||
Sbjct 1154 GCAGCAGCAGCAGC-AGCCACCA---CAAGGACATCGATGAAAAAGTCAA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5