BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14820.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341606 jgi|Araly1|341606|fgenesh1_pg.C_scaffold_3001369 1491 0.0
> Ahg341606 jgi|Araly1|341606|fgenesh1_pg.C_scaffold_3001369
Length=936
Score = 1491 bits (807), Expect = 0.0
Identities = 894/937 (95%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 121 ATGGATACAGGAAATAATAATGACATCCCCACTCTTCTTAAGTCCAATTTTCCTCCCTAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGATACAGGAAATAATAATGACATCCCAACTCTTCTTAAGTCCAATTTTCCTCCCTAT 60
Query 181 GGTCGAGATTTTCCTGGTGCTATTCCTACCGGTAGATTTTCAGACGGGAAAGTTCCATCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTCGAGATTTTCCTGGTGCTATTCCTACCGGTAGATTTTCAGACGGGAAAGTTCCATCG 120
Query 241 GACATCATTGCGGAATCGTTAGGAATAGCAAAAACACTACCACCATATTTAGGCTCGAAT 300
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 121 GACATCATTGCGGAAAAATTAGGGATAGCAAAGACACTACCACCATATTTAGGCTCGAAT 180
Query 301 CTAAAGCCACATGATCTTCTAAAAGGTGTAATCTTTGCTTCTGGAGGTTCCGGTTATGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTAAAGCCACATGATCTTCTAAAAGGTGTAATCTTTGCTTCTGGAGGTTCTGGTTATGAT 240
Query 361 CCATTAACATCTACATTACTGTCTGTAGTATCAATGTCAGACCAACTAAAGTATTTTCAA 420
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CCATTAACATCTAAATTACTGTCTGTAGTATCAATGTCAGACCAACTAAAATATTTTCAA 300
Query 421 GAATACCTAGCAAAAATTAAGCAACACTTTGGAGAAGAAAAAGTTAAGTTCATATTGGAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GAATACCTAGCAAAAATTAAGCAACACTTTGGAGAAGAAAAAGTTAAGTTTATATTGGAG 360
Query 481 AAAAGTGTGTTTCTTGTGGTCTCTAGCAGTAATGATCTCGCTGAGACTTATTGGGTTCGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AAAAGTGTGTTTCTTGTGGTCTCTAGCAGTAATGATCTCGCTGAGACTTATTTGGTTCGA 420
Query 541 TCGGTCGAATATGATCGTAACTCATATGCTGAATATCTGGTTGAGTTGGCTTCAGAGTTC 600
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 421 TCGGTCGAATATGATCGTAACTCGTATGCTGAATATCTGGTTGAATTGGCTTCAGAGTTC 480
Query 601 ATCAAAGAATTATCTGAACTTGGAGCTAAAAACATTGGACTGTTTAGCGGAGTACCAGTA 660
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 ATCAAAGAATTATCTGGACTTGGAGCTAAAAACATTGGAGTGTTTAGCGGAGTACCAGTT 540
Query 661 GGGTGTTTACCCGCGCAAAGAACACTTTTTGGAGGCTTTGAAA-GAAAATGTTATGAAAA 719
|||||| ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||
Sbjct 541 GGGTGTGTACCCGCGCAAAGAACACTTTTTGGGGG-TTTCAAAAGAAAATGTTATGAAAA 599
Query 720 GTTGAATAACATGGCACTTCATTTCAATTCAAAGCTATCTTCTAGTTTGGATACTCTAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTGAATAACATGGCACTTCATTTCAATTCAAAGCTATCTTCTAGTTTGGATACTCTAAA 659
Query 780 GAAAGAACTGCCCAGCAGACTAATATTTATCGACGTTTACGATACTCTTCTCGATATAAT 839
||||||| ||||| | | |||| |||||||||| ||||| || ||||||||||| || ||
Sbjct 660 GAAAGAATTGCCCGGTAAACTAGTATTTATCGATGTTTATGAAACTCTTCTCGACATCAT 719
Query 840 TAAAAATCCTACAAATTACGGATTTAAAGTGGCAGATAAAGGATGTTGTGGTACAGGAAA 899
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 CAAAAATCCTAGAAATTACGGATTTAAAGTAGCAGATAAAGGATGTTGTGGTACAGGAAA 779
Query 900 AATTGAGTTGATGGAATTGTGCAATAAATTTACTCCTTTTACATGTTCGGATGCATCGAC 959
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 AATTGAGTTGGTGGAATTGTGCAACAAATTTACTCCTTTTACATGTTCGGATGCATCGAC 839
Query 960 TCATGTGTTCTTCGACTCTTATCATCCGAGTGAAAAGGCATATCAGATTATCACTCATAA 1019
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 840 TCATGTGTTCTTTGACTCTTATCATCCGAGTGAAAAGGCCTATCAGATTATCACTGATAA 899
Query 1020 ATTGTTAGCAAAATACCGTAAATACCTAAACACCTGA 1056
| ||||||||||||||| ||| |||||||||| ||||
Sbjct 900 AGTGTTAGCAAAATACCTTAAGTACCTAAACAACTGA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5