BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14780.1

Length=1214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929257 jgi|Araly1|929257|scaffold_301714.1                        259    3e-68
  Ahg929239 jgi|Araly1|929239|scaffold_301696.1                        220    1e-56


> Ahg929257 jgi|Araly1|929257|scaffold_301714.1
Length=360

 Score =  259 bits (140),  Expect = 3e-68
 Identities = 190/213 (89%), Gaps = 7/213 (3%)
 Strand=Plus/Plus

Query  109  TCCTACCGA--TGTTTTTCTTGATATGGATCCCATCCT-CCCGGAAGATTCGCCGGCAAC  165
            ||| |||||  ||||||||||||||||||||||||| | |||| ||||||||||   |||
Sbjct  1    TCCCACCGACGTGTTTTTCTTGATATGGATCCCATCTTACCCG-AAGATTCGCC---AAC  56

Query  166  CAGCTTGTTCACGAGACCCCTCGCTTTGAAAGAACAATATGTGTGGGAGCCCTATGACAG  225
            ||||  |||||||||||| ||||||||  | ||||||||||||||||| ||||| |||||
Sbjct  57   CAGCCAGTTCACGAGACCACTCGCTTTTCAGGAACAATATGTGTGGGAACCCTACGACAG  116

Query  226  CGAGAAGCTTCCGGAGACATTAGCCTCAGGGATTCAAAGGTTTCTTCGTGTAGCAAACTT  285
            ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct  117  CGAGAAGCTTCCGGAGACATTAGCCTCAGAGATTCAGAGGTTTCTTCTTGTAGCAAACTT  176

Query  286  GGTTGAGTCTGATGATCCTCGTGTTGCTTATCT  318
            |||||||||||| || ||||||||| |||||||
Sbjct  177  GGTTGAGTCTGAAGAACCTCGTGTTTCTTATCT  209


> Ahg929239 jgi|Araly1|929239|scaffold_301696.1
Length=5969

 Score =  220 bits (119),  Expect = 1e-56
 Identities = 163/184 (89%), Gaps = 3/184 (2%)
 Strand=Plus/Plus

Query  422  GATGACGAGTTTACTATAAGAAGAAGAAAGGA-AATAAATGATCATAAGGAACTCAAACG  480
            ||||| ||||||||| | |||||||||||||| ||  | ||||  |  ||| ||||||||
Sbjct  327  GATGAAGAGTTTACTGTGAGAAGAAGAAAGGAGAA-GAGTGATGTTCGGGAGCTCAAACG  385

Query  481  TGTTTATCATGCTTACAATGAATACATCATCAGACATGGTGCATCATTCAATTTGGATAA  540
            |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  386  TGTTTATCATGCTTACAAGGAATACATTATCAGACATGGTGCATCATTCAATTTGGATAA  445

Query  541  TAGTCAGCAAGAGAAGTTGATAAATGCACGCAGCATTGCTTCTGTTTTATATGAAATTCT  600
            |||||||| |||||||||||| || |||||||| |||||||||||||| |||||| ||||
Sbjct  446  TAGTCAGCGAGAGAAGTTGATTAACGCACGCAGAATTGCTTCTGTTTTGTATGAAGTTCT  505

Query  601  -AAG  603
             |||
Sbjct  506  CAAG  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45328148313


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5