BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14760.1
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929254 jgi|Araly1|929254|scaffold_301711.1 856 0.0
> Ahg929254 jgi|Araly1|929254|scaffold_301711.1
Length=547
Score = 856 bits (463), Expect = 0.0
Identities = 520/548 (95%), Gaps = 2/548 (0%)
Strand=Plus/Plus
Query 72 GACCCCAAATTTAGCAAAAAATGGAAGCCTTGTGGAAGTTGGAGGAGAAACTGAAGCTAA 131
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACCCCAAATTTAGCAAACAATGGAAGCCTTGTGGAAGTTGGAGGAGAAACTGAAGCTAA 60
Query 132 CTACGAAAGAAGCCGTTGTGATCTTGGTCGGAACAGCGGCTGCGGTAACGCTACTCTGCA 191
| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CAACGAAAGAAGCTGTTGTGATCTTGGTCGGAACAGCGGCTGCGGTAACGTTACTCTGCA 120
Query 192 TAGCCGCAGCGTTTCTCAACCGCAATTCTCGAGGGAAGCAAGTAGCAGACGCAGAGTGGG 251
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGCTGCAGCGTTTCTCAACCGCAATTCTCGAGGGAAGCAAGTAGCAGACGCAGAGTGGG 180
Query 252 CGTCTGAAACAGCGTTTGGGTCAAGGACTATGGAGGAAAAGAGGAAATGTAAGTGGAGCA 311
|||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CGTCCGAAACAGCGTTTGCGTCAAGGACAATGGAGGAAAAGAGGAAATGTAAGTGGAGCA 240
Query 312 AAGTGAA-AAGAACGTTGATGGGTTCTTTTTGTTGGAGCTCTGCTGCGAAGTGGATGGAG 370
||||||| ||| |||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 241 AAGTGAAGAAG-ACGTTGATGGGTTCGTTTTGCTGGAGCTCTGCAGCGAAGTGGATGGAG 299
Query 371 ATGGAAACAAGGCGGCAGCCACCATTGCTTGCGGTTAAAGAAAGGAGTCTTAATGCGGTT 430
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct 300 ATGGAAACAAGGCGGCCGCCACCATTGCTTGCGGCTAAAGAAAGGAGTCTTAACGCCGTT 359
Query 431 GATCCGGTTTGGCAGCGACCAATTCTGATGGGTGAGAAATGTGAATTGCCTCGGTTTAGC 490
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATCCTGTTTGGCAGCGACCAATTCTGATGGGTGAGAAATGTGAATTGCCTCGGTTTAGC 419
Query 491 GGCCTTATATTGTATGATGAATGTGGCCATCCGCGTCATCATCCTCAGCTTCAAGAAAAA 550
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||
Sbjct 420 GGCCTTATATTGTATGATGAACGCGGCCATCCGCGTCATCATCCTCAACTTCAAGAACAA 479
Query 551 GTAAAACAGAGTTCTGTGGTAAGAACAACTCTGAGAGATTTGCTTTGACAGTGATTTTCT 610
|||||||| | |||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 480 GTAAAACAAATTTCTGTGGTAAGAACAACGCTGAGAGATTTGCTTTGATAGTGGTTTTCT 539
Query 611 CTAGAAGG 618
||| ||||
Sbjct 540 CTACAAGG 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29850244011
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5